bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0170072
HIT000541705 (
ENST00000443771
)
(Hypothetical short protein.)
genome : 96,619,365 - 96,620,615 (1,251)
query : 1 - 391 (391/391)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 7, cyto_nucl 6.5, cysk 5, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170072)
HIX0034777
HIT000106570 (
ENST00000253968
)
(Homeobox protein BarH-like 1;)
genome : 96,713,628 - 96,717,654 (4,027)
query : 1 - 1,809 (1,809/1,809)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034777)
HIX0034777
HIT000208354 (
NM_021570
)
(Homeobox protein BarH-like 1;)
genome : 96,713,910 - 96,717,608 (3,699)
query : 1 - 1,481 (1,481/1,498)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034777)
HIX0034777
HIT000034376
(
BC009458
)
(Homeobox protein BarH-like 1;)
genome : 96,713,910 - 96,715,713 (1,804)
query : 7 - 1,328 (1,322/1,345)
3 exons
identity = 0.999
3'(1.000;1.000;0.998)5'
coverage = 0.995
InterPro :
IPR000047 : Helix-turn-helix motif
IPR017970 : Homeobox, conserved site
IPR020479 : Homeodomain, metazoa
GO :
0000976 : Molecular Function : transcription regulatory region sequence-specific DNA binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034777)
HIX0034777
HIT000261326
(
BC064363
)
Representative transcript
(Homeobox protein BarH-like 1;)
genome : 96,713,910 - 96,717,653 (3,744)
query : 1 - 1,526 (1,526/1,540)
4 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000047 : Helix-turn-helix motif
IPR017970 : Homeobox, conserved site
IPR020479 : Homeodomain, metazoa
GO :
0000976 : Molecular Function : transcription regulatory region sequence-specific DNA binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034777)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AJ297677
Danio
sp. (Zebrafish) : BC133991
Bos
sp. (Cow) : ENSBTAT00000005865
Gallus
sp. (Chicken) : ENSGALT00000008240
Pongo
sp. (Orangutan) : ENSPPYT00000022622
Takifugu
sp. (Fugu) : SINFRUT00000127708
Macaca
sp. (Macaque) : XM_001109954
Pan
sp. (Chimpanzee) : XM_001151327
Monodelphis
sp. (Opossum) : XM_001378893
Rattus
sp. (Rat) : XM_344575
Canis
sp. (Dog) : XM_847999
HIX0034777
HIT000074094
(
AF213356
)
(Homeobox protein BarH-like 2; Fragment;)
genome : 96,713,909 - 96,717,602 (3,694)
query : 8 - 1,468 (1,461/1,469)
4 exons
identity = 0.973
3'(0.980;1.000;0.993;0.940)5'
coverage = 0.995
InterPro :
IPR000047 : Helix-turn-helix motif
IPR017970 : Homeobox, conserved site
IPR020479 : Homeodomain, metazoa
GO :
0000976 : Molecular Function : transcription regulatory region sequence-specific DNA binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034777)
HIX0034777
HIT000503838 (
ENST00000401724
)
(Homeobox protein BarH-like 1;)
genome : 96,713,909 - 96,715,713 (1,805)
query : 1 - 1,323 (1,323/1,323)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034777)
HIX0034777
pHIT000107970 ( pHIT000107970 )
(Homeobox protein BarH-like 1;)
genome : 96,714,446 - 96,719,126 (4,681)
query : 1 - 627 (627/627)
4 exons
InterPro :
IPR000047 : Helix-turn-helix motif
IPR017970 : Homeobox, conserved site
IPR020479 : Homeodomain, metazoa
GO :
0000976 : Molecular Function : transcription regulatory region sequence-specific DNA binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034777)
CAGE tag :
T09R05B53480
HIX0035065
HIT000552528 (
ENST00000454594
)
(Non-protein coding transcript.)
genome : 96,717,879 - 96,721,422 (3,544)
query : 1 - 307 (307/307)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035065)
HIX0035065
HIT000092503
(
BC031969
)
Representative transcript
(Hypothetical protein.)
genome : 96,718,116 - 96,720,204 (2,089)
query : 1 - 1,445 (1,445/1,460)
2 exons
identity = 0.999
5'(0.999;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 8.5, cyto_nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035065)
HIX0035065
HIT000550979 (
ENST00000453045
)
(Hypothetical protein.)
genome : 96,718,116 - 96,720,204 (2,089)
query : 1 - 1,445 (1,445/1,445)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 9.5, extr_plas 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035065)
HIX0008186
HIT000084939
(
AY171233
)
(Conserved hypothetical protein.)
genome : 96,793,076 - 96,870,430 (77,355)
query : 6 - 2,814 (2,809/2,836)
10 exons
identity = 0.999
5'(1.000;0.989;1.000;1.000;1.000;1.000;0.999;
1.000;1.000;1.000)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 9.5, cyto 8, extr_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000317966 (
NM_177995
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 2.)
genome : 96,793,076 - 96,872,137 (79,062)
query : 1 - 4,516 (4,516/4,527)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 15.3333, cyto 9.5,
cyto_plas 6.16667
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000356640 (
ENST00000375360
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 2.)
genome : 96,793,076 - 96,872,138 (79,063)
query : 1 - 4,517 (4,517/4,517)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 15.3333, cyto 9.5,
cyto_plas 6.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000723389 (
NM_001253830
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 4.)
genome : 96,793,091 - 96,872,137 (79,047)
query : 1 - 4,486 (4,486/4,497)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 15.3333, cyto 9.5,
cyto_plas 6.16667
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000262453
(
BC067120
)
(Protein tyrosine phosphatase domain-containing protein 1; EC=3.1.3.-;)
genome : 96,793,091 - 96,872,112 (79,022)
query : 1 - 4,476 (4,476/4,490)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.998;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 9.5, cyto 8, extr_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000099354
(
BC051654
)
Representative transcript
(Protein tyrosine phosphatase domain-containing protein 1 isoform 2.)
genome : 96,793,095 - 96,872,137 (79,043)
query : 1 - 4,478 (4,478/4,515)
10 exons
identity = 0.998
5'(0.997;1.000;0.994;0.988;1.000;0.993;0.998;
0.995;0.991;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
InterPro :
IPR000340 : Dual specificity phosphatase, catalytic domain
IPR000387 : Protein-tyrosine/Dual specificity phosphatase
IPR016130 : Protein-tyrosine phosphatase, active site
IPR029021 : Protein-tyrosine phosphatase-like
GO :
0004725 : Molecular Function : protein tyrosine phosphatase activity
0006470 : Biological Process : protein dephosphorylation
0008138 : Molecular Function : protein tyrosine/serine/threonine phosphatase activity
0016311 : Biological Process : dephosphorylation
0016791 : Molecular Function : phosphatase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 15.3333, cyto 9.5,
cyto_plas 6.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB046040
Mus
sp. (Mouse) : AK132781
Danio
sp. (Zebrafish) : BC129183
Bos
sp. (Cow) : BC151750
Oryzias
sp. (Medaka) : ENSORLT00000016231
Pongo
sp. (Orangutan) : ENSPPYT00000022624
Rattus
sp. (Rat) : ENSRNOT00000060550
Tetraodon
sp. (Tetraodon) : GSTENT00033286001
Takifugu
sp. (Fugu) : SINFRUT00000133409
Pan
sp. (Chimpanzee) : XM_001147844
Monodelphis
sp. (Opossum) : XM_001378825
Equus
sp. (Horse) : XM_001492181
Gallus
sp. (Chicken) : XM_414322
Canis
sp. (Dog) : XM_533558
HIX0170093
HIT000543053 (
ENST00000445119
)
(Cytochrome c, class IA/ IB family protein.)
genome : 96,800,312 - 96,800,627 (316)
query : 1 - 316 (316/316)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 10, nucl 9.5, cyto 9.5, mito 8, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170093)
HIX0008186
HIT000213691 (
NM_152422
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 1.)
genome : 96,846,711 - 96,872,137 (25,427)
query : 1 - 4,434 (4,434/4,445)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto_mito 12.5, cyto_nucl 8.66667,
E.R._mito 8.66667, nucl 8.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000723388 (
NM_001253829
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 3.)
genome : 96,846,711 - 96,872,137 (25,427)
query : 1 - 4,440 (4,440/4,451)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto_mito 12.5, cyto_nucl 8.66667, nucl 8.5,
cyto 5.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000113061 (
ENST00000288976
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 1.)
genome : 96,846,746 - 96,872,136 (25,391)
query : 1 - 4,398 (4,398/4,398)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto_mito 12.5, cyto_nucl 8.66667,
E.R._mito 8.66667, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000092341
(
BC031279
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 4.)
genome : 96,846,746 - 96,870,183 (23,438)
query : 1 - 2,444 (2,444/2,457)
9 exons
identity = 0.998
5'(1.000;0.994;1.000;0.992;1.000;0.998;0.989;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 9.5, cyto 8, extr_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000429269
(
AK310403
)
(Conserved hypothetical protein.)
genome : 96,846,750 - 96,861,209 (14,460)
query : 4 - 2,421 (2,418/2,421)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 9.5, cyto 8, extr_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000422489
(
AK289692
)
(Conserved hypothetical protein.)
genome : 96,846,760 - 96,870,534 (23,775)
query : 1 - 2,788 (2,788/2,788)
9 exons
identity = 0.999
5'(1.000;1.000;0.988;1.000;0.993;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 9.5, cyto 8, extr_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000044785
(
AK124912
)
(Conserved hypothetical protein.)
genome : 96,846,825 - 96,860,803 (13,979)
query : 1 - 1,937 (1,937/1,937)
6 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.993;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 9.5, cyto 8, extr_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000094030
(
BC035699
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 2.)
genome : 96,859,601 - 96,870,180 (10,580)
query : 13 - 1,641 (1,629/1,656)
4 exons
identity = 0.999
5'(0.998;1.000;1.000;1.000)3'
coverage = 0.993
EC number :
EC 3.1.3.48
InterPro :
IPR029021 : Protein-tyrosine phosphatase-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, E.R. 4.5, E.R._golg 3, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000019486
(
AK094631
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 2.)
genome : 96,860,001 - 96,871,887 (11,887)
query : 1 - 2,935 (2,935/2,935)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.998)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 16, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000019628
(
AK094773
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 2.)
genome : 96,860,698 - 96,872,136 (11,439)
query : 1 - 2,488 (2,488/2,488)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 13, nucl 5.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0008186
HIT000571671 (
ENST00000467049
)
(Protein tyrosine phosphatase domain-containing protein 1 isoform 4.)
genome : 96,862,369 - 96,870,194 (7,826)
query : 1 - 1,861 (1,861/1,861)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 8.5, cyto_nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008186)
HIX0022327
HIT000022888
(
AK098034
)
Representative transcript
(Conserved hypothetical protein.)
genome : 96,872,894 - 96,874,539 (1,646)
query : 179 - 1,823 (1,645/1,823)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 0.902
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 10, mito 8.5, extr_plas 8.5, cyto 6, extr 5,
mito_pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022327)
HIX0218718
HIT000714436 (
ENST00000602703
)
(Conserved hypothetical protein.)
genome : 96,928,571 - 96,962,909 (34,339)
query : 1 - 235 (235/235)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
This sequence is too short.
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218718)
HIX0152696
HIT000343924 (
ENST00000362295
)
(Non-protein coding transcript.)
genome : 96,938,234 - 96,938,325 (92)
query : 1 - 92 (92/92)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0152696)
HIX0152696
HIT000657942 (
NR_029476
)
(Non-protein coding transcript.)
genome : 96,938,239 - 96,938,318 (80)
query : 1 - 80 (80/80)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0152696)
HIX0152696
HIT000447563
(
DQ581032
)
Representative transcript
(Non-protein coding transcript.)
genome : 96,938,244 - 96,938,273 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0152696)
HIX0152695
HIT000343831 (
ENST00000362202
)
(Non-protein coding transcript.)
genome : 96,938,629 - 96,938,715 (87)
query : 1 - 87 (87/87)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0152695)
HIX0152695
HIT000657949 (
NR_029483
)
(Non-protein coding transcript.)
genome : 96,938,629 - 96,938,715 (87)
query : 1 - 87 (87/87)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0152695)
HIX0152695
HIT000447562
(
DQ581031
)
Representative transcript
(Non-protein coding transcript.)
genome : 96,938,635 - 96,938,666 (32)
query : 1 - 32 (32/32)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0152695)
HIX0035125
HIT000261312
(
BC064349
)
Representative transcript
(Hypothetical short protein.)
genome : 96,938,740 - 96,940,173 (1,434)
query : 1 - 1,434 (1,434/1,448)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035125)
HIX0034844
HIT000714385 (
ENST00000602652
)
(Hypothetical protein.)
genome : 96,938,740 - 96,940,174 (1,435)
query : 1 - 1,435 (1,435/1,435)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034844)
HIX0034844
HIT000726517 (
NR_046163
)
(Hypothetical protein.)
genome : 96,938,853 - 96,966,848 (27,996)
query : 1 - 1,348 (1,348/1,362)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034844)
HIX0034844
HIT000726518 (
NR_046165
)
(Hypothetical protein.)
genome : 96,938,853 - 96,966,848 (27,996)
query : 1 - 1,289 (1,289/1,303)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034844)
HIX0034844
HIT000098233
(
BC045813
)
(Hypothetical protein.)
genome : 96,938,886 - 96,966,848 (27,963)
query : 1 - 1,256 (1,256/1,271)
3 exons
identity = 0.999
3'(0.999;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034844)
HIX0034844
HIT000714335 (
ENST00000602602
)
(Hypothetical protein.)
genome : 96,938,884 - 96,966,850 (27,967)
query : 1 - 1,260 (1,260/1,260)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034844)
HIX0034844
HIT000514243 (
ENST00000416309
)
(Hypothetical protein.)
genome : 96,938,884 - 96,966,825 (27,942)
query : 1 - 1,294 (1,294/1,294)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034844)
HIX0034844
HIT000094569
(
BC036695
)
Representative transcript
(Hypothetical protein.)
genome : 96,938,963 - 96,966,822 (27,860)
query : 6 - 1,217 (1,212/1,232)
4 exons
identity = 0.998
3'(0.999;1.000;1.000;0.979)5'
coverage = 0.996
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034844)
HIX0152797
HIT000343892 (
ENST00000362263
)
(Non-protein coding transcript.)
genome : 96,941,116 - 96,941,202 (87)
query : 1 - 87 (87/87)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0152797)
HIX0152797
HIT000657947 (
NR_029481
)
(Non-protein coding transcript.)
genome : 96,941,116 - 96,941,202 (87)
query : 1 - 87 (87/87)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0152797)
HIX0034777
pHIT000107970 ( pHIT000107970 )
(Homeobox protein BarH-like 1;)
genome : 96,714,446 - 96,719,126 (4,681)
query : 1 - 627 (627/627)
4 exons
InterPro :
IPR000047 : Helix-turn-helix motif
IPR017970 : Homeobox, conserved site
IPR020479 : Homeodomain, metazoa
GO :
0000976 : Molecular Function : transcription regulatory region sequence-specific DNA binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034777)
CAGE tag :
T09R05B53480
AL442224.17
96600001-96643961 F +
NCBI
AL357073.19
96643962-96745628 F +
NCBI
AL360020.15
96745629-96902338 F +
NCBI
AL158152.18
96902339-97000000 F +
NCBI