bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0008184
HIT000312820 (
ENST00000359246
)
(Lysine-specific demethylase PHF2; EC=1.14.11.-; GRC5; PHD finger protein 2;)
genome : 96,338,689 - 96,441,865 (103,177)
query : 1 - 5,565 (5,565/5,565)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 1.14.11.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto_nucl 16.5, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008184)
HIX0008184
HIT000202087 (
NM_005392
)
(Lysine-specific demethylase PHF2; EC=1.14.11.-; GRC5; PHD finger protein 2;)
genome : 96,338,909 - 96,441,869 (102,961)
query : 1 - 5,349 (5,349/5,349)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 1.14.11.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto_nucl 16.5, cyto 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008184)
HIX0008184
HIT000356656 (
ENST00000375376
)
(Lysine-specific demethylase PHF2; EC=1.14.11.-; GRC5; PHD finger protein 2;)
genome : 96,338,909 - 96,441,869 (102,961)
query : 1 - 3,042 (3,042/3,042)
8 exons
identity = 0.999
5'(0.961;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 1.14.11.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 3, mito 2.5, extr 2, E.R._mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008184)
HIX0008184
HIT000261532
(
BC064613
)
(Lysine-specific demethylase PHF2; EC=1.14.11.-; GRC5; PHD finger protein 2;)
genome : 96,339,029 - 96,441,868 (102,840)
query : 1 - 2,936 (2,936/2,981)
8 exons
identity = 0.993
5'(0.961;1.000;1.000;0.961;0.999)3'
coverage = 1.000
EC number :
EC 1.14.11.-
InterPro :
IPR001965 : Zinc finger, PHD-type
IPR011011 : Zinc finger, FYVE/PHD-type
IPR019786 : Zinc finger, PHD-type, conserved site
IPR019787 : Zinc finger, PHD-finger
GO :
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto 3, extr 2, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008184)
HIX0008184
HIT000028993
(
AL834263
)
Representative transcript
(Lysine-specific demethylase PHF2; EC=1.14.11.-; GRC5; PHD finger protein 2;)
genome : 96,339,058 - 96,441,866 (102,809)
query : 1 - 5,213 (5,213/5,252)
22 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.961;0.998)3'
coverage = 1.000
EC number :
EC 1.14.11.-
InterPro :
IPR001965 : Zinc finger, PHD-type
IPR003347 : JmjC domain
IPR011011 : Zinc finger, FYVE/PHD-type
IPR019787 : Zinc finger, PHD-finger
GO :
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008184)
HIX0008184
HIT000436028
(
BC152437
)
(JmjC domain containing protein.)
genome : 96,392,271 - 96,441,866 (49,596)
query : 156 - 5,254 (5,099/5,271)
21 exons
identity = 0.996
5'(0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.961;0.999)3'
coverage = 0.970
InterPro :
IPR003347 : JmjC domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto_nucl 16, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008184)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC051633
Danio
sp. (Zebrafish) : BC060927
Gallus
sp. (Chicken) : CR406187
Equus
sp. (Horse) : ENSECAT00000019597
Oryzias
sp. (Medaka) : ENSORLT00000016308
Pongo
sp. (Orangutan) : ENSPPYT00000022621
Pan
sp. (Chimpanzee) : ENSPTRT00000043615
Tetraodon
sp. (Tetraodon) : GSTENT00012857001
Takifugu
sp. (Fugu) : SINFRUT00000158858
Monodelphis
sp. (Opossum) : XM_001378984
Rattus
sp. (Rat) : XM_225206
Canis
sp. (Dog) : XM_541324
Bos
sp. (Cow) : XM_617909
Macaca
sp. (Macaque) : XR_013665
HIX0008184
HIT000000387
(
AB014562
)
(Conserved hypothetical protein.)
genome : 96,392,271 - 96,441,865 (49,595)
query : 156 - 5,253 (5,098/5,253)
21 exons
identity = 0.996
5'(0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.961;0.999)3'
coverage = 0.970
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto_nucl 16, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008184)
HIX0008184
HIT000489485
(
AK294861
)
(Lysine-specific demethylase PHF2; EC=1.14.11.-; GRC5; PHD finger protein 2;)
genome : 96,425,206 - 96,440,188 (14,983)
query : 1 - 1,824 (1,824/1,824)
10 exons
identity = 0.991
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.958;1.000)3'
coverage = 1.000
EC number :
EC 1.14.11.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto_nucl 17.5, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008184)
HIX0008184
HIT000091464
(
BC028051
)
(Lysine-specific demethylase PHF2; EC=1.14.11.-; GRC5; PHD finger protein 2;)
genome : 96,425,257 - 96,441,866 (16,610)
query : 22 - 1,615 (1,594/1,639)
10 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.981;0.997)3'
coverage = 0.987
EC number :
EC 1.14.11.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26.5, cyto_nucl 18.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008184)
HIX0209140
eHIT000023663 ( ESTsASS_9_38 )
Representative transcript
(Non-protein coding transcript.)
genome : 96,433,426 - 96,434,572 (1,147)
query : 1 - 397 (397/397)
3 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209140)
ESTs used for assembly :
BF056723
HIX0008184
HIT000099122
(
BC050112
)
(Lysine-specific demethylase PHF2; EC=1.14.11.-; GRC5; PHD finger protein 2;)
genome : 96,437,876 - 96,441,776 (3,901)
query : 1 - 2,488 (2,488/2,505)
3 exons
identity = 0.993
5'(0.995;0.961;0.999)3'
coverage = 0.999
EC number :
EC 1.14.11.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008184)
HIX0209148
eHIT000024073 ( ESTsASS_9_448 )
Representative transcript
(Non-protein coding transcript.)
genome : 96,468,445 - 96,494,739 (26,295)
query : 1 - 906 (906/906)
3 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209148)
ESTs used for assembly :
BG204808,BG206971
HIX0209314
HIT000659517 (
NR_036254
)
(Non-protein coding transcript.)
genome : 96,581,639 - 96,581,703 (65)
query : 1 - 65 (65/65)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209314)
HIX0209314
HIT000696846 (
ENST00000584984
)
(Non-protein coding transcript.)
genome : 96,581,639 - 96,581,703 (65)
query : 1 - 65 (65/65)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209314)
HIX0170072
HIT000541705 (
ENST00000443771
)
(Hypothetical short protein.)
genome : 96,619,365 - 96,620,615 (1,251)
query : 1 - 391 (391/391)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 7, cyto_nucl 6.5, cysk 5, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170072)
HIX0034777
HIT000106570 (
ENST00000253968
)
(Homeobox protein BarH-like 1;)
genome : 96,713,628 - 96,717,654 (4,027)
query : 1 - 1,809 (1,809/1,809)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034777)
HIX0034777
HIT000208354 (
NM_021570
)
(Homeobox protein BarH-like 1;)
genome : 96,713,910 - 96,717,608 (3,699)
query : 1 - 1,481 (1,481/1,498)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034777)
HIX0034777
HIT000034376
(
BC009458
)
(Homeobox protein BarH-like 1;)
genome : 96,713,910 - 96,715,713 (1,804)
query : 7 - 1,328 (1,322/1,345)
3 exons
identity = 0.999
3'(1.000;1.000;0.998)5'
coverage = 0.995
InterPro :
IPR000047 : Helix-turn-helix motif
IPR017970 : Homeobox, conserved site
IPR020479 : Homeodomain, metazoa
GO :
0000976 : Molecular Function : transcription regulatory region sequence-specific DNA binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034777)
HIX0034777
HIT000261326
(
BC064363
)
Representative transcript
(Homeobox protein BarH-like 1;)
genome : 96,713,910 - 96,717,653 (3,744)
query : 1 - 1,526 (1,526/1,540)
4 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000047 : Helix-turn-helix motif
IPR017970 : Homeobox, conserved site
IPR020479 : Homeodomain, metazoa
GO :
0000976 : Molecular Function : transcription regulatory region sequence-specific DNA binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034777)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AJ297677
Danio
sp. (Zebrafish) : BC133991
Bos
sp. (Cow) : ENSBTAT00000005865
Gallus
sp. (Chicken) : ENSGALT00000008240
Pongo
sp. (Orangutan) : ENSPPYT00000022622
Takifugu
sp. (Fugu) : SINFRUT00000127708
Macaca
sp. (Macaque) : XM_001109954
Pan
sp. (Chimpanzee) : XM_001151327
Monodelphis
sp. (Opossum) : XM_001378893
Rattus
sp. (Rat) : XM_344575
Canis
sp. (Dog) : XM_847999
HIX0034777
HIT000074094
(
AF213356
)
(Homeobox protein BarH-like 2; Fragment;)
genome : 96,713,909 - 96,717,602 (3,694)
query : 8 - 1,468 (1,461/1,469)
4 exons
identity = 0.973
3'(0.980;1.000;0.993;0.940)5'
coverage = 0.995
InterPro :
IPR000047 : Helix-turn-helix motif
IPR017970 : Homeobox, conserved site
IPR020479 : Homeodomain, metazoa
GO :
0000976 : Molecular Function : transcription regulatory region sequence-specific DNA binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034777)
HIX0034777
HIT000503838 (
ENST00000401724
)
(Homeobox protein BarH-like 1;)
genome : 96,713,909 - 96,715,713 (1,805)
query : 1 - 1,323 (1,323/1,323)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034777)
HIX0034777
pHIT000107970 ( pHIT000107970 )
(Homeobox protein BarH-like 1;)
genome : 96,714,446 - 96,719,126 (4,681)
query : 1 - 627 (627/627)
4 exons
InterPro :
IPR000047 : Helix-turn-helix motif
IPR017970 : Homeobox, conserved site
IPR020479 : Homeodomain, metazoa
GO :
0000976 : Molecular Function : transcription regulatory region sequence-specific DNA binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034777)
CAGE tag :
T09R05B53480
HIX0035065
HIT000552528 (
ENST00000454594
)
(Non-protein coding transcript.)
genome : 96,717,879 - 96,721,422 (3,544)
query : 1 - 307 (307/307)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035065)
HIX0035065
HIT000092503
(
BC031969
)
Representative transcript
(Hypothetical protein.)
genome : 96,718,116 - 96,720,204 (2,089)
query : 1 - 1,445 (1,445/1,460)
2 exons
identity = 0.999
5'(0.999;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 8.5, cyto_nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035065)
HIX0035065
HIT000550979 (
ENST00000453045
)
(Hypothetical protein.)
genome : 96,718,116 - 96,720,204 (2,089)
query : 1 - 1,445 (1,445/1,445)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 9.5, extr_plas 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035065)
HIX0008186
HIT000084939
(
AY171233
)
(Conserved hypothetical protein.)
genome : 96,793,076 - 96,870,430 (77,355)
query : 6 - 2,814 (2,809/2,836)
10 exons
identity = 0.999
5'(1.000;0.989;1.000;1.000;1.000;1.000;0.999;
1.000;1.000;1.000)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 9.5, cyto 8, extr_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000317966 (
NM_177995
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 2.)
genome : 96,793,076 - 96,872,137 (79,062)
query : 1 - 4,516 (4,516/4,527)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 15.3333, cyto 9.5,
cyto_plas 6.16667
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000356640 (
ENST00000375360
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 2.)
genome : 96,793,076 - 96,872,138 (79,063)
query : 1 - 4,517 (4,517/4,517)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 15.3333, cyto 9.5,
cyto_plas 6.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000723389 (
NM_001253830
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 4.)
genome : 96,793,091 - 96,872,137 (79,047)
query : 1 - 4,486 (4,486/4,497)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 15.3333, cyto 9.5,
cyto_plas 6.16667
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000262453
(
BC067120
)
(Protein tyrosine phosphatase domain-containing protein 1; EC=3.1.3.-;)
genome : 96,793,091 - 96,872,112 (79,022)
query : 1 - 4,476 (4,476/4,490)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.998;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 9.5, cyto 8, extr_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000099354
(
BC051654
)
Representative transcript
(Protein tyrosine phosphatase domain-containing protein 1 isoform 2.)
genome : 96,793,095 - 96,872,137 (79,043)
query : 1 - 4,478 (4,478/4,515)
10 exons
identity = 0.998
5'(0.997;1.000;0.994;0.988;1.000;0.993;0.998;
0.995;0.991;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
InterPro :
IPR000340 : Dual specificity phosphatase, catalytic domain
IPR000387 : Protein-tyrosine/Dual specificity phosphatase
IPR016130 : Protein-tyrosine phosphatase, active site
IPR029021 : Protein-tyrosine phosphatase-like
GO :
0004725 : Molecular Function : protein tyrosine phosphatase activity
0006470 : Biological Process : protein dephosphorylation
0008138 : Molecular Function : protein tyrosine/serine/threonine phosphatase activity
0016311 : Biological Process : dephosphorylation
0016791 : Molecular Function : phosphatase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 15.3333, cyto 9.5,
cyto_plas 6.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB046040
Mus
sp. (Mouse) : AK132781
Danio
sp. (Zebrafish) : BC129183
Bos
sp. (Cow) : BC151750
Oryzias
sp. (Medaka) : ENSORLT00000016231
Pongo
sp. (Orangutan) : ENSPPYT00000022624
Rattus
sp. (Rat) : ENSRNOT00000060550
Tetraodon
sp. (Tetraodon) : GSTENT00033286001
Takifugu
sp. (Fugu) : SINFRUT00000133409
Pan
sp. (Chimpanzee) : XM_001147844
Monodelphis
sp. (Opossum) : XM_001378825
Equus
sp. (Horse) : XM_001492181
Gallus
sp. (Chicken) : XM_414322
Canis
sp. (Dog) : XM_533558
HIX0170093
HIT000543053 (
ENST00000445119
)
(Cytochrome c, class IA/ IB family protein.)
genome : 96,800,312 - 96,800,627 (316)
query : 1 - 316 (316/316)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 10, nucl 9.5, cyto 9.5, mito 8, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170093)
HIX0008186
HIT000213691 (
NM_152422
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 1.)
genome : 96,846,711 - 96,872,137 (25,427)
query : 1 - 4,434 (4,434/4,445)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto_mito 12.5, cyto_nucl 8.66667,
E.R._mito 8.66667, nucl 8.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000723388 (
NM_001253829
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 3.)
genome : 96,846,711 - 96,872,137 (25,427)
query : 1 - 4,440 (4,440/4,451)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto_mito 12.5, cyto_nucl 8.66667, nucl 8.5,
cyto 5.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000113061 (
ENST00000288976
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 1.)
genome : 96,846,746 - 96,872,136 (25,391)
query : 1 - 4,398 (4,398/4,398)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto_mito 12.5, cyto_nucl 8.66667,
E.R._mito 8.66667, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000092341
(
BC031279
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 4.)
genome : 96,846,746 - 96,870,183 (23,438)
query : 1 - 2,444 (2,444/2,457)
9 exons
identity = 0.998
5'(1.000;0.994;1.000;0.992;1.000;0.998;0.989;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 9.5, cyto 8, extr_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000429269
(
AK310403
)
(Conserved hypothetical protein.)
genome : 96,846,750 - 96,861,209 (14,460)
query : 4 - 2,421 (2,418/2,421)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 9.5, cyto 8, extr_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000422489
(
AK289692
)
(Conserved hypothetical protein.)
genome : 96,846,760 - 96,870,534 (23,775)
query : 1 - 2,788 (2,788/2,788)
9 exons
identity = 0.999
5'(1.000;1.000;0.988;1.000;0.993;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 9.5, cyto 8, extr_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000044785
(
AK124912
)
(Conserved hypothetical protein.)
genome : 96,846,825 - 96,860,803 (13,979)
query : 1 - 1,937 (1,937/1,937)
6 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.993;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 9.5, cyto 8, extr_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000094030
(
BC035699
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 2.)
genome : 96,859,601 - 96,870,180 (10,580)
query : 13 - 1,641 (1,629/1,656)
4 exons
identity = 0.999
5'(0.998;1.000;1.000;1.000)3'
coverage = 0.993
EC number :
EC 3.1.3.48
InterPro :
IPR029021 : Protein-tyrosine phosphatase-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, E.R. 4.5, E.R._golg 3, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000019486
(
AK094631
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 2.)
genome : 96,860,001 - 96,871,887 (11,887)
query : 1 - 2,935 (2,935/2,935)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.998)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 16, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000019628
(
AK094773
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 2.)
genome : 96,860,698 - 96,872,136 (11,439)
query : 1 - 2,488 (2,488/2,488)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 13, nucl 5.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000571671 (
ENST00000467049
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 4.)
genome : 96,862,369 - 96,870,194 (7,826)
query : 1 - 1,861 (1,861/1,861)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 8.5, cyto_nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0022327
HIT000022888
(
AK098034
)
Representative transcript
(Conserved hypothetical protein.)
genome : 96,872,894 - 96,874,539 (1,646)
query : 179 - 1,823 (1,645/1,823)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 0.902
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 10, mito 8.5, extr_plas 8.5, cyto 6, extr 5,
mito_pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022327)
HIX0218718
HIT000714436 (
ENST00000602703
)
(Conserved hypothetical protein.)
genome : 96,928,571 - 96,962,909 (34,339)
query : 1 - 235 (235/235)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
This sequence is too short.
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218718)
HIX0152696
HIT000343924 (
ENST00000362295
)
(Non-protein coding transcript.)
genome : 96,938,234 - 96,938,325 (92)
query : 1 - 92 (92/92)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0152696)
HIX0152696
HIT000657942 (
NR_029476
)
(Non-protein coding transcript.)
genome : 96,938,239 - 96,938,318 (80)
query : 1 - 80 (80/80)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0152696)
HIX0152696
HIT000447563
(
DQ581032
)
Representative transcript
(Non-protein coding transcript.)
genome : 96,938,244 - 96,938,273 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0152696)
HIX0152695
HIT000343831 (
ENST00000362202
)
(Non-protein coding transcript.)
genome : 96,938,629 - 96,938,715 (87)
query : 1 - 87 (87/87)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0152695)
HIX0152695
HIT000657949 (
NR_029483
)
(Non-protein coding transcript.)
genome : 96,938,629 - 96,938,715 (87)
query : 1 - 87 (87/87)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0152695)
HIX0152695
HIT000447562
(
DQ581031
)
Representative transcript
(Non-protein coding transcript.)
genome : 96,938,635 - 96,938,666 (32)
query : 1 - 32 (32/32)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0152695)
HIX0035125
HIT000261312
(
BC064349
)
Representative transcript
(Hypothetical short protein.)
genome : 96,938,740 - 96,940,173 (1,434)
query : 1 - 1,434 (1,434/1,448)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035125)
HIX0034844
HIT000714385 (
ENST00000602652
)
(Hypothetical protein.)
genome : 96,938,740 - 96,940,174 (1,435)
query : 1 - 1,435 (1,435/1,435)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034844)
HIX0034844
HIT000726517 (
NR_046163
)
(Hypothetical protein.)
genome : 96,938,853 - 96,966,848 (27,996)
query : 1 - 1,348 (1,348/1,362)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034844)
HIX0034844
HIT000726518 (
NR_046165
)
(Hypothetical protein.)
genome : 96,938,853 - 96,966,848 (27,996)
query : 1 - 1,289 (1,289/1,303)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034844)
HIX0034844
HIT000098233
(
BC045813
)
(Hypothetical protein.)
genome : 96,938,886 - 96,966,848 (27,963)
query : 1 - 1,256 (1,256/1,271)
3 exons
identity = 0.999
3'(0.999;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034844)
HIX0034844
HIT000714335 (
ENST00000602602
)
(Hypothetical protein.)
genome : 96,938,884 - 96,966,850 (27,967)
query : 1 - 1,260 (1,260/1,260)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034844)
HIX0034844
HIT000514243 (
ENST00000416309
)
(Hypothetical protein.)
genome : 96,938,884 - 96,966,825 (27,942)
query : 1 - 1,294 (1,294/1,294)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034844)
HIX0034844
HIT000094569
(
BC036695
)
Representative transcript
(Hypothetical protein.)
genome : 96,938,963 - 96,966,822 (27,860)
query : 6 - 1,217 (1,212/1,232)
4 exons
identity = 0.998
3'(0.999;1.000;1.000;0.979)5'
coverage = 0.996
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034844)
HIX0152797
HIT000343892 (
ENST00000362263
)
(Non-protein coding transcript.)
genome : 96,941,116 - 96,941,202 (87)
query : 1 - 87 (87/87)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0152797)
HIX0152797
HIT000657947 (
NR_029481
)
(Non-protein coding transcript.)
genome : 96,941,116 - 96,941,202 (87)
query : 1 - 87 (87/87)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0152797)
HIX0008187
HIT000319057 (
NM_194320
)
(Zinc finger protein 169;)
genome : 97,021,578 - 97,065,291 (43,714)
query : 1 - 3,556 (3,556/3,556)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008187)
HIX0008187
HIT000478769 (
ENST00000395395
)
(Zinc finger protein 169;)
genome : 97,021,593 - 97,063,726 (42,134)
query : 1 - 1,976 (1,976/1,986)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008187)
HIX0008187
HIT000422539
(
AK289742
)
Representative transcript
(Zinc finger protein 169;)
genome : 97,041,039 - 97,063,961 (22,923)
query : 24 - 2,201 (2,178/2,201)
4 exons
identity = 0.998
5'(1.000;1.000;1.000;0.998)3'
coverage = 0.990
InterPro :
IPR001909 : Krueppel-associated box
GO :
0003676 : Molecular Function : nucleic acid binding
0005622 : Cellular Component : intracellular
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008187)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK086737
Equus
sp. (Horse) : ENSECAT00000011525
Pongo
sp. (Orangutan) : ENSPPYT00000022625
Rattus
sp. (Rat) : ENSRNOT00000022932
Macaca
sp. (Macaque) : XM_001110562
Pan
sp. (Chimpanzee) : XM_520703
Canis
sp. (Dog) : XM_541320
Bos
sp. (Cow) : XM_609847
HIX0008187
HIT000018814
(
AK093956
)
(Zinc finger protein 84.)
genome : 97,041,039 - 97,063,725 (22,687)
query : 18 - 2,325 (2,308/2,325)
4 exons
identity = 0.999
5'(1.000;1.000;0.990;0.999)3'
coverage = 0.993
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008187)
HIX0008187
HIT000053212
(
BC047702
)
(Zinc finger protein 169;)
genome : 97,041,040 - 97,063,724 (22,685)
query : 5 - 1,943 (1,939/1,958)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.997
InterPro :
IPR001909 : Krueppel-associated box
GO :
0003676 : Molecular Function : nucleic acid binding
0005622 : Cellular Component : intracellular
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008187)
HIX0008187
HIT000133541 (
ENST00000340911
)
(Zinc finger protein 84.)
genome : 97,041,039 - 97,063,726 (22,688)
query : 1 - 2,309 (2,309/2,319)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 15.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008187)
HIX0008187
HIT000585518 (
ENST00000481550
)
(Zinc finger protein 169.)
genome : 97,041,039 - 97,056,726 (15,688)
query : 1 - 1,687 (1,687/1,697)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_nucl 7, nucl 5, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008187)
HIX0008187
HIT000595611 (
ENST00000492115
)
(Zinc finger protein 169.)
genome : 97,041,039 - 97,054,905 (13,867)
query : 1 - 372 (372/372)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 4, cyto_nucl 3, nucl 2.5, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008187)
HIX0008187
HIT000050730
(
BC019228
)
(Zinc finger protein 169.)
genome : 97,041,040 - 97,059,360 (18,321)
query : 1 - 575 (575/607)
4 exons
identity = 0.990
5'(1.000;1.000;1.000;0.977)3'
coverage = 0.995
InterPro :
IPR001909 : Krueppel-associated box
GO :
0003676 : Molecular Function : nucleic acid binding
0005622 : Cellular Component : intracellular
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 8.5, cyto 7.5, mito 6.5, nucl 4.5,
E.R._mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008187)
HIX0008187
HIT000356634 (
ENST00000375354
)
(Zinc finger protein 169.)
genome : 97,041,040 - 97,059,328 (18,289)
query : 1 - 543 (543/543)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 8.5, cyto 7.5, mito 6.5, nucl 4.5,
E.R._mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008187)
HIX0008187
HIT000051323
(
BC035060
)
(Zinc finger protein 169.)
genome : 97,041,040 - 97,058,127 (17,088)
query : 1 - 2,715 (2,715/2,728)
4 exons
identity = 0.990
5'(0.989;1.000;1.000;0.989)3'
coverage = 1.000
InterPro :
IPR001909 : Krueppel-associated box
GO :
0003676 : Molecular Function : nucleic acid binding
0005622 : Cellular Component : intracellular
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto_nucl 8.5, cyto 6, mito 6, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008187)
HIX0008187
HIT000584715 (
ENST00000480716
)
(Zinc finger protein 169.)
genome : 97,041,040 - 97,058,128 (17,089)
query : 1 - 2,716 (2,716/2,716)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto_nucl 8.5, cyto 6, mito 6, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008187)
HIX0008187
HIT000050561
(
BC011947
)
(Zinc finger protein 169.)
genome : 97,041,040 - 97,056,722 (15,683)
query : 1 - 1,682 (1,682/1,696)
3 exons
identity = 0.997
5'(1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR001909 : Krueppel-associated box
GO :
0003676 : Molecular Function : nucleic acid binding
0005622 : Cellular Component : intracellular
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_nucl 7, nucl 5, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008187)
HIX0008187
HIT000449745
(
DQ583214
)
(Non-protein coding transcript.)
genome : 97,041,049 - 97,041,078 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008187)
HIX0170283
HIT000556257 (
ENST00000458323
)
(Eukaryotic porin/Tom40 family protein.)
genome : 97,049,981 - 97,050,832 (852)
query : 1 - 852 (852/852)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, nucl 5, extr 2, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170283)
HIX0008187
HIT000042705
(
AK122832
)
(Zinc finger protein 169.)
genome : 97,061,083 - 97,065,291 (4,209)
query : 1 - 4,209 (4,209/4,209)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008187)
HIX0008188
HIT000129599 (
ENST00000335456
)
(Protein FAM22F;)
genome : 97,077,605 - 97,090,926 (13,322)
query : 1 - 4,195 (4,195/4,195)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 7.5, mito_pero 6.5, extr 6, E.R. 5, pero 4.5,
lyso 4, cyto 3, extr_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008188)
HIX0008188
HIT000024973
(
AL133071
)
(Protein FAM22F;)
genome : 97,080,478 - 97,087,806 (7,329)
query : 1 - 2,111 (2,111/2,134)
6 exons
identity = 0.997
3'(0.995;1.000;1.000;1.000;1.000;0.997)5'
coverage = 1.000
InterPro :
IPR024309 : Nuclear Testis protein, N-terminal
IPR024310 : Nuclear Testis protein/FAM22
IPR024313 : Nuclear Testis protein, C-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto 9, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008188)
HIX0008188
HIT000106459 (
ENST00000253262
)
(Protein FAM22F;)
genome : 97,080,478 - 97,090,926 (10,449)
query : 1 - 2,561 (2,561/2,561)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11, cyto_nucl 7.5, extr 6, mito 5, lyso 4,
E.R._mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008188)
HIX0008188
HIT000133837 (
ENST00000341207
)
(Protein FAM22F;)
genome : 97,080,478 - 97,090,926 (10,449)
query : 1 - 2,516 (2,516/2,516)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto_nucl 8, extr 5, mito 5, lyso 4,
E.R._mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008188)
HIX0008188
HIT000486215 (
NM_017561
)
(Protein FAM22F;)
genome : 97,080,478 - 97,090,926 (10,449)
query : 1 - 2,561 (2,561/2,561)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11, cyto_nucl 7.5, extr 6, mito 5, lyso 4,
E.R._mito 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008188)
HIX0008188
HIT000390180
(
BC130390
)
Representative transcript
(Protein FAM22F;)
genome : 97,080,648 - 97,090,926 (10,279)
query : 1 - 2,388 (2,388/2,388)
7 exons
identity = 0.997
3'(0.995;1.000;1.000;1.000;1.000;0.997;1.000)5'
coverage = 1.000
InterPro :
IPR024309 : Nuclear Testis protein, N-terminal
IPR024310 : Nuclear Testis protein/FAM22
IPR024313 : Nuclear Testis protein, C-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11, cyto_nucl 7.5, extr 6, mito 5, lyso 4,
E.R._mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008188)
Ortholog candidate ( ->
Evola
)
Pongo
sp. (Orangutan) : ENSPPYT00000022626
Macaca
sp. (Macaque) : XM_001085053
Macaca
sp. (Macaque) : XM_001110600
Pan
sp. (Chimpanzee) : XM_001151833
Canis
sp. (Dog) : XM_847877
HIX0008188
HIT000502240
(
BC143798
)
(Protein FAM22F;)
genome : 97,080,648 - 97,090,926 (10,279)
query : 1 - 2,388 (2,388/2,388)
7 exons
identity = 0.997
3'(0.995;1.000;1.000;1.000;1.000;0.997;1.000)5'
coverage = 1.000
InterPro :
IPR024309 : Nuclear Testis protein, N-terminal
IPR024310 : Nuclear Testis protein/FAM22
IPR024313 : Nuclear Testis protein, C-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11, cyto_nucl 7.5, extr 6, mito 5, lyso 4,
E.R._mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008188)
HIX0008189
HIT000020043
(
AK095188
)
Representative transcript
(Conserved hypothetical protein.)
genome : 97,094,758 - 97,123,230 (28,473)
query : 1 - 2,162 (2,162/2,162)
3 exons
identity = 0.999
5'(1.000;1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008189)
HIX0008189
HIT000552803 (
ENST00000454869
)
(Conserved hypothetical protein.)
genome : 97,094,758 - 97,123,230 (28,473)
query : 1 - 2,162 (2,162/2,162)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, nucl 14.5, cyto 10.5, extr 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008189)
HIX0008189
HIT000659094 (
NR_033937
)
(Conserved hypothetical protein.)
genome : 97,094,758 - 97,123,230 (28,473)
query : 1 - 2,162 (2,162/2,162)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008189)
HIX0169721
HIT000517390 (
ENST00000419456
)
(Conserved hypothetical protein.)
genome : 97,100,629 - 97,101,022 (394)
query : 1 - 394 (394/394)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto_nucl 4.5, nucl 4, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169721)
HIX0008190
HIT000356624 (
ENST00000375344
)
(Hippocampus abundant transcript-like protein 1.)
genome : 97,136,833 - 97,223,324 (86,492)
query : 1 - 3,420 (3,420/3,420)
12 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29, E.R._golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008190)
HIX0008190
HIT000210720 (
NM_032558
)
(Hippocampus abundant transcript-like protein 1.)
genome : 97,136,833 - 97,223,202 (86,370)
query : 1 - 3,298 (3,298/3,312)
12 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29, E.R._golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008190)
HIX0008190
HIT000338423
(
BC106062
)
Representative transcript
(Hippocampus abundant transcript-like protein 1.)
genome : 97,137,096 - 97,223,202 (86,107)
query : 1 - 3,035 (3,035/3,049)
12 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001958 : Tetracycline resistance protein, TetA/multidrug resistance protein MdtG
IPR005829 : Sugar transporter, conserved site
IPR011701 : Major facilitator superfamily
IPR020846 : Major facilitator superfamily domain
GO :
0005215 : Molecular Function : transporter activity
0005886 : Cellular Component : plasma membrane
0006810 : Biological Process : transport
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29, E.R._golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008190)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ720427
Mus
sp. (Mouse) : AK146596
Danio
sp. (Zebrafish) : BC056817
Equus
sp. (Horse) : ENSECAT00000012109
Oryzias
sp. (Medaka) : ENSORLT00000022528
Pongo
sp. (Orangutan) : ENSPPYT00000022628
Takifugu
sp. (Fugu) : SINFRUT00000144376
Takifugu
sp. (Fugu) : SINFRUT00000154090
Macaca
sp. (Macaque) : XM_001104588
Monodelphis
sp. (Opossum) : XM_001369774
Rattus
sp. (Rat) : XM_225093
Pan
sp. (Chimpanzee) : XM_520704
Canis
sp. (Dog) : XM_533564
Danio
sp. (Zebrafish) : XR_045174
HIX0008190
HIT000495239
(
AK300615
)
(Hippocampus abundant transcript-like protein 1.)
genome : 97,177,491 - 97,221,803 (44,313)
query : 1 - 1,373 (1,373/1,373)
10 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001958 : Tetracycline resistance protein, TetA/multidrug resistance protein MdtG
IPR005829 : Sugar transporter, conserved site
IPR011701 : Major facilitator superfamily
GO :
0005215 : Molecular Function : transporter activity
0005886 : Cellular Component : plasma membrane
0006810 : Biological Process : transport
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008190)
HIX0008190
HIT000526327 (
ENST00000428393
)
(Hippocampus abundant transcript-like protein 1.)
genome : 97,177,491 - 97,221,803 (44,313)
query : 1 - 1,373 (1,373/1,373)
10 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008190)
HIX0034777
pHIT000107970 ( pHIT000107970 )
(Homeobox protein BarH-like 1;)
genome : 96,714,446 - 96,719,126 (4,681)
query : 1 - 627 (627/627)
4 exons
InterPro :
IPR000047 : Helix-turn-helix motif
IPR017970 : Homeobox, conserved site
IPR020479 : Homeodomain, metazoa
GO :
0000976 : Molecular Function : transcription regulatory region sequence-specific DNA binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034777)
CAGE tag :
T09R05B53480
HIX0209140
eHIT000023663 ( ESTsASS_9_38 )
Representative transcript
(Non-protein coding transcript.)
genome : 96,433,426 - 96,434,572 (1,147)
query : 1 - 397 (397/397)
3 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209140)
ESTs used for assembly :
BF056723
HIX0209148
eHIT000024073 ( ESTsASS_9_448 )
Representative transcript
(Non-protein coding transcript.)
genome : 96,468,445 - 96,494,739 (26,295)
query : 1 - 906 (906/906)
3 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209148)
ESTs used for assembly :
BG204808,BG206971
AL359181.28
96400001-96543004 F +
NCBI
AL442224.17
96543005-96643961 F +
NCBI
AL357073.19
96643962-96745628 F +
NCBI
AL360020.15
96745629-96902338 F +
NCBI
AL158152.18
96902339-97014855 F +
NCBI
AL691447.18
97014856-97170774 F +
NCBI
AL358232.19
97170775-97200000 F -
NCBI