bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
C.familiaris
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSCAFT00000038917
Representative transcript
genome : 50,315,110 - 50,323,383 (8,274)
query : 1 - 1,110 (1,110/1,110)
6 exons
identity = 0.978
3'(1.000;0.926;1.000;0.990;0.773;0.944)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000042512
Pongo
sp. (Orangutan) : ENSPPYT00000006461
Macaca
sp. (Macaque) : XM_001087088
Mus
sp. (Mouse) : AK142510
Rattus
sp. (Rat) : AY191367
Equus
sp. (Horse) : XM_001490473
Bos
sp. (Cow) : XM_586409
Monodelphis
sp. (Opossum) : XM_001377251
Gallus
sp. (Chicken) : XM_425594
Danio
sp. (Zebrafish) : XM_692784
Oryzias
sp. (Medaka) : ENSORLT00000004426
Tetraodon
sp. (Tetraodon) : GSTENT00024817001
Takifugu
sp. (Fugu) : SINFRUT00000159316
ENSCAFT00000008890
genome : 50,316,683 - 50,318,255 (1,573)
query : 1 - 1,032 (1,032/1,032)
3 exons
identity = 0.997
3'(1.000;0.917;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_542646
genome : 50,317,248 - 50,318,261 (1,014)
query : 1 - 1,014 (1,014/1,014)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSCAFT00000038915
genome : 50,317,488 - 50,319,238 (1,751)
query : 1 - 804 (804/804)
2 exons
identity = 0.998
3'(1.000;0.958)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
contig_17357
50311246-50327245 W +
MLT1D
L1MEb
L1M4b
SINEC_Cf3
(CA)n
SINEC_Cf3
SINEC_Cf2
polypurine
SINEC_a1
polypurine
L1MC5
SINEC_a2
L1MC5
SINEC_a1
SINEC_a1
SINEC_b2
MIRb
MIR
L2
MIR
L2
MIR
MIR
GC_rich
(CCCCG)n
(CA)n
L1MB3
MER74A