bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0000165
HIT000026024
(
AL137736
)
(Rho guanine nucleotide exchange factor 19.)
genome : 16,524,349 - 16,533,506 (9,158)
query : 1 - 2,035 (2,035/2,053)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 0.991
InterPro :
IPR000219 : Dbl homology (DH) domain
GO :
0005089 : Molecular Function : Rho guanyl-nucleotide exchange factor activity
0035023 : Biological Process : regulation of Rho protein signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 9, mito_nucl 9, mito 6, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000165)
HIX0000165
HIT000067585
(
AF088037
)
(Conserved hypothetical protein.)
genome : 16,524,351 - 16,524,828 (478)
query : 1 - 478 (478/488)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 11, nucl 10.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000165)
HIX0000165
HIT000582235 (
ENST00000478117
)
(Rho guanine nucleotide exchange factor 19.)
genome : 16,524,349 - 16,533,506 (9,158)
query : 1 - 2,035 (2,035/2,035)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 9, mito_nucl 9, mito 6, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000165)
HIX0161558
HIT000555743 (
ENST00000457809
)
(Hypothetical short protein.)
genome : 16,524,349 - 16,524,852 (504)
query : 1 - 439 (439/439)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161558)
HIX0000165
HIT000087978
(
BC012982
)
(Rho guanine nucleotide exchange factor 19.)
genome : 16,524,598 - 16,535,262 (10,665)
query : 1 - 2,606 (2,606/2,648)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.987;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR000219 : Dbl homology (DH) domain
IPR001452 : SH3 domain
IPR001849 : Pleckstrin homology domain
GO :
0005089 : Molecular Function : Rho guanyl-nucleotide exchange factor activity
0005515 : Molecular Function : protein binding
0035023 : Biological Process : regulation of Rho protein signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto_nucl 16.5, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000165)
HIX0000165
HIT000052437
(
BC040640
)
Representative transcript
(Rho guanine nucleotide exchange factor 19.)
genome : 16,524,599 - 16,539,104 (14,506)
query : 1 - 3,029 (3,029/3,045)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.999
InterPro :
IPR000219 : Dbl homology (DH) domain
IPR001452 : SH3 domain
IPR001849 : Pleckstrin homology domain
GO :
0005089 : Molecular Function : Rho guanyl-nucleotide exchange factor activity
0005515 : Molecular Function : protein binding
0035023 : Biological Process : regulation of Rho protein signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000165)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK053075
Canis
sp. (Dog) : ENSCAFT00000025253
Equus
sp. (Horse) : ENSECAT00000025819
Oryzias
sp. (Medaka) : ENSORLT00000014985
Pongo
sp. (Orangutan) : ENSPPYT00000002183
Pan
sp. (Chimpanzee) : ENSPTRT00000000462
Rattus
sp. (Rat) : ENSRNOT00000036739
Tetraodon
sp. (Tetraodon) : GSTENT00020601001
Takifugu
sp. (Fugu) : SINFRUT00000131705
Macaca
sp. (Macaque) : XM_001092728
Monodelphis
sp. (Opossum) : XM_001377077
Danio
sp. (Zebrafish) : XM_692570
Bos
sp. (Cow) : XM_869511
HIX0000165
HIT000214211 (
NM_153213
)
(Rho guanine nucleotide exchange factor 19.)
genome : 16,524,599 - 16,539,104 (14,506)
query : 1 - 3,029 (3,029/3,044)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 16.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000165)
HIX0000165
HIT000492331
(
AK297707
)
(Rho guanine nucleotide exchange factor 19.)
genome : 16,524,593 - 16,539,166 (14,574)
query : 1 - 2,534 (2,534/2,534)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;0.994;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000219 : Dbl homology (DH) domain
GO :
0005089 : Molecular Function : Rho guanyl-nucleotide exchange factor activity
0035023 : Biological Process : regulation of Rho protein signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000165)
HIX0000165
HIT000016148
(
AK091281
)
(Rho guanine nucleotide exchange factor 19.)
genome : 16,524,599 - 16,539,140 (14,542)
query : 1 - 2,165 (2,165/2,165)
9 exons
identity = 1.000
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000219 : Dbl homology (DH) domain
GO :
0005089 : Molecular Function : Rho guanyl-nucleotide exchange factor activity
0035023 : Biological Process : regulation of Rho protein signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000165)
HIX0000165
HIT000519495 (
ENST00000421561
)
(Rho guanine nucleotide exchange factor 19.)
genome : 16,524,599 - 16,539,140 (14,542)
query : 1 - 2,165 (2,165/2,165)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 17
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000165)
HIX0000165
HIT000110618 (
ENST00000270747
)
(Rho guanine nucleotide exchange factor 19.)
genome : 16,524,599 - 16,539,104 (14,506)
query : 1 - 3,029 (3,029/3,029)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000165)
HIX0000165
HIT000547429 (
ENST00000449495
)
(Rho guanine nucleotide exchange factor 19.)
genome : 16,531,306 - 16,533,038 (1,733)
query : 1 - 921 (921/921)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 16, nucl 6.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000165)
HIX0000165
HIT000582325 (
ENST00000478210
)
(Rho guanine nucleotide exchange factor 19.)
genome : 16,531,582 - 16,533,021 (1,440)
query : 1 - 665 (665/685)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 0.971
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 10, cyto 5.5, mito_nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000165)
HIX0000165
HIT000576329 (
ENST00000471928
)
(Rho guanine nucleotide exchange factor 19.)
genome : 16,532,122 - 16,533,477 (1,356)
query : 1 - 653 (653/653)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 11, cyto 10, nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000165)
HIX0000165
HIT000539719 (
ENST00000441785
)
(Rho guanine nucleotide exchange factor 19.)
genome : 16,532,344 - 16,533,021 (678)
query : 1 - 582 (582/582)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 9, extr_plas 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000165)
HIX0200102
HIT000540319 (
ENST00000442385
)
(Conserved hypothetical protein.)
genome : 16,542,404 - 16,543,655 (1,252)
query : 1 - 328 (328/328)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, plas 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200102)
HIX0200102
HIT000579614 (
ENST00000475369
)
(Anoctamin family protein.)
genome : 16,542,952 - 16,543,823 (872)
query : 1 - 355 (355/355)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11, mito 8, pero 6, plas 2, nucl 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200102)
HIX0200102
HIT000714319 (
ENST00000602586
)
(Conserved hypothetical protein.)
genome : 16,542,964 - 16,554,522 (11,559)
query : 1 - 1,720 (1,720/1,720)
17 exons
identity = 0.984
3'(1.000;1.000;1.000;1.000;0.949;1.000;0.969;
1.000;1.000;1.000;1.000;1.000;1.000;0.862;
0.930;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24, mito 4, pero 2, cyto_mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200102)
HIX0214136
HIT000356885 (
ENST00000375605
)
(Non-protein coding transcript.)
genome : 16,555,368 - 16,556,038 (671)
query : 1 - 252 (252/252)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214136)
HIX0199948
HIT000209995 (
NM_030907
)
(Small GTPase superfamily protein.)
genome : 16,558,182 - 16,563,659 (5,478)
query : 1 - 1,560 (1,560/1,582)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12, nucl 8, extr 4, mito 3, pero 3,
mito_pero 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199948)
HIX0199948
HIT000031306
(
BC002946
)
Representative transcript
(Small GTPase superfamily protein.)
genome : 16,558,195 - 16,563,446 (5,252)
query : 1 - 1,334 (1,334/1,352)
5 exons
identity = 0.999
3'(1.000;1.000;1.000;0.993;1.000)5'
coverage = 1.000
InterPro :
IPR001806 : Small GTPase superfamily
IPR013684 : Mitochondrial Rho-like
GO :
0005525 : Molecular Function : GTP binding
0005622 : Cellular Component : intracellular
0007264 : Biological Process : small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12, nucl 8, extr 4, mito 3, pero 3,
mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199948)
HIX0199948
HIT000033908
(
BC008702
)
(Small GTPase superfamily protein.)
genome : 16,558,195 - 16,563,446 (5,252)
query : 1 - 1,334 (1,334/1,352)
5 exons
identity = 0.999
3'(1.000;1.000;1.000;0.993;1.000)5'
coverage = 1.000
InterPro :
IPR001806 : Small GTPase superfamily
IPR013684 : Mitochondrial Rho-like
GO :
0005525 : Molecular Function : GTP binding
0005622 : Cellular Component : intracellular
0007264 : Biological Process : small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12, nucl 8, extr 4, mito 3, pero 3,
mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199948)
HIX0199948
HIT000356879 (
ENST00000375599
)
(Small GTPase superfamily protein.)
genome : 16,558,195 - 16,563,446 (5,252)
query : 1 - 1,334 (1,334/1,334)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12, nucl 8, extr 4, mito 3, pero 3,
mito_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199948)
HIX0199948
HIT000531948 (
ENST00000434014
)
(Mitochondrial Rho-like domain containing protein.)
genome : 16,559,005 - 16,563,154 (4,150)
query : 1 - 319 (319/336)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.949
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, extr 8, E.R._mito 8, mito_pero 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199948)
HIX0160488
HIT000519248 (
ENST00000421314
)
(Conserved hypothetical protein.)
genome : 16,567,708 - 16,567,893 (186)
query : 1 - 186 (186/186)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, nucl 4.5, cyto_nucl 4.5, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160488)
HIX0000167
HIT000008333
(
AK025059
)
(Conserved hypothetical protein.)
genome : 16,573,321 - 16,575,981 (2,661)
query : 1 - 2,661 (2,661/2,678)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto_nucl 4, nucl 3.5, cyto 3.5, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000167)
HIX0000167
HIT000356872 (
ENST00000375592
)
(F-box only protein 42; Just one F-box and Kelch domain-containing protein;)
genome : 16,573,334 - 16,678,949 (105,616)
query : 1 - 6,202 (6,202/6,202)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 16, cyto 3.5, mito 2, pero 2,
mito_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000167)
HIX0000167
HIT000001047
(
AB037753
)
(F-box only protein 42; Just one F-box and Kelch domain-containing protein;)
genome : 16,573,334 - 16,641,716 (68,383)
query : 1 - 5,788 (5,788/5,788)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto 12, mito 1.5, E.R._mito 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000167)
HIX0000167
HIT000024088
(
AL050213
)
(Hypothetical short protein.)
genome : 16,576,508 - 16,576,661 (154)
query : 1 - 154 (154/170)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000167)
HIX0000167
HIT000261240
(
BC063864
)
Representative transcript
(F-box only protein 42; Just one F-box and Kelch domain-containing protein;)
genome : 16,576,559 - 16,678,948 (102,390)
query : 1 - 2,976 (2,976/3,011)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.996;1.000)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR011498 : Kelch repeat type 2
IPR015915 : Kelch-type beta propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 16, cyto 3.5, mito 2, pero 2,
mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000167)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB173981
Mus
sp. (Mouse) : BC058667
Bos
sp. (Cow) : BC112852
Gallus
sp. (Chicken) : BX935690
Pongo
sp. (Orangutan) : CR858005
Takifugu
sp. (Fugu) : SINFRUT00000131342
Rattus
sp. (Rat) : XM_001072395
Pan
sp. (Chimpanzee) : XM_001153379
Monodelphis
sp. (Opossum) : XM_001365873
Equus
sp. (Horse) : XM_001488662
Canis
sp. (Dog) : XM_846933
HIX0000167
HIT000366881 (
NM_018994
)
(F-box only protein 42; Just one F-box and Kelch domain-containing protein;)
genome : 16,576,559 - 16,678,948 (102,390)
query : 1 - 2,976 (2,976/3,011)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.996;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 16, cyto 3.5, mito 2, pero 2,
mito_pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000167)
HIX0000167
HIT000092662
(
BC032439
)
(F-box only protein 42; Just one F-box and Kelch domain-containing protein;)
genome : 16,576,895 - 16,577,351 (457)
query : 1 - 457 (457/572)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000167)
HIX0000167
HIT000052812
(
BC043410
)
(F-box only protein 42; Just one F-box and Kelch domain-containing protein;)
genome : 16,576,895 - 16,678,951 (102,057)
query : 1 - 2,640 (2,640/2,654)
10 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.996;1.000)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR011498 : Kelch repeat type 2
IPR015915 : Kelch-type beta propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 16, cyto 3.5, mito 2, pero 2,
mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000167)
HIX0000167
HIT000086611
(
BC006174
)
(F-box only protein 42; Just one F-box and Kelch domain-containing protein;)
genome : 16,577,065 - 16,583,144 (6,080)
query : 1 - 1,642 (1,642/1,660)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR011498 : Kelch repeat type 2
IPR015915 : Kelch-type beta propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000167)
HIX0000167
HIT000098502
(
BC047296
)
(F-box only protein 42; Just one F-box and Kelch domain-containing protein;)
genome : 16,577,150 - 16,643,088 (65,939)
query : 1 - 2,465 (2,465/2,498)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR011498 : Kelch repeat type 2
IPR015915 : Kelch-type beta propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 16.5, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000167)
HIX0000167
HIT000028747
(
AL833874
)
(F-box only protein 42; Just one F-box and Kelch domain-containing protein;)
genome : 16,577,154 - 16,578,266 (1,113)
query : 1 - 1,113 (1,113/1,136)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 0.980
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto 8.5, cyto_nucl 8.5, nucl 7.5,
mito_pero 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000167)
HIX0000167
HIT000012212
(
AK055598
)
(F-box only protein 42; Just one F-box and Kelch domain-containing protein;)
genome : 16,577,150 - 16,678,949 (101,800)
query : 1 - 2,386 (2,386/2,386)
10 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;0.994;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR011498 : Kelch repeat type 2
IPR015915 : Kelch-type beta propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 16, cyto 3.5, mito 2, pero 2,
mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000167)
HIX0000167
HIT000542050 (
ENST00000444116
)
(F-box only protein 42; Just one F-box and Kelch domain-containing protein;)
genome : 16,577,577 - 16,580,088 (2,512)
query : 1 - 945 (945/945)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto 9, extr 5, cyto_golg 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000167)
HIX0000167
HIT000554098 (
ENST00000456164
)
(F-box only protein 42; Just one F-box and Kelch domain-containing protein;)
genome : 16,577,577 - 16,579,922 (2,346)
query : 1 - 1,153 (1,153/1,153)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto 9, extr 5, cyto_golg 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000167)
HIX0000167
HIT000462739
(
DQ596208
)
(Non-protein coding transcript.)
genome : 16,577,691 - 16,577,720 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000167)
HIX0000167
HIT000429537
(
AK310671
)
(F-box only protein 42; Just one F-box and Kelch domain-containing protein;)
genome : 16,578,857 - 16,678,921 (100,065)
query : 1 - 1,518 (1,518/1,518)
7 exons
identity = 0.999
3'(1.000;0.998;1.000;1.000;1.000;0.996;1.000)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR011498 : Kelch repeat type 2
IPR015915 : Kelch-type beta propeller
IPR015916 : Galactose oxidase, beta-propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 16.5, cyto 10, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000167)
HIX0000167
HIT000028119
(
AL833207
)
(F-box only protein 42; Just one F-box and Kelch domain-containing protein;)
genome : 16,618,821 - 16,641,862 (23,042)
query : 1 - 2,908 (2,908/2,924)
3 exons
identity = 0.995
3'(0.995;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR015915 : Kelch-type beta propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 13, cyto_nucl 11, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000167)
HIX0000167
HIT000582207 (
ENST00000478089
)
(F-box only protein 42; Just one F-box and Kelch domain-containing protein;)
genome : 16,618,809 - 16,641,862 (23,054)
query : 1 - 2,920 (2,920/2,920)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 13, cyto_nucl 11, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000167)
HIX0000168
HIT000579338 (
ENST00000475078
)
(Conserved hypothetical protein.)
genome : 16,679,070 - 16,719,850 (40,781)
query : 1 - 490 (490/490)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, mito 7, cyto 5, mito_nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000485985 (
NM_001114600
)
(SUZ domain-containing protein 1; Putative MAPK-activating protein PM18/PM20/PM22;)
genome : 16,693,525 - 16,724,643 (31,119)
query : 1 - 3,695 (3,695/3,695)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 15.5, nucl 10
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000725103 (
NM_001271869
)
(SUZ domain-containing protein 1 isoform 3.)
genome : 16,693,525 - 16,724,643 (31,119)
query : 1 - 3,692 (3,692/3,692)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, nucl 15
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000727632 (
NR_073500
)
(Conserved hypothetical protein.)
genome : 16,693,525 - 16,724,643 (31,119)
query : 1 - 3,390 (3,390/3,390)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 21, extr_plas 14.5, plas 6, mito 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000727633 (
NR_073501
)
(SUZ domain-containing protein 1 isoform 1.)
genome : 16,693,525 - 16,724,643 (31,119)
query : 1 - 3,766 (3,766/3,766)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 28.5, cyto_nucl 16
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000727634 (
NR_073502
)
(SUZ domain-containing protein 1 isoform 3.)
genome : 16,693,525 - 16,724,643 (31,119)
query : 1 - 3,645 (3,645/3,645)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, mito 13
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000727635 (
NR_073503
)
(SUZ domain-containing protein 1 isoform 1.)
genome : 16,693,525 - 16,724,643 (31,119)
query : 1 - 3,642 (3,642/3,642)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, nucl 6.5, cyto_nucl 6, cyto 4.5, extr 2,
pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000483954 (
ENST00000401088
)
(SUZ domain-containing protein 1; Putative MAPK-activating protein PM18/PM20/PM22;)
genome : 16,693,578 - 16,724,637 (31,060)
query : 1 - 3,636 (3,636/3,636)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 15.5, nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000575932 (
ENST00000471507
)
(SUZ domain-containing protein 1 isoform 3.)
genome : 16,693,583 - 16,721,901 (28,319)
query : 1 - 892 (892/892)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, nucl 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000483955 (
ENST00000401089
)
(SUZ domain-containing protein 1 isoform 3.)
genome : 16,693,720 - 16,724,640 (30,921)
query : 1 - 3,447 (3,447/3,447)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, mito 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000039710
(
BC023988
)
(SUZ domain-containing protein 1 isoform 3.)
genome : 16,693,720 - 16,722,864 (29,145)
query : 1 - 1,671 (1,671/1,701)
3 exons
identity = 0.999
5'(0.988;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR024642 : SUZ-C domain
IPR024771 : SUZ domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, mito 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000055529
(
BX640985
)
(SUZ domain-containing protein 1 isoform 3.)
genome : 16,693,726 - 16,724,640 (30,915)
query : 2 - 3,038 (3,037/3,060)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 14, plas 7, mito_pero 7, nucl 4, cyto 4,
cyto_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000590501 (
ENST00000486763
)
(SUZ domain-containing protein 1 isoform 3.)
genome : 16,693,730 - 16,721,634 (27,905)
query : 1 - 549 (549/549)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, nucl 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000246681
(
AJ295987
)
(SUZ domain containing protein.)
genome : 16,693,737 - 16,724,639 (30,903)
query : 1 - 3,429 (3,429/3,429)
3 exons
identity = 0.992
5'(1.000;0.996;0.992)3'
coverage = 1.000
InterPro :
IPR024642 : SUZ-C domain
IPR024771 : SUZ domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, nucl 6.5, cyto_nucl 6, cyto 4.5, extr 2,
pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000242179
(
AB097042
)
(SUZ domain-containing protein 1 isoform 3.)
genome : 16,693,738 - 16,722,865 (29,128)
query : 2 - 1,546 (1,545/1,585)
4 exons
identity = 0.996
5'(1.000;1.000;0.995;1.000)3'
coverage = 0.999
InterPro :
IPR024642 : SUZ-C domain
IPR024771 : SUZ domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, mito 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000242180
(
AB097043
)
(SUZ domain-containing protein 1 isoform 3.)
genome : 16,693,738 - 16,722,865 (29,128)
query : 2 - 1,546 (1,545/1,585)
4 exons
identity = 0.996
5'(1.000;1.000;0.995;1.000)3'
coverage = 0.999
InterPro :
IPR024642 : SUZ-C domain
IPR024771 : SUZ domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, mito 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000242183
(
AB097046
)
(SUZ domain-containing protein 1; Putative MAPK-activating protein PM18/PM20/PM22;)
genome : 16,693,738 - 16,722,862 (29,125)
query : 2 - 1,702 (1,701/1,731)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR024642 : SUZ-C domain
IPR024771 : SUZ domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 15.5, nucl 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000492550
(
AK297926
)
Representative transcript
(SUZ domain-containing protein 1 isoform 1.)
genome : 16,693,738 - 16,721,916 (28,179)
query : 2 - 690 (689/690)
5 exons
identity = 0.953
5'(1.000;1.000;1.000;1.000;0.887)3'
coverage = 0.999
InterPro :
IPR024771 : SUZ domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 15, nucl 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ720259
Mus
sp. (Mouse) : BC066992
Rattus
sp. (Rat) : BC083784
Danio
sp. (Zebrafish) : BC095055
Bos
sp. (Cow) : BC112817
Pongo
sp. (Orangutan) : CR859294
Monodelphis
sp. (Opossum) : ENSMODT00000004000
Oryzias
sp. (Medaka) : ENSORLT00000000258
Tetraodon
sp. (Tetraodon) : GSTENT00020589001
Takifugu
sp. (Fugu) : SINFRUT00000167574
Macaca
sp. (Macaque) : XM_001086708
Equus
sp. (Horse) : XM_001488595
Pan
sp. (Chimpanzee) : XM_513067
Canis
sp. (Dog) : XM_846908
HIX0000168
HIT000427653
(
AK308787
)
(Conserved hypothetical protein.)
genome : 16,693,738 - 16,723,023 (29,286)
query : 1 - 1,557 (1,557/1,557)
2 exons
identity = 0.999
5'(1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, extr 14, cyto_nucl 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000023925
(
AL050028
)
(SUZ domain-containing protein 1 isoform 1.)
genome : 16,693,738 - 16,722,856 (29,119)
query : 1 - 1,642 (1,642/1,651)
3 exons
identity = 0.996
5'(1.000;1.000;0.995)3'
coverage = 1.000
InterPro :
IPR024642 : SUZ-C domain
IPR024771 : SUZ domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, nucl 6.5, cyto_nucl 6, cyto 4.5, extr 2,
pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000356870 (
ENST00000375590
)
(SUZ domain-containing protein 1 isoform 1.)
genome : 16,693,738 - 16,722,607 (28,870)
query : 1 - 1,343 (1,343/1,343)
4 exons
identity = 0.994
5'(1.000;1.000;0.848;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, mito 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000493200
(
AK298576
)
(SUZ domain-containing protein 1 isoform 1.)
genome : 16,693,738 - 16,722,607 (28,870)
query : 1 - 1,344 (1,344/1,344)
4 exons
identity = 0.998
5'(1.000;0.996;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR024771 : SUZ domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, mito 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000579789 (
ENST00000475554
)
(SUZ domain-containing protein 1 isoform 1.)
genome : 16,693,738 - 16,721,667 (27,930)
query : 1 - 583 (583/583)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, cyto 10.5, cyto_nucl 7.5, extr 4, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000580617 (
ENST00000476423
)
(Conserved hypothetical protein.)
genome : 16,693,738 - 16,719,880 (26,143)
query : 1 - 567 (567/567)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, mito 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000499818
(
AK316205
)
(SUZ domain-containing protein 1 isoform 3.)
genome : 16,693,739 - 16,722,596 (28,858)
query : 1 - 1,322 (1,322/1,322)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR024771 : SUZ domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, mito 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000261944
(
BC065538
)
(SUZ domain-containing protein 1 isoform 3.)
genome : 16,693,740 - 16,722,088 (28,349)
query : 1 - 875 (875/954)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR024642 : SUZ-C domain
IPR024771 : SUZ domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, mito 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000576731 (
ENST00000472351
)
(SUZ domain-containing protein 1 isoform 1.)
genome : 16,693,742 - 16,721,885 (28,144)
query : 1 - 791 (791/791)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 28.5, cyto_nucl 16
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000242181
(
AB097044
)
(SUZ domain-containing protein 1 isoform 1.)
genome : 16,693,743 - 16,722,088 (28,346)
query : 1 - 869 (869/904)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR024642 : SUZ-C domain
IPR024771 : SUZ domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, nucl 6.5, cyto_nucl 6, cyto 4.5, extr 2,
pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000242182
(
AB097045
)
(SUZ domain-containing protein 1 isoform 1.)
genome : 16,693,743 - 16,722,088 (28,346)
query : 1 - 869 (869/904)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR024642 : SUZ-C domain
IPR024771 : SUZ domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, nucl 6.5, cyto_nucl 6, cyto 4.5, extr 2,
pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000595842 (
ENST00000492354
)
(SUZ domain-containing protein 1 isoform 1.)
genome : 16,693,760 - 16,724,637 (30,878)
query : 1 - 3,401 (3,401/3,401)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, nucl 6.5, cyto_nucl 6, cyto 4.5, extr 2,
pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000087526
(
BC010631
)
(SUZ domain-containing protein 1 isoform 1.)
genome : 16,693,762 - 16,724,637 (30,876)
query : 1 - 3,399 (3,399/3,416)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR024642 : SUZ-C domain
IPR024771 : SUZ domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, nucl 6.5, cyto_nucl 6, cyto 4.5, extr 2,
pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000576833 (
ENST00000472461
)
(SUZ domain-containing protein 1 isoform 1.)
genome : 16,694,206 - 16,721,768 (27,563)
query : 1 - 843 (843/843)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 26, mito_nucl 15.3333, mito_pero 13.8333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0178376
HIT000543623 (
ENST00000445689
)
(Ribosomal protein L22e family protein.)
genome : 16,695,645 - 16,696,025 (381)
query : 1 - 381 (381/381)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 10, nucl 8.5, cyto_nucl 8, cyto 6.5, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0178376)
HIX0023603
HIT000594942 (
ENST00000491418
)
(Spermatogenesis-associated protein 21;)
genome : 16,713,612 - 16,730,340 (16,729)
query : 7 - 661 (655/661)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 0.991
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, mito 4, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023603)
HIX0023603
HIT000047979
(
AK128106
)
(Spermatogenesis-associated protein 21;)
genome : 16,722,176 - 16,763,888 (41,713)
query : 1 - 3,619 (3,619/3,619)
17 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.992;1.000;
1.000;1.000;1.000;0.998;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 14.5, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023603)
HIX0023603
HIT000570876 (
ENST00000466212
)
(Spermatogenesis-associated protein 21;)
genome : 16,722,176 - 16,763,888 (41,713)
query : 1 - 3,619 (3,619/3,619)
17 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 14.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023603)
HIX0000168
HIT000023102
(
AK098272
)
(Hypothetical short protein.)
genome : 16,723,035 - 16,724,639 (1,605)
query : 1 - 1,605 (1,605/1,605)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 8.5, cyto_nucl 8, nucl 6.5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000454991
(
DQ588460
)
(Non-protein coding transcript.)
genome : 16,723,592 - 16,723,621 (30)
query : 1 - 30 (30/30)
1 exon
identity = 0.967
5'(0.967)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0000168
HIT000027849
(
AL832937
)
(Hypothetical short protein.)
genome : 16,723,598 - 16,724,640 (1,043)
query : 1 - 1,043 (1,043/1,060)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 8.5, cyto_nucl 8, nucl 6.5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000168)
HIX0023603
HIT000129622 (
ENST00000335496
)
(Spermatogenesis-associated protein 21;)
genome : 16,725,138 - 16,763,919 (38,782)
query : 1 - 2,015 (2,015/2,015)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, nucl 7, pero 7, cyto_mito 6.5, plas 4.5,
extr_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023603)
HIX0023603
HIT000251794
(
AY327405
)
Representative transcript
(Spermatogenesis-associated protein 21;)
genome : 16,725,138 - 16,763,919 (38,782)
query : 1 - 2,015 (2,015/2,015)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, nucl 7, pero 7, cyto_mito 6.5, plas 4.5,
extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023603)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AB168097
Mus
sp. (Mouse) : AK077155
Canis
sp. (Dog) : ENSCAFT00000025199
Macaca
sp. (Macaque) : ENSMMUT00000047538
Pongo
sp. (Orangutan) : ENSPPYT00000002176
Pongo
sp. (Orangutan) : ENSPPYT00000012360
Bos
sp. (Cow) : XM_001256126
Equus
sp. (Horse) : XM_001488482
Pan
sp. (Chimpanzee) : XM_524520
HIX0023603
HIT000319411 (
NM_198546
)
(Spermatogenesis-associated protein 21;)
genome : 16,725,138 - 16,763,919 (38,782)
query : 1 - 2,015 (2,015/2,015)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, nucl 7, pero 7, cyto_mito 6.5, plas 4.5,
extr_plas 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023603)
HIX0023603
HIT000503294
(
BC150598
)
(Spermatogenesis-associated protein 21;)
genome : 16,725,162 - 16,763,685 (38,524)
query : 1 - 1,773 (1,773/1,773)
11 exons
identity = 0.999
3'(1.000;0.994;1.000;1.000;1.000;0.993;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 9.5, nucl 7.5, plas 6.5,
extr_plas 4.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023603)
HIX0023603
HIT000639445 (
ENST00000540400
)
(Spermatogenesis-associated protein 21;)
genome : 16,725,162 - 16,763,685 (38,524)
query : 1 - 1,773 (1,773/1,773)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 9.5, plas 6.5, nucl 6.5,
extr_plas 4.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023603)
HIX0023603
HIT000430480
(
AK311614
)
(Conserved hypothetical protein.)
genome : 16,732,126 - 16,763,919 (31,794)
query : 1 - 1,923 (1,923/1,923)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 17, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023603)
HIX0023603
HIT000090508
(
BC022039
)
(Conserved hypothetical protein.)
genome : 16,751,399 - 16,763,911 (12,513)
query : 6 - 1,142 (1,137/1,170)
5 exons
identity = 0.999
3'(0.997;1.000;1.000;1.000;1.000)5'
coverage = 0.995
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 16.5, nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023603)
HIX0023603
HIT000356857 (
ENST00000375577
)
(Conserved hypothetical protein.)
genome : 16,751,399 - 16,763,911 (12,513)
query : 1 - 1,136 (1,136/1,136)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 16.5, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023603)
HIX0000170
HIT000206924 (
NM_018090
)
(Adaptin ear-binding coat-associated protein 2; NECAP endocytosis-associated protein 2; NECAP-2;)
genome : 16,767,167 - 16,786,583 (19,417)
query : 1 - 2,080 (2,080/2,092)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14.5, nucl 8.5, cysk 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000561270 (
NM_001145277
)
(Adaptin ear-binding coat-associated protein 2; NECAP endocytosis-associated protein 2; NECAP-2;)
genome : 16,767,167 - 16,786,583 (19,417)
query : 1 - 2,004 (2,004/2,016)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 15, nucl 7.5, extr 2, cysk 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000561271 (
NM_001145278
)
(Adaptin ear-binding coat-associated protein 2; NECAP endocytosis-associated protein 2; NECAP-2;)
genome : 16,767,167 - 16,786,583 (19,417)
query : 1 - 2,002 (2,002/2,014)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27.5, cyto_nucl 16
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000130382 (
ENST00000337132
)
(Adaptin ear-binding coat-associated protein 2; NECAP endocytosis-associated protein 2; NECAP-2;)
genome : 16,767,167 - 16,786,573 (19,407)
query : 1 - 2,070 (2,070/2,070)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14.5, nucl 8.5, cysk 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000604756 (
ENST00000504551
)
(Adaptin ear-binding coat-associated protein 1.)
genome : 16,767,216 - 16,785,503 (18,288)
query : 1 - 768 (768/768)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 15.5, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000331124
(
AK223344
)
(Adaptin ear-binding coat-associated protein 2; NECAP endocytosis-associated protein 2; NECAP-2;)
genome : 16,767,219 - 16,786,573 (19,355)
query : 1 - 1,292 (1,292/1,331)
9 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;0.994;1.000;
1.000;0.997)3'
coverage = 1.000
InterPro :
IPR012466 : Adaptin ear-binding coat-associated protein 1 NECAP-1
GO :
0006897 : Biological Process : endocytosis
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 14.5, nucl 9.5, cysk 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000505712 (
ENST00000406746
)
(Adaptin ear-binding coat-associated protein 2; NECAP endocytosis-associated protein 2; NECAP-2;)
genome : 16,767,219 - 16,786,572 (19,354)
query : 1 - 1,291 (1,291/1,291)
9 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14.5, nucl 8.5, cysk 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000555656 (
ENST00000457722
)
(Adaptin ear-binding coat-associated protein 2; NECAP endocytosis-associated protein 2; NECAP-2;)
genome : 16,767,219 - 16,785,568 (18,350)
query : 1 - 935 (935/935)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27.5, cyto_nucl 16
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000495388
(
AK300764
)
(Adaptin ear-binding coat-associated protein 2; NECAP endocytosis-associated protein 2; NECAP-2;)
genome : 16,767,221 - 16,786,346 (19,126)
query : 1 - 1,634 (1,634/1,634)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR012466 : Adaptin ear-binding coat-associated protein 1 NECAP-1
GO :
0006897 : Biological Process : endocytosis
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 12.5, cyto_nucl 9, nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000496851
(
AK302227
)
(Adaptin ear-binding coat-associated protein 2 isoform 2.)
genome : 16,767,221 - 16,785,568 (18,348)
query : 1 - 933 (933/933)
8 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;0.994;1.000;
0.996)3'
coverage = 1.000
InterPro :
IPR012466 : Adaptin ear-binding coat-associated protein 1 NECAP-1
GO :
0006897 : Biological Process : endocytosis
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 28.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000006819
(
AK023545
)
(Adaptin ear-binding coat-associated protein 2; NECAP endocytosis-associated protein 2; NECAP-2;)
genome : 16,767,231 - 16,786,572 (19,342)
query : 1 - 1,929 (1,929/1,929)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR012466 : Adaptin ear-binding coat-associated protein 1 NECAP-1
GO :
0006897 : Biological Process : endocytosis
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 15, nucl 7.5, extr 2, cysk 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000541914 (
ENST00000443980
)
(Adaptin ear-binding coat-associated protein 2; NECAP endocytosis-associated protein 2; NECAP-2;)
genome : 16,767,231 - 16,786,572 (19,342)
query : 1 - 1,929 (1,929/1,929)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 15, nucl 7.5, extr 2, cysk 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000590146 (
ENST00000486390
)
(Adaptin ear-binding coat-associated protein 1.)
genome : 16,767,231 - 16,768,114 (884)
query : 1 - 572 (572/572)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000605028 (
ENST00000504858
)
(Adaptin ear-binding coat-associated protein 2; NECAP endocytosis-associated protein 2; NECAP-2;)
genome : 16,767,232 - 16,778,510 (11,279)
query : 1 - 727 (727/727)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12, nucl 6.5, extr 5, cysk 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000038470
(
BC018914
)
(Adaptin ear-binding coat-associated protein 2; NECAP endocytosis-associated protein 2; NECAP-2;)
genome : 16,767,233 - 16,786,573 (19,341)
query : 1 - 2,004 (2,004/2,037)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.999)3'
coverage = 1.000
InterPro :
IPR012466 : Adaptin ear-binding coat-associated protein 1 NECAP-1
GO :
0006897 : Biological Process : endocytosis
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14.5, nucl 8.5, cysk 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000003756
(
AK001282
)
Representative transcript
(Adaptin ear-binding coat-associated protein 2; NECAP endocytosis-associated protein 2; NECAP-2;)
genome : 16,767,238 - 16,786,572 (19,335)
query : 4 - 1,790 (1,787/1,790)
9 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.999)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14.5, nucl 8.5, cysk 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ719317
Mus
sp. (Mouse) : BC037069
Rattus
sp. (Rat) : BC061826
Bos
sp. (Cow) : BC109915
Tetraodon
sp. (Tetraodon) : CR666632
Monodelphis
sp. (Opossum) : ENSMODT00000033411
Oryzias
sp. (Medaka) : ENSORLT00000007463
Pongo
sp. (Orangutan) : ENSPPYT00000002175
Pan
sp. (Chimpanzee) : ENSPTRT00000000470
Takifugu
sp. (Fugu) : SINFRUT00000179043
Macaca
sp. (Macaque) : XM_001087060
Danio
sp. (Zebrafish) : XM_001343898
Equus
sp. (Horse) : XM_001914692
Canis
sp. (Dog) : XM_535393
HIX0000170
HIT000037785
(
BC017014
)
(Adaptin ear-binding coat-associated protein 2; NECAP endocytosis-associated protein 2; NECAP-2;)
genome : 16,767,237 - 16,786,570 (19,334)
query : 2 - 1,998 (1,997/2,027)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.999)3'
coverage = 0.999
InterPro :
IPR012466 : Adaptin ear-binding coat-associated protein 1 NECAP-1
GO :
0006897 : Biological Process : endocytosis
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14.5, nucl 8.5, cysk 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000608597 (
ENST00000508680
)
(Adaptin ear-binding coat-associated protein 2; NECAP endocytosis-associated protein 2; NECAP-2;)
genome : 16,767,237 - 16,774,845 (7,609)
query : 1 - 470 (470/470)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 14, nucl 10.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000595593 (
ENST00000492095
)
(Adaptin ear-binding coat-associated protein 2; NECAP endocytosis-associated protein 2; NECAP-2;)
genome : 16,767,238 - 16,786,572 (19,335)
query : 1 - 1,787 (1,787/1,787)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14.5, nucl 8.5, cysk 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000564602 (
ENST00000459640
)
(Adaptin ear-binding coat-associated protein 2; NECAP endocytosis-associated protein 2; NECAP-2;)
genome : 16,767,251 - 16,785,451 (18,201)
query : 1 - 981 (981/981)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 12, cysk 5, nucl 2.5,
cysk_plas 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000007742
(
AK024468
)
(Adaptin ear-binding coat-associated protein 1.)
genome : 16,767,253 - 16,786,572 (19,320)
query : 1 - 4,621 (4,621/4,621)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.999;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR012466 : Adaptin ear-binding coat-associated protein 1 NECAP-1
GO :
0006897 : Biological Process : endocytosis
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 11.5, cysk 6, nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000599568 (
ENST00000496239
)
(Adaptin ear-binding coat-associated protein 1.)
genome : 16,767,253 - 16,786,572 (19,320)
query : 1 - 4,619 (4,619/4,619)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 11.5, cysk 6, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000612756 (
ENST00000513161
)
(Adaptin ear-binding coat-associated protein 2 isoform 2.)
genome : 16,767,267 - 16,785,503 (18,237)
query : 1 - 713 (713/713)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_nucl 15, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000005212
(
AK021938
)
(Adaptin ear-binding coat-associated protein 2; NECAP endocytosis-associated protein 2; NECAP-2;)
genome : 16,775,642 - 16,786,572 (10,931)
query : 1 - 1,545 (1,545/1,545)
4 exons
identity = 0.998
5'(1.000;1.000;1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, extr 6, mito 6, nucl 3, extr_plas 3,
E.R._mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0000170
HIT000609576 (
ENST00000509727
)
(Adaptin ear-binding coat-associated protein 2 isoform 2.)
genome : 16,782,016 - 16,785,513 (3,498)
query : 1 - 550 (550/550)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000170)
HIX0023168
HIT000022596
(
AK097742
)
Representative transcript
(Conserved hypothetical protein.)
genome : 16,787,443 - 16,794,976 (7,534)
query : 1 - 3,242 (3,242/3,242)
2 exons
identity = 0.994
5'(0.994;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023168)
HIX0023168
HIT000555832 (
ENST00000457898
)
(Conserved hypothetical protein.)
genome : 16,787,443 - 16,794,976 (7,534)
query : 1 - 3,245 (3,245/3,245)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, plas 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023168)
HIX0023708
HIT000045141
(
AK125268
)
Representative transcript
(Hypothetical protein.)
genome : 16,791,051 - 16,793,319 (2,269)
query : 1 - 2,269 (2,269/2,269)
1 exon
identity = 0.992
3'(0.992)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12, extr 8.5, extr_plas 7.5, plas 5.5, pero 2,
nucl 1, mito 1, E.R. 1, lyso 1, E.R._mito 1, mito_nucl 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023708)
HIX0000171
HIT000001637
(
AB067509
)
Representative transcript
(Putative ciliary rootlet coiled-coil protein-like 2 protein; Ciliary rootlet coiled-coil protein pseudogene 3;)
genome : 16,793,931 - 16,819,196 (25,266)
query : 1 - 5,369 (5,369/5,369)
15 exons
identity = 0.997
3'(0.998;1.000;1.000;1.000;0.995;1.000;0.996;
1.000;0.990;0.996;1.000;1.000;1.000;0.992;
0.996)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000171)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : ENSDART00000065238
Macaca
sp. (Macaque) : ENSMMUT00000010223
Oryzias
sp. (Medaka) : ENSORLT00000001328
Pongo
sp. (Orangutan) : ENSPPYT00000002174
Tetraodon
sp. (Tetraodon) : GSTENT00027354001
Rattus
sp. (Rat) : XM_001072349
Bos
sp. (Cow) : XR_028749
HIX0000171
HIT000108923 (
ENST00000263511
)
(Putative ciliary rootlet coiled-coil protein-like 2 protein; Ciliary rootlet coiled-coil protein pseudogene 3;)
genome : 16,793,931 - 16,819,196 (25,266)
query : 1 - 5,368 (5,368/5,368)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000171)
HIX0000171
HIT000562249 (
NR_023386
)
(Putative ciliary rootlet coiled-coil protein-like 2 protein; Ciliary rootlet coiled-coil protein pseudogene 3;)
genome : 16,793,931 - 16,819,196 (25,266)
query : 1 - 5,368 (5,368/5,368)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000171)
HIX0000171
HIT000051097
(
BC033082
)
(Putative ciliary rootlet coiled-coil protein-like 2 protein; Ciliary rootlet coiled-coil protein pseudogene 3;)
genome : 16,795,417 - 16,817,577 (22,161)
query : 1 - 1,695 (1,695/1,736)
12 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.995;1.000;1.000;
0.990;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR026733 : Rootletin
GO :
0035253 : Cellular Component : ciliary rootlet
0051297 : Biological Process : centrosome organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000171)
HIX0029127
HIT000046099
(
AK126226
)
Representative transcript
(Conserved hypothetical protein.)
genome : 16,795,413 - 16,798,558 (3,146)
query : 1 - 3,161 (3,161/3,161)
1 exon
identity = 0.992
5'(0.992)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 14
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029127)
HIX0000171
HIT000703171 (
ENST00000591348
)
(Putative ciliary rootlet coiled-coil protein-like 2 protein; Ciliary rootlet coiled-coil protein pseudogene 3;)
genome : 16,795,417 - 16,817,577 (22,161)
query : 1 - 1,695 (1,695/1,695)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000171)
HIX0029123
HIT000043374
(
AK123501
)
Representative transcript
(Hypothetical protein.)
genome : 16,797,199 - 16,799,278 (2,080)
query : 1 - 2,080 (2,080/2,080)
1 exon
identity = 0.995
3'(0.995)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, nucl 10, cyto_nucl 9, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029123)
HIX0000171
HIT000518754 (
ENST00000420820
)
(Rootletin.)
genome : 16,802,411 - 16,817,802 (15,392)
query : 1 - 1,947 (1,947/1,947)
14 exons
identity = 0.994
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.991;0.994;1.000;1.000;0.926)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12.1667, nucl 10.5, cyto 10.5,
cyto_mito 10.3333, mito 8.5, cyto_pero 6.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000171)
HIX0000171
HIT000703139 (
ENST00000591316
)
(Putative ciliary rootlet coiled-coil protein-like 2 protein; Ciliary rootlet coiled-coil protein pseudogene 3;)
genome : 16,803,425 - 16,809,836 (6,412)
query : 1 - 1,563 (1,563/1,563)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 12.5, cyto_nucl 8.5, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000171)
HIX0000171
HIT000701953 (
ENST00000590118
)
(Rootletin.)
genome : 16,817,129 - 16,825,752 (8,624)
query : 1 - 574 (574/574)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, cyto_nucl 10.5, nucl 8, cyto 7, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000171)
HIX0000171
HIT000701801 (
ENST00000589964
)
(Rootletin.)
genome : 16,817,141 - 16,825,752 (8,612)
query : 1 - 255 (255/255)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000171)
HIX0200125
HIT000091466
(
BC028053
)
Representative transcript
(Hypothetical protein.)
genome : 16,824,733 - 16,825,614 (882)
query : 11 - 892 (882/933)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.989
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10, extr 9, cyto 7, nucl 5, mito_pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200125)
HIX0029233
HIT000093035
(
BC033316
)
Representative transcript
(Hypothetical short protein.)
genome : 16,841,140 - 16,842,249 (1,110)
query : 3 - 1,111 (1,109/1,126)
1 exon
identity = 0.994
5'(0.994)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto_nucl 5.5, cyto 4.5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029233)
HIX0029233
HIT000676055 (
ENST00000562878
)
(Hypothetical short protein.)
genome : 16,841,140 - 16,842,249 (1,110)
query : 1 - 1,110 (1,110/1,110)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, mito 10, extr_plas 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029233)
HIX0159937
HIT000550729 (
ENST00000452795
)
(Hypothetical short protein.)
genome : 16,847,189 - 16,848,291 (1,103)
query : 1 - 327 (327/327)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159937)
HIX0056857
HIT000045610
(
AK125737
)
Representative transcript
(Conserved hypothetical protein.)
genome : 16,860,350 - 16,863,483 (3,134)
query : 2 - 2,515 (2,514/2,515)
2 exons
identity = 0.965
3'(0.939;0.969)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 12.5, extr 11, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056857)
HIX0056857
HIT000094412
(
BC036435
)
(Conserved hypothetical protein.)
genome : 16,860,385 - 16,862,144 (1,760)
query : 6 - 1,550 (1,545/1,564)
2 exons
identity = 0.996
3'(0.997;0.996)5'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 6, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056857)
HIX0056857
HIT000513320 (
ENST00000415386
)
(Conserved hypothetical protein.)
genome : 16,860,381 - 16,862,144 (1,764)
query : 1 - 1,548 (1,548/1,548)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 8, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056857)
HIX0056857
HIT000388932
(
BC126340
)
(Conserved hypothetical protein.)
genome : 16,861,837 - 16,862,667 (831)
query : 1 - 831 (831/831)
1 exon
identity = 0.980
3'(0.980)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 12.5, extr 11, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056857)
HIX0000172
HIT000018069
(
AK093202
)
(Conserved hypothetical protein.)
genome : 16,862,255 - 16,864,669 (2,415)
query : 1 - 1,740 (1,740/1,740)
2 exons
identity = 0.995
5'(0.987;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 15.5, cyto 7, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000172)
HIX0000172
HIT000097958_03
(
BC044863
)
Representative transcript
(Hypothetical protein.)
genome : 16,862,277 - 16,998,601 (136,325)
query : 3 - 2,383 (2,381/2,514)
2 exons
identity = 0.966
5'(0.959;0.982)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 13.6667, extr 7, cyto 6,
cyto_pero 4.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000172)
HIX0214335
HIT000712939 (
ENST00000601199
)
(Conserved hypothetical protein.)
genome : 16,865,561 - 16,866,070 (510)
query : 1 - 510 (510/510)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 8, extr_plas 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214335)
HIX0203718
HIT000536330 (
ENST00000438396
)
(Conserved hypothetical protein.)
genome : 16,875,146 - 16,879,026 (3,881)
query : 1 - 882 (882/882)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, extr 9, nucl 7, cyto_mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203718)
HIX0214042
HIT000689295_01 (
ENST00000577341
)
(Non-protein coding transcript.)
genome : 16,875,409 - 16,875,482 (74)
query : 1 - 74 (74/74)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214042)
HIX0214042
HIT000695986_01 (
ENST00000584111
)
(Non-protein coding transcript.)
genome : 16,875,409 - 16,875,482 (74)
query : 1 - 74 (74/74)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214042)
HIX0213877
HIT000078603
(
AF379612
)
Representative transcript
(Hypothetical protein.)
genome : 16,888,922 - 16,890,082 (1,161)
query : 1 - 1,161 (1,161/1,191)
1 exon
identity = 0.986
3'(0.986)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, nucl 3.5, cyto_nucl 3.5, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213877)
HIX0213877
HIT000078607
(
AF379617
)
(Hypothetical protein.)
genome : 16,888,922 - 16,890,023 (1,102)
query : 1 - 1,102 (1,102/1,122)
1 exon
identity = 0.994
3'(0.994)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22, extr 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213877)
HIX0213877
HIT000078609
(
AF379621
)
(Hypothetical short protein.)
genome : 16,888,922 - 16,889,506 (585)
query : 1 - 585 (585/603)
1 exon
identity = 0.993
3'(0.993)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 15, nucl 6.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213877)
HIX0213877
HIT000078608
(
AF379618
)
(Hypothetical protein.)
genome : 16,888,922 - 16,889,850 (929)
query : 1 - 929 (929/946)
1 exon
identity = 0.994
3'(0.994)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, nucl 3.5, cyto_nucl 3, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213877)
HIX0213877
HIT000078606
(
AF379615
)
(Hypothetical protein.)
genome : 16,888,922 - 16,889,662 (741)
query : 1 - 741 (741/754)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, extr 10, mito_nucl 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213877)
HIX0213877
HIT000078605
(
AF379614
)
(Hypothetical short protein.)
genome : 16,888,922 - 16,889,584 (663)
query : 1 - 663 (663/676)
1 exon
identity = 0.995
3'(0.995)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 15, nucl 6.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213877)
HIX0213877
HIT000483885_04 (
ENST00000401007
)
(Neuroblastoma breakpoint family (NBPF) domain containing protein.)
genome : 16,888,923 - 16,892,211 (3,289)
query : 1 - 1,955 (1,955/1,955)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213877)
HIX0213877
HIT000078602
(
AF379611
)
(Hypothetical protein.)
genome : 16,889,105 - 16,890,082 (978)
query : 1 - 978 (978/999)
1 exon
identity = 0.995
3'(0.995)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, nucl 3.5, cyto_nucl 3, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213877)
HIX0213896
HIT000530883 (
ENST00000432949
)
(Neuroblastoma breakpoint family (NBPF) domain containing protein.)
genome : 16,893,674 - 16,905,862 (12,189)
query : 1 - 1,049 (1,049/1,069)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.981
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14, nucl 13, cyto 13, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213896)
HIX0213896
HIT000517965 (
ENST00000420031
)
(Conserved hypothetical protein.)
genome : 16,893,674 - 16,901,051 (7,378)
query : 1 - 511 (511/531)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.962
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, mito 11, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213896)
HIX0213896
HIT000112930 (
ENST00000287968
)
(Neuroblastoma breakpoint family (NBPF) domain containing protein.)
genome : 16,895,583 - 16,902,975 (7,393)
query : 1 - 694 (694/694)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 14, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213896)
HIX0213896
HIT000330084
(
AF379623
)
Representative transcript
(Neuroblastoma breakpoint family (NBPF) domain containing protein.)
genome : 16,900,982 - 16,903,271 (2,290)
query : 1 - 1,828 (1,828/1,828)
2 exons
identity = 0.992
3'(1.000;0.991)5'
coverage = 1.000
InterPro :
IPR010630 : Neuroblastoma breakpoint family (NBPF) domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 16, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213896)
HIX0000173
HIT000518447 (
ENST00000420513
)
(Hypothetical protein.)
genome : 16,920,057 - 16,935,145 (15,089)
query : 1 - 488 (488/488)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, nucl 12, cyto 9, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000173)
HIX0000173
HIT000334592
(
BC093404
)
Representative transcript
(Conserved hypothetical protein.)
genome : 16,926,097 - 16,940,057 (13,961)
query : 1 - 2,743 (2,743/2,757)
3 exons
identity = 0.996
3'(0.996;1.000;0.996)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto_nucl 8.33333, nucl 8, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000173)
HIX0000173
HIT000710832 (
ENST00000599069
)
(Hypothetical short protein.)
genome : 16,926,084 - 16,940,057 (13,974)
query : 1 - 2,752 (2,752/2,752)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto_nucl 8.33333, nucl 8, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000173)
HIX0023699
HIT000044559
(
AK124686
)
Representative transcript
(Conserved hypothetical protein.)
genome : 16,926,098 - 16,929,544 (3,447)
query : 1 - 3,451 (3,451/3,451)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto 5.5, cyto_nucl 5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023699)
HIX0023699
HIT000711658 (
ENST00000599908
)
(Conserved hypothetical protein.)
genome : 16,926,098 - 16,929,544 (3,447)
query : 1 - 3,447 (3,447/3,447)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto 5.5, cyto_nucl 5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023699)
HIX0116558
HIT000442590
(
DQ576059
)
Representative transcript
(Non-protein coding transcript.)
genome : 16,928,659 - 16,928,689 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0116558)
HIX0000173
HIT000386568
(
BC110431
)
(Conserved hypothetical protein.)
genome : 16,931,904 - 16,940,041 (8,138)
query : 1 - 2,764 (2,764/2,801)
3 exons
identity = 0.995
3'(0.994;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 6.5, cyto_nucl 6.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000173)
HIX0000173
HIT000036373
(
BC013805
)
(Conserved hypothetical protein.)
genome : 16,931,902 - 16,932,925 (1,024)
query : 1 - 1,024 (1,024/1,038)
1 exon
identity = 0.992
3'(0.992)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto_nucl 8.5, nucl 8, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000173)
HIX0000173
HIT000547787 (
ENST00000449853
)
(Hypothetical short protein.)
genome : 16,931,901 - 16,940,029 (8,129)
query : 1 - 2,755 (2,755/2,755)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 6.5, cyto_nucl 6.5, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000173)
HIX0000173
HIT000012509
(
AK055895
)
(Conserved hypothetical protein.)
genome : 16,931,913 - 16,940,050 (8,138)
query : 1 - 2,755 (2,755/2,755)
3 exons
identity = 0.995
3'(0.994;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 6.5, cyto_nucl 6.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000173)
HIX0000173
HIT000043133
(
AK123260
)
(Neuroblastoma breakpoint family member 3 isoform 3.)
genome : 16,931,913 - 16,939,752 (7,840)
query : 1 - 3,021 (3,021/3,021)
3 exons
identity = 0.994
3'(0.995;1.000;0.985)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto_nucl 8.5, extr_plas 8.5, nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000173)
HIX0000173
HIT000262351
(
BC066930
)
(Neuroblastoma breakpoint family member 3 isoform 3.)
genome : 16,932,513 - 16,940,016 (7,504)
query : 2 - 2,135 (2,134/2,152)
3 exons
identity = 0.996
3'(0.995;0.996;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto_nucl 12, extr 8, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000173)
HIX0000173
HIT000034819
(
BC010124
)
(Conserved hypothetical protein.)
genome : 16,932,613 - 16,940,029 (7,417)
query : 1 - 2,033 (2,033/2,054)
3 exons
identity = 0.987
3'(0.985;0.996;0.985)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 6.5, cyto_nucl 6.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000173)
HIX0000173
HIT000265953
(
BC082236
)
(Hypothetical short protein.)
genome : 16,933,142 - 16,940,030 (6,889)
query : 1 - 1,505 (1,505/1,522)
3 exons
identity = 0.984
3'(0.981;0.996;0.985)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 6.5, cyto_nucl 6.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000173)
HIX0199862
HIT000087498
(
BC010508
)
(Rootletin; Ciliary rootlet coiled-coil protein;)
genome : 16,944,748 - 16,952,881 (8,134)
query : 1 - 1,293 (1,293/1,311)
4 exons
identity = 0.996
3'(0.995;1.000;0.996;1.000)5'
coverage = 1.000
InterPro :
IPR026733 : Rootletin
GO :
0035253 : Cellular Component : ciliary rootlet
0051297 : Biological Process : centrosome organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto_nucl 11.5, extr 9, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199862)
HIX0199862
HIT000053230
(
BC047736
)
(Rootletin.)
genome : 16,944,752 - 16,955,147 (10,396)
query : 16 - 1,764 (1,749/1,784)
6 exons
identity = 0.997
3'(0.995;1.000;1.000;0.993;0.993;1.000)5'
coverage = 0.991
InterPro :
IPR026733 : Rootletin
GO :
0035253 : Cellular Component : ciliary rootlet
0051297 : Biological Process : centrosome organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19, cyto 16, nucl 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199862)
HIX0199862
HIT000032747
(
BC006312
)
(Putative ciliary rootlet coiled-coil protein-like 2 protein; Ciliary rootlet coiled-coil protein pseudogene 3;)
genome : 16,944,752 - 16,957,448 (12,697)
query : 1 - 2,017 (2,017/2,034)
7 exons
identity = 0.995
3'(0.995;0.998;0.996;0.980;1.000;0.995;0.984)5'
coverage = 1.000
InterPro :
IPR026733 : Rootletin
GO :
0035253 : Cellular Component : ciliary rootlet
0051297 : Biological Process : centrosome organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17.5, nucl 14.5, cyto 11.5, extr 3, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199862)
HIX0199862
HIT000259514
(
BC056144
)
(Putative ciliary rootlet coiled-coil protein-like 2 protein; Ciliary rootlet coiled-coil protein pseudogene 3;)
genome : 16,944,757 - 16,959,842 (15,086)
query : 18 - 2,762 (2,745/2,779)
7 exons
identity = 0.996
3'(0.995;0.996;1.000;1.000;1.000;0.995;0.984)5'
coverage = 0.994
InterPro :
IPR026733 : Rootletin
GO :
0035253 : Cellular Component : ciliary rootlet
0051297 : Biological Process : centrosome organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 20, cyto 16, nucl 14
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199862)
HIX0199862
HIT000393249
(
DQ786196
)
(Rootletin.)
genome : 16,944,752 - 16,946,661 (1,910)
query : 9 - 1,164 (1,156/1,175)
2 exons
identity = 0.988
3'(0.983;1.000)5'
coverage = 0.993
InterPro :
IPR026733 : Rootletin
GO :
0035253 : Cellular Component : ciliary rootlet
0051297 : Biological Process : centrosome organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 8, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199862)
HIX0199862
HIT000562937 (
NR_026752
)
(Rootletin.)
genome : 16,944,751 - 16,955,147 (10,397)
query : 16 - 1,765 (1,750/1,765)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.992
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 20, cyto 16, nucl 14
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199862)
HIX0199862
HIT000639428 (
ENST00000540383
)
(Rootletin.)
genome : 16,944,751 - 16,955,147 (10,397)
query : 16 - 1,765 (1,750/1,765)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.992
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 20, cyto 16, nucl 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199862)
HIX0199862
HIT000510896 (
ENST00000412962
)
(Putative ciliary rootlet coiled-coil protein-like 2 protein; Ciliary rootlet coiled-coil protein pseudogene 3;)
genome : 16,944,757 - 16,959,843 (15,087)
query : 15 - 2,763 (2,749/2,763)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.995
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 20, cyto 16, nucl 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199862)
HIX0199862
HIT000042944
(
AK123071
)
(PDZ and LIM domain protein 5 isoform i.)
genome : 16,946,910 - 16,951,432 (4,523)
query : 1 - 2,865 (2,865/2,865)
2 exons
identity = 0.991
3'(0.991;0.991)5'
coverage = 1.000
InterPro :
IPR026733 : Rootletin
GO :
0035253 : Cellular Component : ciliary rootlet
0051297 : Biological Process : centrosome organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, cyto_nucl 3, nucl 2.5, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199862)
HIX0199862
HIT000015281
(
AK090414
)
Representative transcript
(Putative ciliary rootlet coiled-coil protein-like 2 protein; Ciliary rootlet coiled-coil protein pseudogene 3;)
genome : 16,947,340 - 16,971,167 (23,828)
query : 1 - 5,935 (5,935/5,935)
11 exons
identity = 0.997
3'(0.997;0.994;0.993;0.993;1.000;0.995;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR026733 : Rootletin
GO :
0035253 : Cellular Component : ciliary rootlet
0051297 : Biological Process : centrosome organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19, cyto 16, nucl 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199862)
Ortholog candidate ( ->
Evola
)
Canis
sp. (Dog) : ENSCAFT00000025161
Macaca
sp. (Macaque) : ENSMMUT00000010223
Monodelphis
sp. (Opossum) : ENSMODT00000036261
Oryzias
sp. (Medaka) : ENSORLT00000001328
Tetraodon
sp. (Tetraodon) : GSTENT00027354001
Takifugu
sp. (Fugu) : SINFRUT00000136893
Rattus
sp. (Rat) : XM_001072349
Bos
sp. (Cow) : XR_028749
HIX0199862
HIT000011351
(
AK054737
)
(Rootletin.)
genome : 16,947,340 - 16,949,639 (2,300)
query : 1 - 2,299 (2,299/2,299)
1 exon
identity = 0.988
3'(0.988)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199862)
HIX0199862
HIT000099276
(
BC051002
)
(Putative ciliary rootlet coiled-coil protein-like 2 protein; Ciliary rootlet coiled-coil protein pseudogene 3;)
genome : 16,955,703 - 16,956,963 (1,261)
query : 5 - 1,267 (1,263/1,287)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199862)
HIX0199862
HIT000088628
(
BC015342
)
(Putative ciliary rootlet coiled-coil protein-like 2 protein; Ciliary rootlet coiled-coil protein pseudogene 3;)
genome : 16,956,032 - 16,956,918 (887)
query : 1 - 887 (887/901)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199862)
HIX0199862
HIT000043210
(
AK123337
)
(Rootletin; Ciliary rootlet coiled-coil protein;)
genome : 16,956,165 - 16,971,178 (15,014)
query : 1 - 2,029 (2,029/2,029)
6 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR026733 : Rootletin
GO :
0035253 : Cellular Component : ciliary rootlet
0051297 : Biological Process : centrosome organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto_nucl 4.16667, nucl 3.5, cyto 3.5,
cyto_pero 3.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199862)
HIX0199862
HIT000315306 (
ENST00000362058
)
(Rootletin; Ciliary rootlet coiled-coil protein;)
genome : 16,956,165 - 16,971,178 (15,014)
query : 1 - 2,029 (2,029/2,029)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto_nucl 4.16667, nucl 3.5, cyto 3.5,
cyto_pero 3.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199862)
HIX0023583
HIT000595452_01 (
ENST00000491943
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 16,971,246 - 16,972,947 (1,702)
query : 1 - 542 (542/542)
2 exons
identity = 0.967
5'(0.978;0.913)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 6, cyto 2, golg 2, cyto_golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000097957
(
BC044862
)
Representative transcript
(Putative macrophage stimulating 1-like protein; Brain rescue factor 1; BRF-1; Hepatocyte growth factor-like protein homolog; Precursor;)
genome : 16,971,254 - 16,976,842 (5,589)
query : 1 - 4,227 (4,227/4,264)
13 exons
identity = 0.982
5'(0.979;0.949;0.976;1.000;0.992;0.984;0.974;
0.975;0.986;0.993;0.991;1.000;0.993)3'
coverage = 1.000
InterPro :
IPR000001 : Kringle
IPR013806 : Kringle-like fold
IPR018056 : Kringle, conserved site
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, nucl 5, cyto 4.5, cyto_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
Ortholog candidate ( ->
Evola
)
Monodelphis
sp. (Opossum) : ENSMODT00000029408
Oryzias
sp. (Medaka) : ENSORLT00000004532
Tetraodon
sp. (Tetraodon) : GSTENT00012478001
Takifugu
sp. (Fugu) : SINFRUT00000147318
HIX0023583
HIT000592002_01 (
ENST00000488350
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 16,971,254 - 16,976,784 (5,531)
query : 1 - 4,152 (4,152/4,152)
13 exons
identity = 0.963
5'(0.956;0.940;0.952;0.992;0.992;0.970;0.973;
0.967;1.000;0.973;0.972;0.986;0.949)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto_nucl 7, cyto 6.5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000547616_02 (
ENST00000449682
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 16,971,694 - 16,976,784 (5,091)
query : 1 - 2,592 (2,592/2,621)
18 exons
identity = 0.964
5'(0.929;0.966;0.940;0.922;0.964;0.992;0.992;
0.988;0.985;0.981;0.985;0.973;0.967;1.000;
0.973;0.972;0.986;0.949)3'
coverage = 0.989
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, pero 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000563545 (
NR_027504
)
(Putative macrophage stimulating 1-like protein; Brain rescue factor 1; BRF-1; Hepatocyte growth factor-like protein homolog; Precursor;)
genome : 16,972,069 - 16,976,915 (4,847)
query : 1 - 2,636 (2,636/2,642)
14 exons
identity = 0.997
5'(1.000;1.000;0.975;0.964;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000128951_01 (
ENST00000334429
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 16,972,069 - 16,976,914 (4,846)
query : 1 - 2,368 (2,368/2,368)
18 exons
identity = 0.994
5'(1.000;0.973;0.983;0.965;1.000;1.000;1.000;
1.000;1.000;1.000;0.985;1.000;0.984;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, cyto 10, cyto_nucl 9.5, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000493081
(
AK298457
)
(Putative macrophage stimulating 1-like protein; Brain rescue factor 1; BRF-1; Hepatocyte growth factor-like protein homolog; Precursor;)
genome : 16,972,097 - 16,974,065 (1,969)
query : 2 - 1,037 (1,036/1,037)
5 exons
identity = 0.991
5'(1.000;1.000;0.983;0.985;0.995)3'
coverage = 0.999
InterPro :
IPR003014 : PAN-1 domain
IPR003609 : Apple-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000588513_01 (
ENST00000484673
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 16,972,098 - 16,974,871 (2,774)
query : 1 - 1,307 (1,307/1,307)
7 exons
identity = 0.967
5'(1.000;0.966;0.932;0.934;0.991;0.992;0.968)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, nucl 1, cyto 1, mito 1, E.R. 1, cyto_nucl 1,
lyso 1, E.R._mito 1, cyto_mito 1, mito_nucl 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000430259
(
AK311393
)
(Putative macrophage stimulating 1-like protein; Brain rescue factor 1; BRF-1; Hepatocyte growth factor-like protein homolog; Precursor;)
genome : 16,972,098 - 16,974,587 (2,490)
query : 1 - 1,368 (1,368/1,368)
5 exons
identity = 0.994
5'(1.000;1.000;0.975;0.964;1.000)3'
coverage = 1.000
InterPro :
IPR003014 : PAN-1 domain
IPR003609 : Apple-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000595858_01 (
ENST00000492370
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 16,972,098 - 16,974,587 (2,490)
query : 1 - 1,374 (1,374/1,374)
5 exons
identity = 0.970
5'(1.000;0.966;0.932;0.934;0.978)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, nucl 1, cyto 1, mito 1, E.R. 1, cyto_nucl 1,
lyso 1, E.R._mito 1, cyto_mito 1, mito_nucl 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000644807_01 (
ENST00000545762
)
(Hepatocyte growth factor-like protein precursor.)
genome : 16,972,098 - 16,974,451 (2,354)
query : 1 - 887 (887/887)
7 exons
identity = 0.971
5'(1.000;0.966;0.932;0.934;0.992;0.992;0.988)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, nucl 1, cyto 1, mito 1, E.R. 1, cyto_nucl 1,
lyso 1, E.R._mito 1, cyto_mito 1, mito_nucl 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000493041
(
AK298417
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 16,972,098 - 16,974,136 (2,039)
query : 1 - 1,024 (1,024/1,024)
6 exons
identity = 0.974
5'(1.000;0.932;0.949;0.939;0.985;0.995)3'
coverage = 1.000
InterPro :
IPR000001 : Kringle
IPR003014 : PAN-1 domain
IPR003609 : Apple-like
IPR013806 : Kringle-like fold
IPR018056 : Kringle, conserved site
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 10, cyto 8, nucl 7, mito 6, cyto_pero 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000365006_02 (
ENST00000383728
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 16,972,100 - 16,975,434 (3,335)
query : 1 - 1,434 (1,434/1,434)
11 exons
identity = 0.970
5'(1.000;0.940;0.922;0.964;0.992;0.992;0.969;
0.981;0.985;0.973;0.966)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000598213_01 (
ENST00000494828
)
(Putative macrophage stimulating 1-like protein; Brain rescue factor 1; BRF-1; Hepatocyte growth factor-like protein homolog; Precursor;)
genome : 16,972,100 - 16,974,018 (1,919)
query : 1 - 621 (621/621)
6 exons
identity = 0.965
5'(1.000;0.940;0.922;0.964;0.992;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 8.5, cyto_nucl 7.33333, mito 5.5,
cyto_mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000487982
(
AK293358
)
(Putative macrophage stimulating 1-like protein; Brain rescue factor 1; BRF-1; Hepatocyte growth factor-like protein homolog; Precursor;)
genome : 16,972,108 - 16,974,871 (2,764)
query : 1 - 1,292 (1,292/1,292)
7 exons
identity = 0.993
5'(0.985;1.000;0.975;0.964;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003014 : PAN-1 domain
IPR003609 : Apple-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000516355_01 (
ENST00000418421
)
(Putative macrophage stimulating 1-like protein; Brain rescue factor 1; BRF-1; Hepatocyte growth factor-like protein homolog; Precursor;)
genome : 16,972,108 - 16,974,871 (2,764)
query : 1 - 1,292 (1,292/1,292)
7 exons
identity = 0.994
5'(1.000;1.000;0.975;0.964;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 4, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000594507_01 (
ENST00000490966
)
(Putative macrophage stimulating 1-like protein; Brain rescue factor 1; BRF-1; Hepatocyte growth factor-like protein homolog; Precursor;)
genome : 16,972,113 - 16,973,792 (1,680)
query : 1 - 829 (829/829)
4 exons
identity = 0.971
5'(1.000;0.966;0.965;0.990)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000555916_01 (
ENST00000457982
)
(Putative macrophage stimulating 1-like protein; Brain rescue factor 1; BRF-1; Hepatocyte growth factor-like protein homolog; Precursor;)
genome : 16,972,117 - 16,976,784 (4,668)
query : 1 - 2,291 (2,291/2,291)
17 exons
identity = 0.985
5'(1.000;1.000;0.983;0.965;1.000;1.000;1.000;
1.000;1.000;0.918;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto_nucl 7.66667, nucl 6, cyto 5, mito 5,
cyto_pero 4.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000588127_01 (
ENST00000484269
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 16,973,298 - 16,976,020 (2,723)
query : 1 - 1,518 (1,518/1,518)
11 exons
identity = 0.976
5'(0.960;0.964;0.992;0.992;0.969;0.981;0.985;
0.973;0.967;1.000;0.973)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 7, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000430419
(
AK311553
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 16,973,894 - 16,975,897 (2,004)
query : 1 - 1,908 (1,908/1,908)
2 exons
identity = 0.983
5'(0.979;0.991)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.8333, nucl 12.5, cyto 10, extr 9,
cyto_pero 6.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000600638_01 (
ENST00000497359
)
(Putative macrophage stimulating 1-like protein; Brain rescue factor 1; BRF-1; Hepatocyte growth factor-like protein homolog; Precursor;)
genome : 16,973,894 - 16,975,897 (2,004)
query : 1 - 1,917 (1,917/1,917)
2 exons
identity = 0.978
5'(0.973;0.986)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 17, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000598196_01 (
ENST00000494809
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 16,973,903 - 16,975,275 (1,373)
query : 1 - 859 (859/859)
5 exons
identity = 0.978
5'(0.989;0.969;0.981;0.985;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000045104
(
AK125231
)
(Putative macrophage stimulating 1-like protein; Brain rescue factor 1; BRF-1; Hepatocyte growth factor-like protein homolog; Precursor;)
genome : 16,973,908 - 16,976,841 (2,934)
query : 1 - 2,336 (2,336/2,336)
6 exons
identity = 0.985
5'(0.994;0.978;0.986;0.991;1.000;0.985)3'
coverage = 1.000
InterPro :
IPR000001 : Kringle
IPR013806 : Kringle-like fold
IPR018056 : Kringle, conserved site
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto_nucl 5.83333, nucl 5.5, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000583196_01 (
ENST00000479115
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 16,973,908 - 16,976,784 (2,877)
query : 1 - 2,285 (2,285/2,285)
6 exons
identity = 0.975
5'(0.988;0.970;0.983;0.972;0.986;0.949)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, nucl 5.5, cyto_nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000592624_01 (
ENST00000489007
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 16,973,957 - 16,975,011 (1,055)
query : 1 - 737 (737/737)
3 exons
identity = 0.980
5'(0.992;0.988;0.973)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 5.5, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000584293_01 (
ENST00000480268
)
(Plasminogen; EC=3.4.21.7; Contains: Plasmin heavy chain A; Contains: Activation peptide; Contains: Plasmin heavy chain A, short form; Contains: Plasmin light chain B; Precursor;)
genome : 16,974,485 - 16,975,351 (867)
query : 1 - 648 (648/648)
3 exons
identity = 0.977
5'(0.971;0.985;0.990)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000573393_01 (
ENST00000468847
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 16,974,568 - 16,975,073 (506)
query : 1 - 406 (406/406)
2 exons
identity = 0.975
5'(0.984;0.971)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 12.5, extr 9, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000601265_01 (
ENST00000498021
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 16,974,882 - 16,975,914 (1,033)
query : 1 - 854 (854/854)
3 exons
identity = 0.980
5'(0.971;0.973;0.985)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 6.5, cyto_nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0023583
HIT000588007_01 (
ENST00000484144
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 16,975,460 - 16,976,433 (974)
query : 1 - 878 (878/878)
2 exons
identity = 0.983
5'(0.983;0.984)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto 9, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023583)
HIX0161536
HIT000555030_01 (
ENST00000457096
)
(Hypothetical protein.)
genome : 16,982,999 - 16,983,730 (732)
query : 1 - 498 (498/498)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161536)
HIX0159718
HIT000532270_01 (
ENST00000434336
)
(Hypothetical protein.)
genome : 16,999,498 - 17,000,007 (510)
query : 1 - 510 (510/510)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 7, nucl 6.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159718)
HIX0159718
HIT000711925_01 (
ENST00000600179
)
(Hypothetical protein.)
genome : 16,999,498 - 17,000,007 (510)
query : 1 - 510 (510/510)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 7, nucl 6.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159718)
HIX0214043
HIT000689295_02 (
ENST00000577341
)
(Non-protein coding transcript.)
genome : 17,007,750 - 17,007,823 (74)
query : 1 - 74 (74/74)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214043)
HIX0214043
HIT000695986_02 (
ENST00000584111
)
(Non-protein coding transcript.)
genome : 17,007,750 - 17,007,823 (74)
query : 1 - 74 (74/74)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214043)
HIX0028844
HIT000517201 (
ENST00000419267
)
(Translation initiation factor 1A (eIF-1A) family protein.)
genome : 17,012,116 - 17,012,550 (435)
query : 1 - 435 (435/435)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13, cyto 11.5, nucl 9.5, mito 6, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028844)
HIX0028654
HIT000512762 (
ENST00000414828
)
(Non-protein coding transcript.)
genome : 17,013,834 - 17,018,804 (4,971)
query : 1 - 571 (571/571)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028654)
HIX0028654
HIT000110607 (
ENST00000270691
)
(Espin; Autosomal recessive deafness type 36 protein; Ectoplasmic specialization protein;)
genome : 17,017,713 - 17,046,652 (28,940)
query : 1 - 2,015 (2,015/2,015)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028654)
HIX0028654
HIT000250040
(
AL035288
)
Representative transcript
(Espin; Autosomal recessive deafness type 36 protein; Ectoplasmic specialization protein;)
genome : 17,017,713 - 17,046,652 (28,940)
query : 1 - 2,015 (2,015/2,015)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002110 : Ankyrin repeat
IPR003124 : WH2 domain
IPR020683 : Ankyrin repeat-containing domain
GO :
0003779 : Molecular Function : actin binding
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028654)
Ortholog candidate ( ->
Evola
)
Equus
sp. (Horse) : ENSECAT00000022074
Monodelphis
sp. (Opossum) : ENSMODT00000007762
Tetraodon
sp. (Tetraodon) : GSTENT00022538001
Danio
sp. (Zebrafish) : NM_001123282
Rattus
sp. (Rat) : U46007
Pan
sp. (Chimpanzee) : XR_025583
HIX0028654
HIT000562815 (
NR_026567
)
(Espin; Autosomal recessive deafness type 36 protein; Ectoplasmic specialization protein;)
genome : 17,017,713 - 17,046,652 (28,940)
query : 1 - 2,015 (2,015/2,015)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto 12
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028654)
HIX0028654
HIT000596033 (
ENST00000492551
)
(Espin; Autosomal recessive deafness type 36 protein; Ectoplasmic specialization protein;)
genome : 17,017,713 - 17,046,652 (28,940)
query : 1 - 2,015 (2,015/2,015)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028654)
HIX0029283
HIT000095376
(
BC038781
)
Representative transcript
(Non-protein coding transcript.)
genome : 17,028,041 - 17,032,089 (4,049)
query : 1 - 406 (406/421)
3 exons
identity = 0.995
5'(0.993;1.000;0.993)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029283)
HIX0028654
HIT000488871
(
AK294247
)
(Espin; Autosomal recessive deafness type 36 protein; Ectoplasmic specialization protein;)
genome : 17,033,419 - 17,037,114 (3,696)
query : 1 - 1,171 (1,171/1,171)
3 exons
identity = 0.999
3'(0.999;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 12.3333, extr 10, cyto 9,
cyto_pero 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028654)
HIX0028654
HIT000634756 (
ENST00000535711
)
(Espin; Autosomal recessive deafness type 36 protein; Ectoplasmic specialization protein;)
genome : 17,033,419 - 17,037,114 (3,696)
query : 1 - 1,171 (1,171/1,171)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 12.3333, extr 10, cyto 9,
cyto_pero 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028654)
HIX0159719
HIT000532270_02 (
ENST00000434336
)
(Hypothetical protein.)
genome : 17,060,447 - 17,060,956 (510)
query : 1 - 510 (510/510)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 7, nucl 6.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159719)
HIX0159719
HIT000711925_02 (
ENST00000600179
)
(Hypothetical protein.)
genome : 17,060,447 - 17,060,956 (510)
query : 1 - 510 (510/510)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 7, nucl 6.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159719)
HIX0159905
HIT000097958_04
(
BC044863
)
Representative transcript
(Hypothetical protein.)
genome : 17,061,853 - 17,198,646 (136,794)
query : 3 - 2,383 (2,381/2,514)
2 exons
identity = 0.966
3'(0.982;0.961)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 13.6667, extr 7, cyto 6,
cyto_pero 4.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159905)
HIX0000176
HIT000010184
(
AK026910
)
(Putative ciliary rootlet coiled-coil protein-like 2 protein; Ciliary rootlet coiled-coil protein pseudogene 3;)
genome : 17,066,768 - 17,270,033 (203,266)
query : 1 - 1,861 (1,861/1,883)
10 exons
identity = 0.995
5'(0.984;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.989;0.984)3'
coverage = 1.000
InterPro :
IPR026733 : Rootletin
GO :
0035253 : Cellular Component : ciliary rootlet
0051297 : Biological Process : centrosome organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, mito 10, cyto_nucl 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000176)
HIX0000176
HIT000570915 (
ENST00000466256
)
(Putative ciliary rootlet coiled-coil protein-like 2 protein; Ciliary rootlet coiled-coil protein pseudogene 3;)
genome : 17,066,768 - 17,267,920 (201,153)
query : 1 - 1,859 (1,859/1,868)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, mito 10, cyto_nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000176)
HIX0023841
HIT000050101
(
AK130830
)
Representative transcript
(Conserved hypothetical protein.)
genome : 17,072,991 - 17,074,788 (1,798)
query : 1 - 1,796 (1,796/1,796)
1 exon
identity = 0.989
3'(0.989)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023841)
HIX0161537
HIT000555030_02 (
ENST00000457096
)
(Hypothetical protein.)
genome : 17,076,728 - 17,077,459 (732)
query : 1 - 498 (498/498)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161537)
HIX0028912
HIT000725022 (
NM_001271733
)
(Putative macrophage stimulating 1-like protein; Brain rescue factor 1; BRF-1; Hepatocyte growth factor-like protein homolog; Precursor;)
genome : 17,081,129 - 17,090,975 (9,847)
query : 1 - 4,668 (4,668/4,668)
14 exons
identity = 0.994
3'(1.000;1.000;1.000;1.000;1.000;0.918;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 4.5, mito 4, cyto_nucl 3.5,
mito_pero 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028912)
HIX0028912
HIT000396094 (
ENST00000389184
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 17,081,405 - 17,087,579 (6,175)
query : 1 - 4,377 (4,377/4,377)
17 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.973;
0.985;1.000;1.000;0.988;1.000;1.000;1.000;
1.000;0.966;0.962)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 13.8333, cyto 5, cyto_pero 3.5,
extr 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028912)
HIX0028912
HIT000218906
(
U28055
)
(Putative macrophage stimulating 1-like protein; Brain rescue factor 1; BRF-1; Hepatocyte growth factor-like protein homolog; Precursor;)
genome : 17,081,405 - 17,085,367 (3,963)
query : 1 - 3,183 (3,183/3,183)
8 exons
identity = 0.997
3'(0.996;1.000;1.000;1.000;1.000;1.000;0.973;
1.000)5'
coverage = 1.000
InterPro :
IPR000001 : Kringle
IPR001254 : Peptidase S1
IPR001314 : Peptidase S1A, chymotrypsin-type
IPR009003 : Trypsin-like cysteine/serine peptidase domain
GO :
0003824 : Molecular Function : catalytic activity
0004252 : Molecular Function : serine-type endopeptidase activity
0006508 : Biological Process : proteolysis
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 7.5, cyto_nucl 7, nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028912)
HIX0028912
HIT000553339 (
ENST00000455405
)
(Putative macrophage stimulating 1-like protein; Brain rescue factor 1; BRF-1; Hepatocyte growth factor-like protein homolog; Precursor;)
genome : 17,081,405 - 17,085,367 (3,963)
query : 1 - 3,184 (3,184/3,184)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 6.5, nucl 4, cyto_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028912)
HIX0028912
HIT000331721
(
AY192149
)
Representative transcript
(Putative macrophage stimulating 1-like protein; Brain rescue factor 1; BRF-1; Hepatocyte growth factor-like protein homolog; Precursor;)
genome : 17,081,603 - 17,090,975 (9,373)
query : 1 - 4,130 (4,130/4,132)
15 exons
identity = 0.987
3'(0.938;0.993;1.000;1.000;1.000;1.000;0.918;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR000001 : Kringle
IPR001254 : Peptidase S1
IPR003014 : PAN-1 domain
IPR003609 : Apple-like
IPR009003 : Trypsin-like cysteine/serine peptidase domain
IPR013806 : Kringle-like fold
IPR018056 : Kringle, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0004252 : Molecular Function : serine-type endopeptidase activity
0006508 : Biological Process : proteolysis
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 4.5, mito 4, cyto_nucl 3.5,
mito_pero 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028912)
Ortholog candidate ( ->
Evola
)
Tetraodon
sp. (Tetraodon) : CR718243
Monodelphis
sp. (Opossum) : ENSMODT00000029408
HIX0029020
HIT000069983
(
AF116647
)
Representative transcript
(Conserved hypothetical protein.)
genome : 17,082,619 - 17,083,758 (1,140)
query : 2 - 1,141 (1,140/1,141)
1 exon
identity = 0.995
5'(0.995)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 10, mito 5, cyto_pero 5, cyto_plas 5,
cyto_golg 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029020)
HIX0028912
HIT000426773
(
AK307907
)
(Putative macrophage stimulating 1-like protein; Brain rescue factor 1; BRF-1; Hepatocyte growth factor-like protein homolog; Precursor;)
genome : 17,083,616 - 17,086,516 (2,901)
query : 1 - 1,921 (1,921/1,921)
9 exons
identity = 0.987
3'(0.982;1.000;1.000;0.993;0.974;0.983;1.000;
0.986;0.977)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 11.5, cyto_nucl 11, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028912)
HIX0028912
HIT000595817_01 (
ENST00000492329
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 17,083,673 - 17,086,660 (2,988)
query : 1 - 2,006 (2,006/2,006)
9 exons
identity = 0.973
3'(0.944;0.979;0.991;0.980;0.974;0.983;0.973;
0.971;0.986)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 9, cyto_nucl 8.83333, cyto_pero 6,
nucl 5.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028912)
HIX0028912
HIT000583196_02 (
ENST00000479115
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 17,083,673 - 17,086,552 (2,880)
query : 1 - 2,285 (2,285/2,285)
6 exons
identity = 0.975
3'(0.944;0.979;0.991;0.982;0.971;0.988)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, nucl 5.5, cyto_nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028912)
HIX0028912
HIT000540486_01 (
ENST00000442552
)
(Putative macrophage stimulating 1-like protein; Brain rescue factor 1; BRF-1; Hepatocyte growth factor-like protein homolog; Precursor;)
genome : 17,083,727 - 17,090,975 (7,249)
query : 1 - 2,185 (2,185/2,185)
16 exons
identity = 0.986
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.918;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 7.5, cyto_pero 5.5, mito 5, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028912)
HIX0028912
HIT000597258_01 (
ENST00000493836
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 17,083,748 - 17,085,098 (1,351)
query : 1 - 923 (923/923)
5 exons
identity = 0.980
3'(0.965;0.979;0.991;0.980;0.985)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 8.5, extr_plas 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028912)
HIX0028912
HIT000676922_01 (
ENST00000563780
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 17,084,179 - 17,084,682 (504)
query : 1 - 423 (423/423)
2 exons
identity = 0.976
3'(0.977;0.976)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 8.5, cyto_nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028912)
HIX0028912
HIT000585884_01 (
ENST00000481930
)
(Hypothetical protein.)
genome : 17,084,437 - 17,085,486 (1,050)
query : 1 - 565 (565/565)
4 exons
identity = 0.979
3'(0.982;0.983;0.973;0.974)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11, cyto 9.5, cyto_mito 8.5, nucl 8, extr 7,
cyto_pero 6.66667, mito 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028912)
HIX0028912
HIT000601265_02 (
ENST00000498021
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 17,084,543 - 17,085,575 (1,033)
query : 1 - 854 (854/854)
3 exons
identity = 0.980
3'(0.983;0.973;0.975)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 6.5, cyto_nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028912)
HIX0028912
HIT000643200_01 (
ENST00000544155
)
(Putative macrophage stimulating 1-like protein; Brain rescue factor 1; BRF-1; Hepatocyte growth factor-like protein homolog; Precursor;)
genome : 17,084,548 - 17,085,207 (660)
query : 21 - 592 (572/592)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.966
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_nucl 8, cyto 7.5, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028912)
HIX0028912
HIT000600638_02 (
ENST00000497359
)
(Putative macrophage stimulating 1-like protein; Brain rescue factor 1; BRF-1; Hepatocyte growth factor-like protein homolog; Precursor;)
genome : 17,084,560 - 17,086,566 (2,007)
query : 1 - 1,917 (1,917/1,917)
2 exons
identity = 0.978
3'(0.983;0.975)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 17, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028912)
HIX0028912
HIT000585039_01 (
ENST00000481055
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 17,086,740 - 17,087,769 (1,030)
query : 1 - 597 (597/597)
4 exons
identity = 0.962
3'(1.000;0.956;0.906;0.981)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, extr 11, cyto_nucl 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028912)
HIX0028912
HIT000644205 (
ENST00000545160
)
(Hepatocyte growth factor-like protein; Macrophage stimulatory protein; Macrophage-stimulating protein; MSP; Contains: Hepatocyte growth factor-like protein alpha chain; Contains: Hepatocyte growth factor-like protein beta chain; Precursor;)
genome : 17,087,332 - 17,096,732 (9,401)
query : 1 - 559 (559/559)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028912)
HIX0093884
HIT000393261
(
DQ786208
)
Representative transcript
(Hypothetical short protein.)
genome : 17,091,800 - 17,092,236 (437)
query : 12 - 447 (436/470)
1 exon
identity = 0.993
3'(0.993)5'
coverage = 0.975
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 12, nucl 9.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0093884)
HIX0159790
HIT000512274 (
ENST00000414340
)
(Hypothetical short protein.)
genome : 17,177,752 - 17,179,294 (1,543)
query : 1 - 554 (554/554)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_nucl 5, nucl 4.5, cyto 4.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159790)
HIX0159790
HIT000520279 (
ENST00000422345
)
(Hypothetical short protein.)
genome : 17,177,816 - 17,179,624 (1,809)
query : 1 - 735 (735/735)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_nucl 5, nucl 4.5, cyto 4.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159790)
HIX0160297
HIT000512062 (
ENST00000414128
)
(Conserved hypothetical protein.)
genome : 17,181,902 - 17,185,779 (3,878)
query : 1 - 882 (882/882)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, extr 9, nucl 7, cyto_mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160297)
HIX0203907
HIT000659806 (
NR_037446
)
(Non-protein coding transcript.)
genome : 17,185,444 - 17,185,516 (73)
query : 1 - 73 (73/73)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203907)
HIX0203907
HIT000695541 (
ENST00000583661
)
(Non-protein coding transcript.)
genome : 17,185,444 - 17,185,516 (73)
query : 1 - 73 (73/73)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203907)
HIX0159905
HIT000535936 (
ENST00000438002
)
(Conserved hypothetical protein.)
genome : 17,197,440 - 17,200,574 (3,135)
query : 1 - 2,520 (2,520/2,520)
2 exons
identity = 0.998
3'(1.000;0.986)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 15, cyto 7, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159905)
HIX0213996
HIT000549762 (
ENST00000451828
)
(Conserved hypothetical protein.)
genome : 17,198,753 - 17,200,536 (1,784)
query : 1 - 434 (434/434)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 15.5, extr 6, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213996)
HIX0159905
HIT000551488 (
ENST00000453554
)
(Conserved hypothetical protein.)
genome : 17,198,779 - 17,200,539 (1,761)
query : 1 - 1,546 (1,546/1,546)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 13.8333, extr 7, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159905)
HIX0213996
HIT000555790 (
ENST00000457856
)
(Hypothetical short protein.)
genome : 17,199,534 - 17,200,587 (1,054)
query : 1 - 475 (475/475)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, mito 4, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213996)
HIX0159801
HIT000264318
(
BC070363
)
Representative transcript
(Hypothetical short protein.)
genome : 17,215,041 - 17,216,161 (1,121)
query : 1 - 359 (359/389)
2 exons
identity = 0.997
3'(1.000;0.992)5'
coverage = 0.992
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159801)
HIX0159801
HIT000520058 (
ENST00000422124
)
(Conserved hypothetical protein.)
genome : 17,215,033 - 17,215,868 (836)
query : 1 - 406 (406/406)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 15.5, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159801)
HIX0159801
HIT000555009 (
ENST00000457075
)
(Hypothetical short protein.)
genome : 17,215,037 - 17,216,144 (1,108)
query : 1 - 346 (346/346)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159801)
HIX0159801
HIT000514803 (
ENST00000416869
)
(Hypothetical short protein.)
genome : 17,215,037 - 17,216,137 (1,101)
query : 1 - 336 (336/336)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159801)
HIX0203723
HIT000551851 (
ENST00000453917
)
(Conserved hypothetical protein.)
genome : 17,215,590 - 17,216,097 (508)
query : 1 - 508 (508/508)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, cyto 14, nucl 11, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203723)
HIX0028960
HIT000242488
(
AB175892
)
Representative transcript
(Hypothetical short protein.)
genome : 17,232,419 - 17,232,780 (362)
query : 2 - 357 (356/368)
1 exon
identity = 0.981
3'(0.981)5'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028960)
HIX0000176
HIT000204991 (
NM_014675
)
(Rootletin; Ciliary rootlet coiled-coil protein;)
genome : 17,248,445 - 17,299,474 (51,030)
query : 1 - 6,656 (6,656/6,656)
37 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 17, cyto 8.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000176)
HIX0000176
HIT000356821 (
ENST00000375541
)
(Rootletin; Ciliary rootlet coiled-coil protein;)
genome : 17,248,445 - 17,299,474 (51,030)
query : 1 - 6,656 (6,656/6,656)
37 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 17, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000176)
HIX0000176
HIT000543479 (
ENST00000445545
)
(Rootletin.)
genome : 17,249,250 - 17,287,573 (38,324)
query : 1 - 3,931 (3,931/3,931)
24 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000176)
HIX0000176
HIT000572529 (
ENST00000467938
)
(Putative ciliary rootlet coiled-coil protein-like 2 protein; Ciliary rootlet coiled-coil protein pseudogene 3;)
genome : 17,249,262 - 17,280,857 (31,596)
query : 1 - 2,515 (2,515/2,515)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto_nucl 15, cyto 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000176)
HIX0000176
HIT000000162
(
AB007914
)
Representative transcript
(Rootletin.)
genome : 17,250,916 - 17,299,460 (48,545)
query : 1 - 6,281 (6,281/6,281)
35 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.997;1.000;1.000;1.000;
1.000;0.996;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16.5, cyto 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000176)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AF527975
Canis
sp. (Dog) : ENSCAFT00000025161
Danio
sp. (Zebrafish) : ENSDART00000065238
Macaca
sp. (Macaque) : ENSMMUT00000010223
Oryzias
sp. (Medaka) : ENSORLT00000001328
Pongo
sp. (Orangutan) : ENSPPYT00000002171
Takifugu
sp. (Fugu) : SINFRUT00000136893
Rattus
sp. (Rat) : XM_001072349
Equus
sp. (Horse) : XM_001914791
Pan
sp. (Chimpanzee) : XM_513109
Bos
sp. (Cow) : XR_028749
HIX0000176
HIT000389094
(
BC126911
)
(Putative ciliary rootlet coiled-coil protein-like 2 protein; Ciliary rootlet coiled-coil protein pseudogene 3;)
genome : 17,256,400 - 17,299,128 (42,729)
query : 1 - 5,450 (5,450/5,458)
28 exons
identity = 0.997
5'(0.992;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.990;1.000;1.000;0.977;1.000;0.996)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto 11, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000176)
HIX0000176
HIT000389095
(
BC126912
)
(Putative ciliary rootlet coiled-coil protein-like 2 protein; Ciliary rootlet coiled-coil protein pseudogene 3;)
genome : 17,256,400 - 17,299,128 (42,729)
query : 1 - 5,450 (5,450/5,458)
28 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.990;1.000;1.000;0.977;1.000;0.996)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto 8, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000176)
HIX0000176
HIT000596110 (
ENST00000492631
)
(Rootletin.)
genome : 17,256,630 - 17,272,900 (16,271)
query : 1 - 1,373 (1,373/1,373)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.991)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 15.5, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000176)
HIX0000176
HIT000572317 (
ENST00000467715
)
(Rootletin.)
genome : 17,263,286 - 17,266,588 (3,303)
query : 1 - 614 (614/614)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto 13, cyto_nucl 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000176)
HIX0000176
HIT000597598 (
ENST00000494191
)
(Putative ciliary rootlet coiled-coil protein-like 2 protein; Ciliary rootlet coiled-coil protein pseudogene 3;)
genome : 17,265,404 - 17,280,852 (15,449)
query : 1 - 1,996 (1,996/1,996)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17, cyto 14.5, nucl 12.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000176)
HIX0000176
HIT000341932
(
DQ139275
)
(Rootletin.)
genome : 17,266,534 - 17,299,402 (32,869)
query : 1 - 5,920 (5,920/5,920)
24 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.997;
1.000;1.000;1.000;1.000;0.996;1.000;1.000;
1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR026733 : Rootletin
GO :
0035253 : Cellular Component : ciliary rootlet
0051297 : Biological Process : centrosome organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000176)
HIX0000176
HIT000590079 (
ENST00000486318
)
(Rootletin.)
genome : 17,270,620 - 17,278,450 (7,831)
query : 1 - 724 (724/724)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto_nucl 8, nucl 7.5, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000176)
HIX0000176
HIT000601897 (
ENST00000498688
)
(Rootletin.)
genome : 17,273,362 - 17,279,710 (6,349)
query : 1 - 583 (583/583)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13, cyto 12, nucl 10, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000176)
HIX0000176
HIT000581906 (
ENST00000477773
)
(Rootletin.)
genome : 17,274,886 - 17,277,833 (2,948)
query : 1 - 648 (648/648)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, nucl 5, extr 3, mito_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000176)
HIX0000176
HIT000600917 (
ENST00000497654
)
(Rootletin.)
genome : 17,279,652 - 17,281,276 (1,625)
query : 1 - 508 (508/508)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, nucl 11, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000176)
HIX0000176
HIT000569734 (
ENST00000465021
)
(Rootletin.)
genome : 17,292,523 - 17,297,237 (4,715)
query : 1 - 780 (780/780)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000176)
HIX0000176
HIT000243680
(
AF527734
)
(Rootletin.)
genome : 17,292,918 - 17,299,454 (6,537)
query : 1 - 1,835 (1,835/1,852)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.995;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR026733 : Rootletin
GO :
0035253 : Cellular Component : ciliary rootlet
0051297 : Biological Process : centrosome organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 16, cyto 11.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000176)
HIX0000176
HIT000569995 (
ENST00000465291
)
(Rootletin.)
genome : 17,296,280 - 17,297,462 (1,183)
query : 1 - 683 (683/683)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto_nucl 9.5, nucl 8.5, extr_plas 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000176)
HIX0000177
HIT000206415 (
NM_017459
)
(Microfibrillar-associated protein 2; MFAP-2; Microfibril-associated glycoprotein 1; MAGP; MAGP-1; Precursor;)
genome : 17,301,000 - 17,308,081 (7,082)
query : 1 - 1,081 (1,081/1,105)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000177)
HIX0000177
HIT000560098 (
NM_001135247
)
(Microfibrillar-associated protein 2; MFAP-2; Microfibril-associated glycoprotein 1; MAGP; MAGP-1; Precursor;)
genome : 17,301,000 - 17,308,081 (7,082)
query : 1 - 1,078 (1,078/1,102)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000177)
HIX0000177
HIT000199299 (
NM_002403
)
(Microfibrillar-associated protein 2; MFAP-2; Microfibril-associated glycoprotein 1; MAGP; MAGP-1; Precursor;)
genome : 17,301,000 - 17,307,173 (6,174)
query : 1 - 1,100 (1,100/1,124)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000177)
HIX0000177
HIT000560099 (
NM_001135248
)
(Microfibrillar-associated protein 2; MFAP-2; Microfibril-associated glycoprotein 1; MAGP; MAGP-1; Precursor;)
genome : 17,301,000 - 17,307,173 (6,174)
query : 1 - 1,097 (1,097/1,121)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000177)
HIX0000177
HIT000091457
(
BC028033
)
(Microfibrillar-associated protein 5; MFAP-5; MP25; Microfibril-associated glycoprotein 2; MAGP-2; Precursor;)
genome : 17,301,000 - 17,307,116 (6,117)
query : 1 - 2,368 (2,368/2,392)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003582 : ShKT domain
IPR008673 : Microfibril-associated glycoprotein
GO :
0001527 : Cellular Component : microfibril
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 6, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000177)
HIX0000177
HIT000330531
(
AK222751
)
(Microfibrillar-associated protein 2; MFAP-2; Microfibril-associated glycoprotein 1; MAGP; MAGP-1; Precursor;)
genome : 17,300,995 - 17,307,135 (6,141)
query : 1 - 1,064 (1,064/1,081)
9 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003582 : ShKT domain
IPR008673 : Microfibril-associated glycoprotein
GO :
0001527 : Cellular Component : microfibril
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000177)
HIX0000177
HIT000036977
(
BC015039
)
Representative transcript
(Microfibrillar-associated protein 2; MFAP-2; Microfibril-associated glycoprotein 1; MAGP; MAGP-1; Precursor;)
genome : 17,301,000 - 17,307,173 (6,174)
query : 1 - 1,100 (1,100/1,114)
9 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
0.987;1.000)5'
coverage = 1.000
InterPro :
IPR003582 : ShKT domain
IPR008673 : Microfibril-associated glycoprotein
GO :
0001527 : Cellular Component : microfibril
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000177)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK160213
Danio
sp. (Zebrafish) : BC124467
Tetraodon
sp. (Tetraodon) : CR728451
Pongo
sp. (Orangutan) : ENSPPYT00000002170
Bos
sp. (Cow) : S68064
Rattus
sp. (Rat) : XM_001072310
Macaca
sp. (Macaque) : XM_001099579
Pan
sp. (Chimpanzee) : XM_001154988
Equus
sp. (Horse) : XM_001914677
Canis
sp. (Dog) : XM_544541
HIX0000177
HIT000218522
(
U19718
)
(Microfibrillar-associated protein 2; MFAP-2; Microfibril-associated glycoprotein 1; MAGP; MAGP-1; Precursor;)
genome : 17,300,997 - 17,304,809 (3,813)
query : 1 - 1,007 (1,007/1,008)
8 exons
identity = 0.991
3'(0.985;1.000;1.000;1.000;1.000;1.000;0.989;
1.000)5'
coverage = 0.999
InterPro :
IPR003582 : ShKT domain
IPR008673 : Microfibril-associated glycoprotein
GO :
0001527 : Cellular Component : microfibril
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000177)
HIX0000177
HIT000356815 (
ENST00000375535
)
(Microfibrillar-associated protein 2; MFAP-2; Microfibril-associated glycoprotein 1; MAGP; MAGP-1; Precursor;)
genome : 17,300,997 - 17,307,330 (6,334)
query : 1 - 1,260 (1,260/1,260)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000177)
HIX0000177
HIT000593650 (
ENST00000490075
)
(Microfibrillar-associated protein 2; MFAP-2; Microfibril-associated glycoprotein 1; MAGP; MAGP-1; Precursor;)
genome : 17,300,997 - 17,307,116 (6,120)
query : 1 - 2,371 (2,371/2,371)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 6, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000177)
HIX0000177
HIT000356814 (
ENST00000375534
)
(Microfibrillar-associated protein 2; MFAP-2; Microfibril-associated glycoprotein 1; MAGP; MAGP-1; Precursor;)
genome : 17,300,997 - 17,304,771 (3,775)
query : 1 - 970 (970/970)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000177)
HIX0000177
HIT000536476 (
ENST00000438542
)
(Microfibrillar-associated protein 2; MFAP-2; Microfibril-associated glycoprotein 1; MAGP; MAGP-1; Precursor;)
genome : 17,301,003 - 17,307,173 (6,171)
query : 1 - 1,094 (1,094/1,094)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000177)
HIX0000177
HIT000531831_01 (
ENST00000433897
)
(Microfibrillar-associated protein 2; MFAP-2; Microfibril-associated glycoprotein 1; MAGP; MAGP-1; Precursor;)
genome : 17,301,415 - 17,301,519 (105)
query : 1 - 105 (105/105)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000177)
HIX0000177
HIT000267175
(
CR407678
)
(Microfibrillar-associated protein 2; MFAP-2; Microfibril-associated glycoprotein 1; MAGP; MAGP-1; Precursor;)
genome : 17,301,418 - 17,304,768 (3,351)
query : 1 - 549 (549/549)
8 exons
identity = 0.998
3'(1.000;0.986;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR003582 : ShKT domain
IPR008673 : Microfibril-associated glycoprotein
GO :
0001527 : Cellular Component : microfibril
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000177)
HIX0000177
HIT000580966 (
ENST00000476788
)
(Microfibrillar-associated protein 2; MFAP-2; Microfibril-associated glycoprotein 1; MAGP; MAGP-1; Precursor;)
genome : 17,302,157 - 17,307,127 (4,971)
query : 1 - 544 (544/544)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000177)
HIX0000177
HIT000496279
(
AK301655
)
(Conserved hypothetical protein.)
genome : 17,302,191 - 17,308,073 (5,883)
query : 1 - 1,299 (1,299/1,299)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto_nucl 5.33333, cyto 5, cyto_pero 3.5,
nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000177)
HIX0000177
HIT000582780 (
ENST00000478684
)
(Microfibrillar-associated protein 2; MFAP-2; Microfibril-associated glycoprotein 1; MAGP; MAGP-1; Precursor;)
genome : 17,302,666 - 17,304,809 (2,144)
query : 1 - 657 (657/657)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000177)
HIX0000177
HIT000596078 (
ENST00000492598
)
(Microfibrillar-associated protein 2 isoform b precursor.)
genome : 17,302,744 - 17,304,809 (2,066)
query : 1 - 681 (681/681)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 26, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000177)
HIX0161229
HIT000544195 (
ENST00000446261
)
(Conserved hypothetical protein.)
genome : 17,305,421 - 17,331,586 (26,166)
query : 1 - 636 (636/636)
2 exons
identity = 0.994
5'(1.000;0.991)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161229)
HIX0000178
HIT000028839
(
AL833966
)
Representative transcript
(P-type ATPase family protein.)
genome : 17,312,454 - 17,318,355 (5,902)
query : 13 - 1,865 (1,853/1,884)
9 exons
identity = 0.998
3'(0.995;0.998;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.993
InterPro :
IPR001757 : P-type ATPase
IPR023214 : HAD-like domain
GO :
0006812 : Biological Process : cation transport
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 2, extr 1, mito 1, lyso 1, golg 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000178)
HIX0000178
HIT000009202
(
AK025928
)
(P-type ATPase family protein.)
genome : 17,312,455 - 17,316,656 (4,202)
query : 1 - 1,427 (1,427/1,446)
9 exons
identity = 0.998
3'(0.997;1.000;0.993;1.000;0.990;1.000;1.000;
1.000;1.000)5'
coverage = 0.999
InterPro :
IPR001757 : P-type ATPase
IPR023214 : HAD-like domain
GO :
0006812 : Biological Process : cation transport
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000178)
HIX0000178
HIT000244365
(
AJ009947
)
(P-type ATPase family protein.)
genome : 17,312,457 - 17,316,224 (3,768)
query : 12 - 1,071 (1,060/1,078)
6 exons
identity = 0.995
3'(0.997;1.000;1.000;0.990;0.993;0.949)5'
coverage = 0.983
InterPro :
IPR001757 : P-type ATPase
IPR023214 : HAD-like domain
GO :
0006812 : Biological Process : cation transport
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000178)
HIX0000178
HIT000571206 (
ENST00000466561
)
(P-type ATPase family protein.)
genome : 17,312,454 - 17,318,353 (5,900)
query : 1 - 1,851 (1,851/1,851)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000178)
HIX0000178
HIT000602775 (
ENST00000502418
)
(P-type ATPase family protein.)
genome : 17,312,476 - 17,316,498 (4,023)
query : 1 - 1,201 (1,201/1,201)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000178)
HIX0000178
HIT000603831 (
ENST00000503552
)
(P-type ATPase, A domain containing protein.)
genome : 17,316,670 - 17,322,778 (6,109)
query : 1 - 774 (774/774)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, mito 9, lyso 3, plas 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000178)
HIX0000178
HIT000568635 (
ENST00000463860
)
(P-type ATPase family protein.)
genome : 17,321,982 - 17,327,342 (5,361)
query : 1 - 1,639 (1,639/1,639)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000178)
HIX0000178
HIT000333567
(
AY987009
)
(P-type ATPase family protein.)
genome : 17,322,354 - 17,326,786 (4,433)
query : 1 - 687 (687/687)
5 exons
identity = 0.997
3'(0.993;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001757 : P-type ATPase
IPR008250 : P-type ATPase, A domain
GO :
0000166 : Molecular Function : nucleotide binding
0006812 : Biological Process : cation transport
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 7, plas 4, mito_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000178)
HIX0000178
HIT000603183 (
ENST00000502860
)
(P-type ATPase family protein.)
genome : 17,322,354 - 17,326,786 (4,433)
query : 1 - 687 (687/687)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 7, plas 4, mito_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000178)
HIX0000178
HIT000609261 (
ENST00000509392
)
(Conserved hypothetical protein.)
genome : 17,322,529 - 17,323,189 (661)
query : 1 - 572 (572/572)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, nucl 6.5, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000178)
HIX0000178
HIT000606253 (
ENST00000506174
)
(P-type ATPase family protein.)
genome : 17,322,582 - 17,326,807 (4,226)
query : 1 - 573 (573/573)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000178)
HIX0000178
HIT000609895 (
ENST00000510069
)
(P-type ATPase, subfamily V protein.)
genome : 17,326,506 - 17,332,209 (5,704)
query : 1 - 962 (962/962)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, plas 4, mito 2, pero 2, mito_pero 2,
cysk_plas 2, cyto_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000178)
HIX0000178
HIT000611645 (
ENST00000511957
)
(P-type ATPase, A domain containing protein.)
genome : 17,326,764 - 17,331,567 (4,804)
query : 1 - 569 (569/569)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 7, mito 7, cyto_mito 7, plas 4, extr 4, pero 4,
extr_plas 4, cyto_golg 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000178)
HIX0000178
HIT000608164 (
ENST00000508222
)
(P-type ATPase, A domain containing protein.)
genome : 17,326,778 - 17,331,569 (4,792)
query : 21 - 562 (542/562)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.964
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 10.5, plas 4, pero 4, mito 2,
E.R. 2, extr_plas 2, E.R._mito 2, cysk_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000178)
HIX0000178
HIT000609474 (
ENST00000509619
)
(P-type ATPase, subfamily V protein.)
genome : 17,328,815 - 17,332,260 (3,446)
query : 1 - 570 (570/570)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 8, plas 6.5, pero 6, extr_plas 5, E.R._mito 5,
nucl 3, mito 3, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000178)
HIX0214023
HIT000579313 (
ENST00000475049
)
(Alpha-helical ferredoxin domain containing protein.)
genome : 17,345,247 - 17,349,655 (4,409)
query : 1 - 397 (397/397)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 7, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214023)
HIX0214023
HIT000588915 (
ENST00000485092
)
(Alpha-helical ferredoxin domain containing protein.)
genome : 17,345,247 - 17,349,531 (4,285)
query : 1 - 636 (636/636)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 7, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214023)
HIX0214007
HIT000594803 (
ENST00000491274
)
(Succinate dehydrogenase/fumarate reductase iron-sulphur protein family protein.)
genome : 17,350,468 - 17,371,714 (21,247)
query : 1 - 649 (649/649)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, nucl 6.5, extr 6, cyto_nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214007)
HIX0214007
HIT000579743 (
ENST00000475506
)
(Succinate dehydrogenase/fumarate reductase iron-sulphur protein family protein.)
genome : 17,354,151 - 17,371,372 (17,222)
query : 1 - 550 (550/550)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11.5, cyto 10, mito 10, extr 6, nucl 5,
E.R._mito 5, mito_pero 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214007)
HIX0214007
HIT000567855 (
ENST00000463045
)
(Succinate dehydrogenase/fumarate reductase iron-sulphur protein family protein.)
genome : 17,354,244 - 17,378,983 (24,740)
query : 1 - 702 (702/702)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, cyto 10, cyto_nucl 8.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214007)
HIX0214007
HIT000571257 (
ENST00000466613
)
(Succinate dehydogenase/fumarate reductase N-terminal domain containing protein.)
genome : 17,359,025 - 17,380,526 (21,502)
query : 1 - 828 (828/828)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214007)
HIX0213832
HIT000043037
(
AK123164
)
Representative transcript
(Protein-arginine deiminase family protein.)
genome : 17,394,095 - 17,401,846 (7,752)
query : 1 - 2,388 (2,388/2,388)
4 exons
identity = 0.997
3'(0.999;1.000;0.988;0.992)5'
coverage = 1.000
InterPro :
IPR004303 : Protein-arginine deiminase
IPR013530 : Protein-arginine deiminase, C-terminal
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto_mito 4.5, cyto 4, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213832)
HIX0213832
HIT000583594 (
ENST00000479534
)
(Protein-arginine deiminase family protein.)
genome : 17,394,095 - 17,401,846 (7,752)
query : 1 - 2,389 (2,389/2,389)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto_mito 4.5, cyto 4, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213832)
HIX0213817
HIT000034515
(
BC009701
)
Representative transcript
(Protein-arginine deiminase family protein.)
genome : 17,405,526 - 17,445,930 (40,405)
query : 1 - 1,607 (1,607/1,626)
11 exons
identity = 0.999
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR004303 : Protein-arginine deiminase
IPR008972 : Cupredoxin
IPR013530 : Protein-arginine deiminase, C-terminal
IPR013732 : Protein-arginine deiminase (PAD) N-terminal
IPR013733 : Protein-arginine deiminase (PAD), central domain
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
0018101 : Biological Process : protein citrullination
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213817)
HIX0213817
HIT000356761 (
ENST00000375481
)
(Protein-arginine deiminase family protein.)
genome : 17,405,526 - 17,445,930 (40,405)
query : 1 - 1,607 (1,607/1,607)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213817)
HIX0203493
HIT000439425_02
(
DQ572894
)
Representative transcript
(Non-protein coding transcript.)
genome : 17,477,834 - 17,477,862 (29)
query : 1 - 30 (30/30)
1 exon
identity = 0.967
3'(0.967)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203493)
HIX0023763
HIT000047703
(
AK127830
)
Representative transcript
(Conserved hypothetical protein.)
genome : 17,516,278 - 17,524,112 (7,835)
query : 1 - 4,600 (4,600/4,600)
4 exons
identity = 0.998
5'(1.000;1.000;0.997;0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25.5, extr_plas 13.5, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023763)
Ortholog candidate ( ->
Evola
)
Pan
sp. (Chimpanzee) : ENSPTRT00000059576
HIX0023763
HIT000510361 (
ENST00000412427
)
(Conserved hypothetical protein.)
genome : 17,516,278 - 17,524,112 (7,835)
query : 1 - 4,676 (4,676/4,676)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24.5, extr_plas 13.5, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023763)
HIX0000181
HIT000009926
(
AK026652
)
(Protein-arginine deiminase type-1; EC=3.5.3.15; Peptidylarginine deiminase I; Protein-arginine deiminase type I;)
genome : 17,531,621 - 17,572,500 (40,880)
query : 3 - 3,848 (3,846/3,867)
16 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.992;0.994;
0.990;1.000;0.991;1.000;1.000;1.000;1.000;
1.000;0.999)3'
coverage = 0.999
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR008972 : Cupredoxin
IPR013530 : Protein-arginine deiminase, C-terminal
IPR013732 : Protein-arginine deiminase (PAD) N-terminal
IPR013733 : Protein-arginine deiminase (PAD), central domain
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
0018101 : Biological Process : protein citrullination
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18.5, mito_pero 10.5, nucl 7, cyto_nucl 6,
cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000181)
HIX0000181
HIT000384671
(
AK225541
)
(Protein-arginine deiminase type-1; EC=3.5.3.15; Peptidylarginine deiminase I; Protein-arginine deiminase type I;)
genome : 17,531,621 - 17,571,021 (39,401)
query : 3 - 2,369 (2,367/2,369)
16 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;0.992;0.994;
0.990;1.000;0.991;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 0.999
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR008972 : Cupredoxin
IPR013530 : Protein-arginine deiminase, C-terminal
IPR013732 : Protein-arginine deiminase (PAD) N-terminal
IPR013733 : Protein-arginine deiminase (PAD), central domain
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
0018101 : Biological Process : protein citrullination
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18.5, mito_pero 10.5, nucl 7, cyto_nucl 6,
cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000181)
HIX0000181
HIT000433510
(
AK314644
)
(Protein-arginine deiminase type-1; EC=3.5.3.15; Peptidylarginine deiminase I; Protein-arginine deiminase type I;)
genome : 17,531,620 - 17,570,738 (39,119)
query : 1 - 2,085 (2,085/2,085)
16 exons
identity = 0.999
5'(1.000;0.994;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.992;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR008972 : Cupredoxin
IPR013530 : Protein-arginine deiminase, C-terminal
IPR013732 : Protein-arginine deiminase (PAD) N-terminal
IPR013733 : Protein-arginine deiminase (PAD), central domain
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
0018101 : Biological Process : protein citrullination
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18.5, mito_pero 10.5, nucl 7, cyto_nucl 6,
cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000181)
HIX0000181
HIT000204332 (
NM_013358
)
(Protein-arginine deiminase type-1; EC=3.5.3.15; Peptidylarginine deiminase I; Protein-arginine deiminase type I;)
genome : 17,531,621 - 17,572,501 (40,881)
query : 1 - 3,847 (3,847/3,847)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, nucl 7, cyto_nucl 6, cyto 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000181)
HIX0000181
HIT000356751 (
ENST00000375471
)
(Protein-arginine deiminase type-1; EC=3.5.3.15; Peptidylarginine deiminase I; Protein-arginine deiminase type I;)
genome : 17,531,621 - 17,572,500 (40,880)
query : 1 - 3,846 (3,846/3,846)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, nucl 7, cyto_nucl 6, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000181)
HIX0000181
HIT000059096
(
AB033768
)
(Protein-arginine deiminase type-1; EC=3.5.3.15; Peptidylarginine deiminase I; Protein-arginine deiminase type I;)
genome : 17,531,630 - 17,571,349 (39,720)
query : 1 - 2,686 (2,686/2,711)
16 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.992;1.000;1.000;
1.000;1.000;1.000;0.993;0.993;0.989;1.000;
1.000;0.999)3'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR008972 : Cupredoxin
IPR013530 : Protein-arginine deiminase, C-terminal
IPR013732 : Protein-arginine deiminase (PAD) N-terminal
IPR013733 : Protein-arginine deiminase (PAD), central domain
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
0018101 : Biological Process : protein citrullination
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, nucl 7, cyto_nucl 6, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000181)
HIX0000181
HIT000390364
(
BC130574
)
Representative transcript
(Protein-arginine deiminase type-1; EC=3.5.3.15; Peptidylarginine deiminase I; Protein-arginine deiminase type I;)
genome : 17,531,642 - 17,570,823 (39,182)
query : 1 - 2,148 (2,148/2,148)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.991;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR008972 : Cupredoxin
IPR013530 : Protein-arginine deiminase, C-terminal
IPR013732 : Protein-arginine deiminase (PAD) N-terminal
IPR013733 : Protein-arginine deiminase (PAD), central domain
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
0018101 : Biological Process : protein citrullination
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, nucl 7, cyto_nucl 6, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000181)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AB010998
Mus
sp. (Mouse) : AB013848
Bos
sp. (Cow) : BC147911
Oryzias
sp. (Medaka) : ENSORLT00000009454
Pongo
sp. (Orangutan) : ENSPPYT00000002165
Pan
sp. (Chimpanzee) : ENSPTRT00000000504
Tetraodon
sp. (Tetraodon) : GSTENT00033904001
Macaca
sp. (Macaque) : XM_001088797
Monodelphis
sp. (Opossum) : XM_001376772
Equus
sp. (Horse) : XM_001914783
Gallus
sp. (Chicken) : XM_425729
Canis
sp. (Dog) : XM_846839
HIX0000181
HIT000500424
(
BC136402
)
(Protein-arginine deiminase type-1; EC=3.5.3.15; Peptidylarginine deiminase I; Protein-arginine deiminase type I;)
genome : 17,531,642 - 17,570,823 (39,182)
query : 1 - 2,148 (2,148/2,148)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.991;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR008972 : Cupredoxin
IPR013530 : Protein-arginine deiminase, C-terminal
IPR013732 : Protein-arginine deiminase (PAD) N-terminal
IPR013733 : Protein-arginine deiminase (PAD), central domain
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
0018101 : Biological Process : protein citrullination
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, nucl 7, cyto_nucl 6, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000181)
HIX0000181
HIT000587387 (
ENST00000483501
)
(Protein-arginine deiminase type-1; EC=3.5.3.15; Peptidylarginine deiminase I; Protein-arginine deiminase type I;)
genome : 17,549,982 - 17,552,653 (2,672)
query : 1 - 513 (513/513)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 10, cyto 10, nucl 8, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000181)
HIX0000181
HIT000487899
(
AK293275
)
(Protein-arginine deiminase type-1; EC=3.5.3.15; Peptidylarginine deiminase I; Protein-arginine deiminase type I;)
genome : 17,559,776 - 17,570,840 (11,065)
query : 2 - 940 (939/940)
6 exons
identity = 0.998
5'(0.987;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR013530 : Protein-arginine deiminase, C-terminal
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 8.5, mito 7, cyto_nucl 7, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000181)
HIX0000181
HIT000636544 (
ENST00000537499
)
(Protein-arginine deiminase type-1; EC=3.5.3.15; Peptidylarginine deiminase I; Protein-arginine deiminase type I;)
genome : 17,559,776 - 17,570,840 (11,065)
query : 1 - 939 (939/939)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 8.5, mito 7, cyto_nucl 7, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000181)
HIX0000181
HIT000493162
(
AK298538
)
(Protein-arginine deiminase type-1; EC=3.5.3.15; Peptidylarginine deiminase I; Protein-arginine deiminase type I;)
genome : 17,559,778 - 17,571,505 (11,728)
query : 1 - 1,476 (1,476/1,476)
5 exons
identity = 0.999
5'(0.987;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR013530 : Protein-arginine deiminase, C-terminal
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20, cyto_nucl 5.5, nucl 4.5, cyto 3.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000181)
HIX0000181
HIT000511651 (
ENST00000413717
)
(Protein-arginine deiminase type-1; EC=3.5.3.15; Peptidylarginine deiminase I; Protein-arginine deiminase type I;)
genome : 17,559,778 - 17,571,505 (11,728)
query : 1 - 1,476 (1,476/1,476)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20, cyto_nucl 5.5, nucl 4.5, cyto 3.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000181)
HIX0000181
HIT000493516
(
AK298892
)
(Protein-arginine deiminase type-1; EC=3.5.3.15; Peptidylarginine deiminase I; Protein-arginine deiminase type I;)
genome : 17,559,850 - 17,571,603 (11,754)
query : 1 - 1,483 (1,483/1,483)
5 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR013530 : Protein-arginine deiminase, C-terminal
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto_mito 14.5, cyto 8, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000181)
HIX0000181
HIT000635597 (
ENST00000536552
)
(Protein-arginine deiminase type-1; EC=3.5.3.15; Peptidylarginine deiminase I; Protein-arginine deiminase type I;)
genome : 17,559,850 - 17,571,603 (11,754)
query : 1 - 1,483 (1,483/1,483)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto_mito 14.5, cyto 8, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000181)
HIX0000181
HIT000047388
(
AK127515
)
(Protein-arginine deiminase type-1; EC=3.5.3.15; Peptidylarginine deiminase I; Protein-arginine deiminase type I;)
genome : 17,566,127 - 17,572,499 (6,373)
query : 1 - 3,124 (3,124/3,124)
2 exons
identity = 1.000
5'(1.000;0.999)3'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR013530 : Protein-arginine deiminase, C-terminal
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 12.5, extr 8, nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000181)
HIX0000181
HIT000565224 (
ENST00000460293
)
(Protein-arginine deiminase type-4; EC=3.5.3.15; PAD-R4; Peptidylarginine deiminase IV; Peptidylarginine deiminase type alpha; Protein-arginine deiminase type IV;)
genome : 17,566,127 - 17,572,499 (6,373)
query : 1 - 3,124 (3,124/3,124)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 12.5, extr 8, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000181)
HIX0000181
HIT000427972
(
AK309106
)
(Protein-arginine deiminase type-1; EC=3.5.3.15; Peptidylarginine deiminase I; Protein-arginine deiminase type I;)
genome : 17,566,190 - 17,571,558 (5,369)
query : 1 - 1,143 (1,143/1,143)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR013530 : Protein-arginine deiminase, C-terminal
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, extr 12, cyto_nucl 8.5, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000181)
HIX0028495
HIT000058870
(
AB026831
)
(Protein-arginine deiminase type-3; EC=3.5.3.15; Peptidylarginine deiminase III; Protein-arginine deiminase type III;)
genome : 17,575,593 - 17,610,725 (35,133)
query : 2 - 3,183 (3,182/3,183)
16 exons
identity = 0.993
5'(1.000;1.000;0.986;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.993;1.000;1.000;
1.000;0.986)3'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR008972 : Cupredoxin
IPR013530 : Protein-arginine deiminase, C-terminal
IPR013732 : Protein-arginine deiminase (PAD) N-terminal
IPR013733 : Protein-arginine deiminase (PAD), central domain
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
0018101 : Biological Process : protein citrullination
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, mito 11, cyto 3.5, cyto_nucl 3.5, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028495)
HIX0028495
HIT000205978 (
NM_016233
)
(Protein-arginine deiminase type-3; EC=3.5.3.15; Peptidylarginine deiminase III; Protein-arginine deiminase type III;)
genome : 17,575,593 - 17,610,728 (35,136)
query : 1 - 3,189 (3,189/3,189)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, mito 11, cyto 3.5, cyto_nucl 3.5, pero 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028495)
HIX0028495
HIT000356740 (
ENST00000375460
)
(Protein-arginine deiminase type-3; EC=3.5.3.15; Peptidylarginine deiminase III; Protein-arginine deiminase type III;)
genome : 17,575,593 - 17,610,728 (35,136)
query : 1 - 3,189 (3,189/3,189)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, mito 11, cyto 3.5, cyto_nucl 3.5, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028495)
HIX0028495
HIT000339260
(
BC109091
)
(Protein-arginine deiminase type-3; EC=3.5.3.15; Peptidylarginine deiminase III; Protein-arginine deiminase type III;)
genome : 17,575,606 - 17,610,153 (34,548)
query : 1 - 2,601 (2,601/2,601)
16 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.993;1.000;1.000;1.000;
1.000;0.998)3'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR008972 : Cupredoxin
IPR013530 : Protein-arginine deiminase, C-terminal
IPR013732 : Protein-arginine deiminase (PAD) N-terminal
IPR013733 : Protein-arginine deiminase (PAD), central domain
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
0018101 : Biological Process : protein citrullination
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, mito 11, cyto 3.5, cyto_nucl 3.5, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028495)
HIX0028495
HIT000096780
(
BC041592
)
Representative transcript
(Protein-arginine deiminase type-3; EC=3.5.3.15; Peptidylarginine deiminase III; Protein-arginine deiminase type III;)
genome : 17,575,607 - 17,610,726 (35,120)
query : 1 - 3,173 (3,173/3,194)
16 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.999)3'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR008972 : Cupredoxin
IPR013530 : Protein-arginine deiminase, C-terminal
IPR013732 : Protein-arginine deiminase (PAD) N-terminal
IPR013733 : Protein-arginine deiminase (PAD), central domain
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
0018101 : Biological Process : protein citrullination
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, mito 11, cyto 3.5, cyto_nucl 3.5, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028495)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AB011020
Mus
sp. (Mouse) : AB013849
Rattus
sp. (Rat) : D88034
Canis
sp. (Dog) : ENSCAFT00000025033
Danio
sp. (Zebrafish) : ENSDART00000064842
Equus
sp. (Horse) : ENSECAT00000013930
Oryzias
sp. (Medaka) : ENSORLT00000009454
Pongo
sp. (Orangutan) : ENSPPYT00000002164
Tetraodon
sp. (Tetraodon) : GSTENT00033904001
Takifugu
sp. (Fugu) : SINFRUT00000134773
Macaca
sp. (Macaque) : XM_001089024
Monodelphis
sp. (Opossum) : XM_001365756
Pan
sp. (Chimpanzee) : XM_524563
Bos
sp. (Cow) : XM_864153
HIX0028495
HIT000339261
(
BC109092
)
(Protein-arginine deiminase type-3; EC=3.5.3.15; Peptidylarginine deiminase III; Protein-arginine deiminase type III;)
genome : 17,575,607 - 17,610,153 (34,547)
query : 1 - 2,600 (2,600/2,600)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.999)3'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR008972 : Cupredoxin
IPR013530 : Protein-arginine deiminase, C-terminal
IPR013732 : Protein-arginine deiminase (PAD) N-terminal
IPR013733 : Protein-arginine deiminase (PAD), central domain
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
0018101 : Biological Process : protein citrullination
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, mito 11, cyto 3.5, cyto_nucl 3.5, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028495)
HIX0000182
HIT000002374
(
AF229067
)
(Protein-arginine deiminase type-4; EC=3.5.3.15; HL-60 PAD; Peptidylarginine deiminase IV; Protein-arginine deiminase type IV;)
genome : 17,634,690 - 17,661,291 (26,602)
query : 2 - 832 (831/832)
4 exons
identity = 0.983
5'(1.000;0.989;0.985;0.977)3'
coverage = 0.999
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 8.33333, nucl 7.5, cyto 6,
cyto_pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000182)
HIX0000182
HIT000204131 (
NM_012387
)
(Protein-arginine deiminase type-4; EC=3.5.3.15; HL-60 PAD; Peptidylarginine deiminase IV; Protein-arginine deiminase type IV;)
genome : 17,634,690 - 17,690,495 (55,806)
query : 1 - 2,265 (2,265/2,265)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 10, nucl 8.5, cyto 8.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000182)
HIX0000182
HIT000433705
(
AK314839
)
(Protein-arginine deiminase type-4; EC=3.5.3.15; HL-60 PAD; Peptidylarginine deiminase IV; Protein-arginine deiminase type IV;)
genome : 17,634,690 - 17,690,250 (55,561)
query : 1 - 2,020 (2,020/2,020)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.994;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR008972 : Cupredoxin
IPR013530 : Protein-arginine deiminase, C-terminal
IPR013732 : Protein-arginine deiminase (PAD) N-terminal
IPR013733 : Protein-arginine deiminase (PAD), central domain
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
0018101 : Biological Process : protein citrullination
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 10, nucl 8.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000182)
HIX0000182
HIT000356733 (
ENST00000375453
)
(Protein-arginine deiminase type-4; EC=3.5.3.15; HL-60 PAD; Peptidylarginine deiminase IV; Protein-arginine deiminase type IV;)
genome : 17,634,690 - 17,661,291 (26,602)
query : 1 - 841 (841/841)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 7.5, cyto_nucl 7.5, extr_plas 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000182)
HIX0000182
HIT000356728 (
ENST00000375448
)
(Protein-arginine deiminase type-4; EC=3.5.3.15; HL-60 PAD; Peptidylarginine deiminase IV; Protein-arginine deiminase type IV;)
genome : 17,634,692 - 17,690,499 (55,808)
query : 1 - 2,267 (2,267/2,267)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 10, nucl 8.5, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000182)
HIX0000182
HIT000058537
(
AB017919
)
Representative transcript
(Protein-arginine deiminase type-4; EC=3.5.3.15; HL-60 PAD; Peptidylarginine deiminase IV; Protein-arginine deiminase type IV;)
genome : 17,634,692 - 17,690,495 (55,804)
query : 1 - 2,263 (2,263/2,263)
16 exons
identity = 0.998
5'(1.000;0.989;0.985;0.985;1.000;1.000;1.000;
1.000;1.000;0.991;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR008972 : Cupredoxin
IPR013530 : Protein-arginine deiminase, C-terminal
IPR013732 : Protein-arginine deiminase (PAD) N-terminal
IPR013733 : Protein-arginine deiminase (PAD), central domain
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
0018101 : Biological Process : protein citrullination
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 10, nucl 9.5, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000182)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AB010999
Mus
sp. (Mouse) : AK137625
Canis
sp. (Dog) : ENSCAFT00000035689
Equus
sp. (Horse) : ENSECAT00000011664
Monodelphis
sp. (Opossum) : ENSMODT00000003331
Oryzias
sp. (Medaka) : ENSORLT00000009420
Pongo
sp. (Orangutan) : ENSPPYT00000002163
Gallus
sp. (Chicken) : XM_425729
Pan
sp. (Chimpanzee) : XM_513116
Bos
sp. (Cow) : XM_584904
Macaca
sp. (Macaque) : XR_010782
HIX0000182
HIT000423304
(
AK290507
)
(Protein-arginine deiminase type-4; EC=3.5.3.15; HL-60 PAD; Peptidylarginine deiminase IV; Protein-arginine deiminase type IV;)
genome : 17,634,692 - 17,690,259 (55,568)
query : 1 - 2,027 (2,027/2,027)
16 exons
identity = 0.998
5'(1.000;1.000;0.985;1.000;0.992;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.990;1.000;
1.000;0.996)3'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR008972 : Cupredoxin
IPR013530 : Protein-arginine deiminase, C-terminal
IPR013732 : Protein-arginine deiminase (PAD) N-terminal
IPR013733 : Protein-arginine deiminase (PAD), central domain
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
0018101 : Biological Process : protein citrullination
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 9.5, cyto 8.5, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000182)
HIX0000182
HIT000428503
(
AK309637
)
(Protein-arginine deiminase type-4; EC=3.5.3.15; HL-60 PAD; Peptidylarginine deiminase IV; Protein-arginine deiminase type IV;)
genome : 17,634,698 - 17,674,911 (40,214)
query : 1 - 1,543 (1,543/1,543)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR008972 : Cupredoxin
IPR013530 : Protein-arginine deiminase, C-terminal
IPR013732 : Protein-arginine deiminase (PAD) N-terminal
IPR013733 : Protein-arginine deiminase (PAD), central domain
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
0018101 : Biological Process : protein citrullination
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, nucl 8, cyto_nucl 7.5, cyto 5, pero 3,
mito 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000182)
HIX0000182
HIT000039984
(
BC025718
)
(Protein-arginine deiminase type-4; EC=3.5.3.15; HL-60 PAD; Peptidylarginine deiminase IV; Protein-arginine deiminase type IV;)
genome : 17,634,706 - 17,690,499 (55,794)
query : 1 - 2,253 (2,253/2,313)
16 exons
identity = 0.997
5'(1.000;0.989;0.985;0.985;1.000;1.000;1.000;
1.000;1.000;0.981;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR008972 : Cupredoxin
IPR013530 : Protein-arginine deiminase, C-terminal
IPR013732 : Protein-arginine deiminase (PAD) N-terminal
IPR013733 : Protein-arginine deiminase (PAD), central domain
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
0018101 : Biological Process : protein citrullination
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 10, nucl 9.5, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000182)
HIX0000182
HIT000573488 (
ENST00000468945
)
(Protein-arginine deiminase type-4; EC=3.5.3.15; HL-60 PAD; Peptidylarginine deiminase IV; Protein-arginine deiminase type IV;)
genome : 17,672,529 - 17,674,702 (2,174)
query : 1 - 373 (373/373)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 9, mito 7, extr_plas 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000182)
HIX0000182
HIT000590768 (
ENST00000487048
)
(Protein-arginine deiminase type-4; EC=3.5.3.15; HL-60 PAD; Peptidylarginine deiminase IV; Protein-arginine deiminase type IV;)
genome : 17,674,422 - 17,682,942 (8,521)
query : 1 - 513 (513/513)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, nucl 13, cyto 12, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000182)
HIX0000182
HIT000571624 (
ENST00000467001
)
(Protein-arginine deiminase type-4; EC=3.5.3.15; HL-60 PAD; Peptidylarginine deiminase IV; Protein-arginine deiminase type IV;)
genome : 17,675,225 - 17,682,954 (7,730)
query : 1 - 459 (459/471)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.975
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 14.5, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000182)
HIX0028688
HIT000331821
(
AY443100
)
Representative transcript
(Protein-arginine deiminase type-6; EC=3.5.3.15; Peptidyl arginine deiminase-like protein; Peptidylarginine deiminase VI; hPADVI; Protein-arginine deiminase type VI;)
genome : 17,698,691 - 17,728,195 (29,505)
query : 2 - 2,397 (2,396/2,397)
16 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.991;1.000;1.000;0.987;0.992;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR008972 : Cupredoxin
IPR013530 : Protein-arginine deiminase, C-terminal
IPR013732 : Protein-arginine deiminase (PAD) N-terminal
IPR013733 : Protein-arginine deiminase (PAD), central domain
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
0018101 : Biological Process : protein citrullination
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, extr 9, cyto_nucl 8.66667,
cyto_pero 6.83333, nucl 5.5, E.R._mito 2.5, mito 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028688)
Ortholog candidate ( ->
Evola
)
Canis
sp. (Dog) : AY682099
Mus
sp. (Mouse) : BC053724
Bos
sp. (Cow) : BC147911
Danio
sp. (Zebrafish) : ENSDART00000064842
Monodelphis
sp. (Opossum) : ENSMODT00000003331
Oryzias
sp. (Medaka) : ENSORLT00000009454
Pongo
sp. (Orangutan) : ENSPPYT00000002162
Rattus
sp. (Rat) : ENSRNOT00000055867
Takifugu
sp. (Fugu) : SINFRUT00000134773
Macaca
sp. (Macaque) : XM_001089244
Equus
sp. (Horse) : XM_001488531
Gallus
sp. (Chicken) : XM_425729
Pan
sp. (Chimpanzee) : XM_524564
HIX0028688
HIT000312178 (
ENST00000358481
)
(Protein-arginine deiminase type-6; EC=3.5.3.15; Peptidyl arginine deiminase-like protein; Peptidylarginine deiminase VI; hPADVI; Protein-arginine deiminase type VI;)
genome : 17,698,691 - 17,728,195 (29,505)
query : 1 - 2,396 (2,396/2,396)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.991;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, extr 9, cyto_nucl 8.66667,
cyto_pero 6.83333, nucl 5.5, E.R._mito 2.5, mito 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028688)
HIX0028688
HIT000532696 (
ENST00000434762
)
(Protein-arginine deiminase type-6; EC=3.5.3.15; Peptidyl arginine deiminase-like protein; Peptidylarginine deiminase VI; hPADVI; Protein-arginine deiminase type VI;)
genome : 17,698,691 - 17,728,195 (29,505)
query : 1 - 2,397 (2,397/2,397)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto_nucl 8.5, cyto 7, E.R._mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028688)
HIX0028688
HIT000320420 (
NM_207421
)
(Protein-arginine deiminase type-6; EC=3.5.3.15; Peptidyl arginine deiminase-like protein; Peptidylarginine deiminase VI; hPADVI; Protein-arginine deiminase type VI;)
genome : 17,698,741 - 17,728,195 (29,455)
query : 1 - 2,346 (2,346/2,346)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.991;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, extr 9, cyto_nucl 8.66667,
cyto_pero 6.83333, nucl 5.5, E.R._mito 2.5, mito 2, lyso 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028688)
HIX0028688
HIT000254372
(
AY422079
)
(Protein-arginine deiminase type-6; EC=3.5.3.15; Peptidyl arginine deiminase-like protein; Peptidylarginine deiminase VI; hPADVI; Protein-arginine deiminase type VI;)
genome : 17,698,741 - 17,727,959 (29,219)
query : 1 - 2,110 (2,110/2,110)
16 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.991;1.000;1.000;1.000;1.000;1.000;
1.000;0.992)3'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR008972 : Cupredoxin
IPR013530 : Protein-arginine deiminase, C-terminal
IPR013732 : Protein-arginine deiminase (PAD) N-terminal
IPR013733 : Protein-arginine deiminase (PAD), central domain
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
0018101 : Biological Process : protein citrullination
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, extr 9, cyto_nucl 8.66667,
cyto_pero 6.83333, nucl 5.5, E.R._mito 2.5, mito 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028688)
HIX0020934
HIT000207407 (
NM_018715
)
(Protein RCC2; RCC1-like protein TD-60; Telophase disk protein of 60 kDa;)
genome : 17,733,251 - 17,766,250 (33,000)
query : 1 - 4,122 (4,122/4,139)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020934)
HIX0020934
HIT000560340 (
NM_001136204
)
(Protein RCC2; RCC1-like protein TD-60; Telophase disk protein of 60 kDa;)
genome : 17,733,251 - 17,765,059 (31,809)
query : 1 - 3,953 (3,953/3,970)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020934)
HIX0020934
HIT000435440
(
BC142946
)
(Protein RCC2.)
genome : 17,733,258 - 17,764,815 (31,558)
query : 1 - 3,699 (3,699/3,715)
12 exons
identity = 0.996
3'(0.996;0.987;1.000;0.991;0.994;1.000;1.000;
1.000;1.000;1.000;0.989;0.989)5'
coverage = 0.999
InterPro :
IPR000408 : Regulator of chromosome condensation, RCC1
IPR009091 : Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
IPR028641 : Protein RCC2
GO :
0000278 : Biological Process : mitotic cell cycle
0007032 : Biological Process : endosome organization
0051301 : Biological Process : cell division
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto 2, mito 2, cyto_mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020934)
HIX0020934
HIT000026340
(
AL359612
)
(Protein RCC2.)
genome : 17,733,271 - 17,752,124 (18,854)
query : 6 - 3,450 (3,445/3,467)
10 exons
identity = 0.999
3'(1.000;0.987;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.966)5'
coverage = 0.999
InterPro :
IPR000408 : Regulator of chromosome condensation, RCC1
IPR009091 : Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020934)
HIX0020934
HIT000356716 (
ENST00000375436
)
(Protein RCC2; RCC1-like protein TD-60; Telophase disk protein of 60 kDa;)
genome : 17,733,256 - 17,766,220 (32,965)
query : 1 - 4,087 (4,087/4,087)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020934)
HIX0020934
HIT000045894
(
AK126021
)
(Protein RCC2.)
genome : 17,733,256 - 17,736,300 (3,045)
query : 1 - 3,041 (3,041/3,041)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 12, extr 8, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020934)
HIX0161037
HIT000537511 (
ENST00000439577
)
(Hypothetical short protein.)
genome : 17,733,256 - 17,733,878 (623)
query : 1 - 311 (311/311)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
This sequence is too short.
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161037)
HIX0020934
HIT000247901
(
AJ421269
)
Representative transcript
(Protein RCC2; RCC1-like protein TD-60; Telophase disk protein of 60 kDa;)
genome : 17,733,279 - 17,766,220 (32,942)
query : 48 - 4,114 (4,067/4,114)
13 exons
identity = 0.999
3'(0.998;1.000;1.000;0.991;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.989
InterPro :
IPR000408 : Regulator of chromosome condensation, RCC1
IPR009091 : Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
IPR028641 : Protein RCC2
GO :
0000278 : Biological Process : mitotic cell cycle
0007032 : Biological Process : endosome organization
0051301 : Biological Process : cell division
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020934)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK076046
Danio
sp. (Zebrafish) : BC066628
Gallus
sp. (Chicken) : CR386667
Bos
sp. (Cow) : ENSBTAT00000011314
Canis
sp. (Dog) : ENSCAFT00000024961
Pongo
sp. (Orangutan) : ENSPPYT00000029313
Tetraodon
sp. (Tetraodon) : GSTENT00005898001
Takifugu
sp. (Fugu) : SINFRUT00000128244
Rattus
sp. (Rat) : XM_001072061
Monodelphis
sp. (Opossum) : XM_001376708
Pan
sp. (Chimpanzee) : XM_513117
Equus
sp. (Horse) : XR_044457
HIX0020934
HIT000001185
(
AB040903
)
(Protein RCC2; RCC1-like protein TD-60; Telophase disk protein of 60 kDa;)
genome : 17,733,279 - 17,766,181 (32,903)
query : 1 - 4,028 (4,028/4,028)
13 exons
identity = 0.999
3'(0.998;1.000;1.000;0.991;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020934)
HIX0020934
HIT000455719
(
DQ589188
)
(Non-protein coding transcript.)
genome : 17,733,683 - 17,733,713 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020934)
HIX0020934
HIT000086416
(
BC004933
)
(Protein RCC2.)
genome : 17,734,155 - 17,749,344 (15,190)
query : 1 - 2,489 (2,489/2,522)
9 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.972)5'
coverage = 1.000
InterPro :
IPR000408 : Regulator of chromosome condensation, RCC1
IPR009091 : Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
IPR028641 : Protein RCC2
GO :
0000278 : Biological Process : mitotic cell cycle
0007032 : Biological Process : endosome organization
0051301 : Biological Process : cell division
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020934)
HIX0020934
HIT000009279
(
AK026005
)
(Hypothetical protein.)
genome : 17,734,162 - 17,735,479 (1,318)
query : 1 - 1,316 (1,316/1,338)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 13.5, extr 10, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020934)
HIX0020934
HIT000579165_01 (
ENST00000474892
)
(Hypothetical short protein.)
genome : 17,734,335 - 17,735,542 (1,208)
query : 1 - 783 (783/783)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020934)
HIX0020934
HIT000054026
(
BC053908
)
(Protein RCC2; RCC1-like protein TD-60; Telophase disk protein of 60 kDa;)
genome : 17,735,172 - 17,765,057 (29,886)
query : 1 - 2,028 (2,028/2,042)
12 exons
identity = 0.999
3'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000408 : Regulator of chromosome condensation, RCC1
IPR009091 : Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
IPR028641 : Protein RCC2
GO :
0000278 : Biological Process : mitotic cell cycle
0007032 : Biological Process : endosome organization
0051301 : Biological Process : cell division
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020934)
HIX0020934
HIT000356713 (
ENST00000375433
)
(Protein RCC2; RCC1-like protein TD-60; Telophase disk protein of 60 kDa;)
genome : 17,735,172 - 17,765,057 (29,886)
query : 1 - 2,030 (2,030/2,030)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020934)
HIX0020934
HIT000097154
(
BC042141
)
(Protein RCC2; RCC1-like protein TD-60; Telophase disk protein of 60 kDa;)
genome : 17,735,482 - 17,765,024 (29,543)
query : 1 - 1,687 (1,687/1,711)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000408 : Regulator of chromosome condensation, RCC1
IPR009091 : Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
IPR028641 : Protein RCC2
GO :
0000278 : Biological Process : mitotic cell cycle
0007032 : Biological Process : endosome organization
0051301 : Biological Process : cell division
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020934)
HIX0020934
HIT000690095_01 (
ENST00000578149
)
(Non-protein coding transcript.)
genome : 17,740,127 - 17,740,190 (64)
query : 1 - 64 (64/64)
1 exon
identity = 0.953
3'(0.953)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020934)
HIX0020934
HIT000695350_01 (
ENST00000583469
)
(Non-protein coding transcript.)
genome : 17,740,127 - 17,740,190 (64)
query : 1 - 64 (64/64)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020934)
HIX0213849
HIT000049230
(
AK129959
)
(Conserved hypothetical protein.)
genome : 17,846,827 - 17,909,697 (62,871)
query : 1 - 2,780 (2,780/2,780)
2 exons
identity = 0.996
5'(0.992;0.996)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 17, cyto 8, cyto_nucl 7.16667, cyto_pero 6.16667,
nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213849)
HIX0213849
HIT000532447 (
ENST00000434513
)
(Rho guanine nucleotide exchange factor 10-like protein; GrinchGEF;)
genome : 17,866,330 - 18,017,649 (151,320)
query : 1 - 3,363 (3,363/3,363)
27 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213849)
HIX0213849
HIT000429942
(
AK311076
)
Representative transcript
(Rho guanine nucleotide exchange factor 10-like protein isoform 2.)
genome : 17,866,403 - 18,016,673 (150,271)
query : 1 - 3,594 (3,594/3,594)
26 exons
identity = 0.995
5'(1.000;1.000;0.995;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.989;1.000;
0.938;0.984;0.991;1.000;1.000;1.000;1.000;
1.000;0.994;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR000219 : Dbl homology (DH) domain
IPR017986 : WD40-repeat-containing domain
GO :
0005089 : Molecular Function : Rho guanyl-nucleotide exchange factor activity
0005515 : Molecular Function : protein binding
0035023 : Biological Process : regulation of Rho protein signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213849)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB047595
Mus
sp. (Mouse) : BC059220
Bos
sp. (Cow) : BC114112
Gallus
sp. (Chicken) : CR405993
Pongo
sp. (Orangutan) : CR860834
Canis
sp. (Dog) : ENSCAFT00000024924
Equus
sp. (Horse) : ENSECAT00000007694
Monodelphis
sp. (Opossum) : ENSMODT00000033427
Oryzias
sp. (Medaka) : ENSORLT00000021465
Tetraodon
sp. (Tetraodon) : GSTENT00022971001
Takifugu
sp. (Fugu) : SINFRUT00000159114
Pan
sp. (Chimpanzee) : XM_001156394
Danio
sp. (Zebrafish) : XM_690948
HIX0023746
HIT000046883
(
AK127010
)
Representative transcript
(Conserved hypothetical protein.)
genome : 17,870,449 - 17,874,245 (3,797)
query : 1 - 3,576 (3,576/3,576)
2 exons
identity = 0.998
3'(0.997;0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 16.1667, cyto_plas 12, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023746)
HIX0213849
HIT000356700 (
ENST00000375420
)
(Rho guanine nucleotide exchange factor 10-like protein isoform 1.)
genome : 17,914,911 - 17,966,472 (51,562)
query : 1 - 2,007 (2,007/2,007)
16 exons
identity = 0.995
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.938;0.995;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 15.5, cyto 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213849)
HIX0213849
HIT000494798
(
AK300174
)
(Rho guanine nucleotide exchange factor 10-like protein isoform 1.)
genome : 17,914,911 - 17,966,472 (51,562)
query : 1 - 2,007 (2,007/2,007)
16 exons
identity = 0.995
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.938;0.995;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000219 : Dbl homology (DH) domain
GO :
0005089 : Molecular Function : Rho guanyl-nucleotide exchange factor activity
0035023 : Biological Process : regulation of Rho protein signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 15.5, cyto 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213849)
HIX0213849
HIT000586803 (
ENST00000482892
)
(Rho guanine nucleotide exchange factor 10-like protein isoform 2.)
genome : 17,928,666 - 17,931,377 (2,712)
query : 1 - 539 (539/539)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, mito 7, cyto_nucl 3.66667, cyto 3.5,
E.R._mito 3.5, cyto_pero 3.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213849)
HIX0213849
HIT000048877
(
AK129606
)
(Rho guanine nucleotide exchange factor 10-like protein isoform 2.)
genome : 17,945,609 - 17,946,700 (1,092)
query : 1 - 1,092 (1,092/1,092)
1 exon
identity = 0.990
5'(0.990)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 9.5, nucl 8.5, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213849)
HIX0213849
HIT000091948
(
BC029928
)
(Rho guanine nucleotide exchange factor 10-like protein isoform 2.)
genome : 17,953,462 - 17,954,530 (1,069)
query : 1 - 1,069 (1,069/1,088)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR000219 : Dbl homology (DH) domain
GO :
0005089 : Molecular Function : Rho guanyl-nucleotide exchange factor activity
0035023 : Biological Process : regulation of Rho protein signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, extr 9, cyto 5.5, cyto_nucl 4.5,
extr_plas 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213849)
HIX0213849
HIT000586298 (
ENST00000482359
)
(Rho guanine nucleotide exchange factor 10-like protein isoform 2.)
genome : 17,960,752 - 17,964,498 (3,747)
query : 1 - 604 (604/604)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, cyto 8.5, cyto_nucl 7, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213849)
HIX0213849
HIT000387354
(
BC115368
)
(Rho guanine nucleotide exchange factor 10-like protein isoform 2.)
genome : 17,961,422 - 17,981,155 (19,734)
query : 2 - 583 (582/589)
6 exons
identity = 0.997
5'(0.989;1.000;1.000;1.000;1.000;0.960)3'
coverage = 0.988
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto 11, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213849)
HIX0213849
HIT000571413 (
ENST00000466782
)
(Rho guanine nucleotide exchange factor 10-like protein isoform 2.)
genome : 17,966,248 - 17,981,160 (14,913)
query : 1 - 482 (482/482)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 8, extr_plas 8, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213849)
HIX0213833
HIT000043344
(
AK123471
)
Representative transcript
(Conserved hypothetical protein.)
genome : 18,020,542 - 18,024,369 (3,828)
query : 1 - 2,262 (2,262/2,262)
2 exons
identity = 0.997
5'(0.998;0.996)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 18, cyto_mito 13.3333, cyto_nucl 8.33333,
nucl 5.5, cyto 5.5, cyto_pero 5.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213833)
HIX0213833
HIT000598953 (
ENST00000495593
)
(Conserved hypothetical protein.)
genome : 18,020,542 - 18,024,369 (3,828)
query : 1 - 2,261 (2,261/2,261)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 18, cyto_mito 13.3333, cyto_nucl 8.33333,
nucl 5.5, cyto 5.5, cyto_pero 5.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213833)
HIX0160769
HIT000528474 (
ENST00000430540
)
(Hypothetical short protein.)
genome : 18,044,182 - 18,076,473 (32,292)
query : 1 - 610 (610/610)
4 exons
identity = 0.997
5'(1.000;1.000;1.000;0.993)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160769)
HIX0000184
HIT000317609 (
NM_030812
)
(Actin-like protein 8; Cancer/testis antigen 57; CT57;)
genome : 18,081,808 - 18,153,557 (71,750)
query : 1 - 1,860 (1,860/1,888)
3 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 15.5, cyto 11.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000184)
HIX0000184
HIT000356686 (
ENST00000375406
)
(Actin-like protein 8; Cancer/testis antigen 57; CT57;)
genome : 18,081,808 - 18,153,558 (71,751)
query : 1 - 1,861 (1,861/1,861)
3 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 15.5, cyto 11.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000184)
HIX0000184
HIT000013953
(
AK057339
)
Representative transcript
(Actin-like protein 8; Cancer/testis antigen 57; CT57;)
genome : 18,081,808 - 18,153,556 (71,749)
query : 1 - 1,859 (1,859/1,859)
3 exons
identity = 0.998
5'(0.995)3'
coverage = 1.000
InterPro :
IPR004000 : Actin family
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 16.5, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000184)
HIX0000184
HIT000040643
(
BC028909
)
(Actin-like protein 8; Cancer/testis antigen 57; CT57;)
genome : 18,081,844 - 18,153,557 (71,714)
query : 1 - 1,824 (1,824/1,852)
3 exons
identity = 0.999
5'(1.000)3'
coverage = 1.000
InterPro :
IPR004000 : Actin family
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 16.5, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000184)
Ortholog candidate ( ->
Evola
)
Equus
sp. (Horse) : ENSECAT00000003512
Macaca
sp. (Macaque) : ENSMMUT00000015179
Pongo
sp. (Orangutan) : ENSPPYT00000002159
Pan
sp. (Chimpanzee) : XM_001156798
Monodelphis
sp. (Opossum) : XM_001376457
Bos
sp. (Cow) : XM_606457
Mus
sp. (Mouse) : XR_005062
Monodelphis
sp. (Opossum) : XR_030231
HIX0000184
HIT000218564
(
U20582
)
(Actin-like protein 8.)
genome : 18,081,887 - 18,153,556 (71,670)
query : 1 - 1,769 (1,769/1,769)
3 exons
identity = 0.990
5'(1.000)3'
coverage = 1.000
InterPro :
IPR004000 : Actin family
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 15.5, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000184)
HIX0214419
HIT000078613
(
AF379627
)
(Neuroblastoma breakpoint family member 12; Chromosome 1 amplified sequence 1;)
genome : 16,888,915 - 16,891,346 (2,432)
query : 3 - 1,814 (1,812/1,831)
2 exons
identity = 0.984
3'(0.984;0.978)5'
coverage = 0.999
InterPro :
IPR010630 : Neuroblastoma breakpoint family (NBPF) domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 12.5, extr 10, nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214419)
HIX0214419
HIT000078604
(
AF379613
)
(Neuroblastoma breakpoint family member 15.)
genome : 16,888,922 - 16,892,211 (3,290)
query : 1 - 1,957 (1,957/1,979)
3 exons
identity = 0.992
3'(0.991;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR010630 : Neuroblastoma breakpoint family (NBPF) domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214419)
HIX0214419
HIT000330086
(
AF379628
)
(Neuroblastoma breakpoint family member 15.)
genome : 16,888,922 - 16,892,341 (3,420)
query : 9 - 2,094 (2,086/2,113)
3 exons
identity = 0.986
3'(0.985;1.000;0.991)5'
coverage = 1.000
InterPro :
IPR010630 : Neuroblastoma breakpoint family (NBPF) domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, mito_nucl 11.6667, cyto_nucl 11.3333,
extr 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214419)
HIX0214419
HIT000206797 (
NM_017940
)
(Neuroblastoma breakpoint family member 1;)
genome : 16,888,922 - 16,940,100 (51,179)
query : 1 - 6,167 (6,167/6,183)
29 exons
identity = 0.972
3'(0.994;1.000;1.000;0.602;0.928;1.000;0.994;
1.000;0.995;0.973;0.981;0.981;0.981;0.995;
1.000;0.981;0.990;0.976;0.991;1.000;0.972;
1.000;0.995;0.994;0.969;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 17, cyto 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214419)
HIX0214419
HIT000332525
(
AY894575
)
Representative transcript
(Neuroblastoma breakpoint family member 1;)
genome : 16,890,402 - 16,939,982 (49,581)
query : 1 - 4,568 (4,568/4,596)
29 exons
identity = 0.964
3'(0.986;1.000;1.000;0.602;0.928;1.000;0.994;
1.000;0.995;0.973;0.981;0.981;0.981;0.995;
1.000;0.981;0.990;0.976;0.991;1.000;0.972;
1.000;0.995;0.994;0.969;1.000;1.000;1.000;
1.000)5'
coverage = 0.994
InterPro :
IPR010630 : Neuroblastoma breakpoint family (NBPF) domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 17, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214419)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : XM_001095154
Pan
sp. (Chimpanzee) : XR_019804
HIX0214419
HIT000476432 (
ENST00000392963
)
(Neuroblastoma breakpoint family member 3 isoform 2.)
genome : 16,891,348 - 16,931,429 (40,082)
query : 1 - 2,672 (2,672/2,672)
19 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26.5, cyto_nucl 16, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214419)
HIX0214419
HIT000528514 (
ENST00000430580
)
(Putative neuroblastoma breakpoint family member 5;)
genome : 16,892,131 - 16,940,083 (47,953)
query : 1 - 3,076 (3,076/3,076)
19 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 15, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214419)
HIX0214398
HIT000093478
(
BC034575
)
(Probable cation-transporting ATPase 13A2; EC=3.6.3.-;)
genome : 17,312,453 - 17,331,569 (19,117)
query : 12 - 3,531 (3,520/3,587)
26 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;0.990;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.996
EC number :
EC 3.6.3.-
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR006544 : P-type ATPase, subfamily V
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR023214 : HAD-like domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0006812 : Biological Process : cation transport
0016021 : Cellular Component : integral component of membrane
0016887 : Molecular Function : ATPase activity
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214398)
HIX0214398
HIT000041006
(
BC030267
)
(Probable cation-transporting ATPase 13A2; EC=3.6.3.-;)
genome : 17,312,453 - 17,338,410 (25,958)
query : 1 - 3,681 (3,681/3,732)
27 exons
identity = 0.999
3'(1.000;1.000;1.000;0.990;1.000;1.000;1.000;
0.992;1.000;1.000;1.000;1.000;0.995;1.000;
1.000;1.000;0.992;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.6.3.-
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR006544 : P-type ATPase, subfamily V
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR023214 : HAD-like domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0006812 : Biological Process : cation transport
0016021 : Cellular Component : integral component of membrane
0016887 : Molecular Function : ATPase activity
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214398)
HIX0214398
HIT000254808
(
AY461712
)
Representative transcript
(Probable cation-transporting ATPase 13A2; EC=3.6.3.-;)
genome : 17,312,453 - 17,338,279 (25,827)
query : 3 - 3,839 (3,837/3,859)
29 exons
identity = 0.999
3'(0.998;1.000;0.993;1.000;0.979;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.999
EC number :
EC 3.6.3.-
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR006544 : P-type ATPase, subfamily V
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR023214 : HAD-like domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0006812 : Biological Process : cation transport
0016021 : Cellular Component : integral component of membrane
0016887 : Molecular Function : ATPase activity
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214398)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK156104
Danio
sp. (Zebrafish) : BC128612
Canis
sp. (Dog) : ENSCAFT00000025109
Oryzias
sp. (Medaka) : ENSORLT00000000313
Pongo
sp. (Orangutan) : ENSPPYT00000002169
Tetraodon
sp. (Tetraodon) : GSTENT00020588001
Takifugu
sp. (Fugu) : SINFRUT00000175814
Rattus
sp. (Rat) : XM_001072145
Macaca
sp. (Macaque) : XM_001087655
Monodelphis
sp. (Opossum) : XM_001376836
Equus
sp. (Horse) : XM_001488576
Pan
sp. (Chimpanzee) : XM_513111
Bos
sp. (Cow) : XM_587995
HIX0214398
HIT000208590 (
NM_022089
)
(Probable cation-transporting ATPase 13A2; EC=3.6.3.-;)
genome : 17,312,453 - 17,338,423 (25,971)
query : 1 - 3,996 (3,996/3,996)
29 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214398)
HIX0214398
HIT000550633 (
ENST00000452699
)
(Probable cation-transporting ATPase 13A2; EC=3.6.3.-;)
genome : 17,312,453 - 17,338,423 (25,971)
query : 1 - 3,981 (3,981/3,981)
29 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 3.6.3.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214398)
HIX0214398
HIT000560478 (
NM_001141973
)
(Probable cation-transporting ATPase 13A2; EC=3.6.3.-;)
genome : 17,312,453 - 17,338,423 (25,971)
query : 1 - 3,981 (3,981/3,981)
29 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214398)
HIX0214398
HIT000560479 (
NM_001141974
)
(Probable cation-transporting ATPase 13A2; EC=3.6.3.-;)
genome : 17,312,453 - 17,338,423 (25,971)
query : 1 - 3,694 (3,694/3,694)
27 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214398)
HIX0214398
HIT000134306 (
ENST00000341676
)
(Probable cation-transporting ATPase 13A2; EC=3.6.3.-;)
genome : 17,312,453 - 17,338,410 (25,958)
query : 1 - 3,681 (3,681/3,681)
27 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.6.3.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214398)
HIX0214398
HIT000124691 (
ENST00000326735
)
(Probable cation-transporting ATPase 13A2; EC=3.6.3.-;)
genome : 17,312,453 - 17,338,267 (25,815)
query : 1 - 3,840 (3,840/3,840)
29 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 3.6.3.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214398)
HIX0214398
HIT000250333
(
AL354615
)
(Probable cation-transporting ATPase 13A2; EC=3.6.3.-;)
genome : 17,312,453 - 17,338,267 (25,815)
query : 1 - 3,840 (3,840/3,840)
29 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 3.6.3.-
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR006544 : P-type ATPase, subfamily V
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR023214 : HAD-like domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0006812 : Biological Process : cation transport
0016021 : Cellular Component : integral component of membrane
0016887 : Molecular Function : ATPase activity
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214398)
HIX0214398
HIT000082345
(
AK075310
)
(Probable cation-transporting ATPase 13A2; EC=3.6.3.-;)
genome : 17,312,454 - 17,326,560 (14,107)
query : 1 - 2,821 (2,821/2,821)
19 exons
identity = 0.998
3'(0.998;1.000;0.993;1.000;0.990;0.993;1.000;
1.000;1.000;1.000;1.000;1.000;0.990;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.6.3.-
InterPro :
IPR001757 : P-type ATPase
IPR006544 : P-type ATPase, subfamily V
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR023214 : HAD-like domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0006812 : Biological Process : cation transport
0016021 : Cellular Component : integral component of membrane
0016887 : Molecular Function : ATPase activity
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214398)
HIX0214398
HIT000423007
(
AK290210
)
(Probable cation-transporting ATPase 13A2; EC=3.6.3.-;)
genome : 17,312,627 - 17,338,423 (25,797)
query : 1 - 3,807 (3,807/3,807)
29 exons
identity = 0.999
3'(1.000;1.000;0.993;1.000;0.990;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 3.6.3.-
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR006544 : P-type ATPase, subfamily V
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR023214 : HAD-like domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0006812 : Biological Process : cation transport
0016021 : Cellular Component : integral component of membrane
0016887 : Molecular Function : ATPase activity
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214398)
HIX0000179
HIT000199869 (
NM_003000
)
(Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; EC=1.3.5.1; Iron-sulfur subunit of complex II; Ip; Precursor;)
genome : 17,345,226 - 17,380,665 (35,440)
query : 1 - 1,144 (1,144/1,161)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 1.3.5.1
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00190 : Oxidative phosphorylation (12)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, cyto 3, extr 2, nucl 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000179)
HIX0000179
HIT000356779 (
ENST00000375499
)
(Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; EC=1.3.5.1; Iron-sulfur subunit of complex II; Ip; Precursor;)
genome : 17,345,226 - 17,380,665 (35,440)
query : 1 - 1,144 (1,144/1,153)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 1.3.5.1
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00190 : Oxidative phosphorylation (12)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, cyto 3, extr 2, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000179)
HIX0000179
HIT000033484
(
BC007840
)
Representative transcript
(Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; EC=1.3.5.1; Iron-sulfur subunit of complex II; Ip; Precursor;)
genome : 17,345,265 - 17,380,665 (35,401)
query : 1 - 1,105 (1,105/1,130)
8 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.996)5'
coverage = 1.000
EC number :
EC 1.3.5.1
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00190 : Oxidative phosphorylation (12)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
InterPro :
IPR001041 : 2Fe-2S ferredoxin-type domain
IPR004489 : Succinate dehydrogenase/fumarate reductase iron-sulphur protein
IPR006058 : 2Fe-2S ferredoxin, iron-sulphur binding site
IPR009051 : Alpha-helical ferredoxin
IPR012675 : Beta-grasp domain
IPR017896 : 4Fe-4S ferredoxin-type, iron-sulphur binding domain
IPR017900 : 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
IPR025192 : Succinate dehydogenase/fumarate reductase N-terminal
GO :
0006099 : Biological Process : tricarboxylic acid cycle
0009055 : Molecular Function : electron carrier activity
0016491 : Molecular Function : oxidoreductase activity
0051536 : Molecular Function : iron-sulfur cluster binding
0051537 : Molecular Function : 2 iron, 2 sulfur cluster binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, cyto 3, extr 2, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000179)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB174579
Mus
sp. (Mouse) : BC051934
Bos
sp. (Cow) : BC102067
Danio
sp. (Zebrafish) : BC142799
Gallus
sp. (Chicken) : CR353422
Tetraodon
sp. (Tetraodon) : CR661751
Tetraodon
sp. (Tetraodon) : CR676594
Rattus
sp. (Rat) : DQ403001
Canis
sp. (Dog) : DQ403010
Equus
sp. (Horse) : DQ403012
Oryzias
sp. (Medaka) : ENSORLT00000000328
Pongo
sp. (Orangutan) : ENSPPYT00000002168
Takifugu
sp. (Fugu) : SINFRUT00000130511
Pan
sp. (Chimpanzee) : XM_001155516
Monodelphis
sp. (Opossum) : XM_001376807
Macaca
sp. (Macaque) : XR_012868
HIX0000179
HIT000218375
(
U17248
)
(Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; EC=1.3.5.1; Iron-sulfur subunit of complex II; Ip; Precursor;)
genome : 17,345,253 - 17,380,646 (35,394)
query : 2 - 1,100 (1,099/1,100)
8 exons
identity = 0.996
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.984;
0.990)5'
coverage = 0.999
EC number :
EC 1.3.5.1
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00190 : Oxidative phosphorylation (12)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
InterPro :
IPR001041 : 2Fe-2S ferredoxin-type domain
IPR004489 : Succinate dehydrogenase/fumarate reductase iron-sulphur protein
IPR006058 : 2Fe-2S ferredoxin, iron-sulphur binding site
IPR009051 : Alpha-helical ferredoxin
IPR012675 : Beta-grasp domain
IPR017896 : 4Fe-4S ferredoxin-type, iron-sulphur binding domain
IPR017900 : 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
IPR025192 : Succinate dehydogenase/fumarate reductase N-terminal
GO :
0006099 : Biological Process : tricarboxylic acid cycle
0009055 : Molecular Function : electron carrier activity
0016491 : Molecular Function : oxidoreductase activity
0051536 : Molecular Function : iron-sulfur cluster binding
0051537 : Molecular Function : 2 iron, 2 sulfur cluster binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 7, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000179)
HIX0000179
HIT000100421
(
D10245
)
(Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; EC=1.3.5.1; Iron-sulfur subunit of complex II; Ip; Precursor;)
genome : 17,345,254 - 17,371,386 (26,133)
query : 16 - 911 (896/911)
7 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.985)5'
coverage = 0.984
EC number :
EC 1.3.5.1
,
EC 1.3.99.1
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00190 : Oxidative phosphorylation (12)
00623 : Toluene degradation (23)
00650 : Butanoate metabolism (47)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR001041 : 2Fe-2S ferredoxin-type domain
IPR004489 : Succinate dehydrogenase/fumarate reductase iron-sulphur protein
IPR006058 : 2Fe-2S ferredoxin, iron-sulphur binding site
IPR009051 : Alpha-helical ferredoxin
IPR012675 : Beta-grasp domain
IPR017896 : 4Fe-4S ferredoxin-type, iron-sulphur binding domain
IPR017900 : 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
IPR025192 : Succinate dehydogenase/fumarate reductase N-terminal
GO :
0006099 : Biological Process : tricarboxylic acid cycle
0009055 : Molecular Function : electron carrier activity
0016491 : Molecular Function : oxidoreductase activity
0051536 : Molecular Function : iron-sulfur cluster binding
0051537 : Molecular Function : 2 iron, 2 sulfur cluster binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, cyto 8.5, cyto_nucl 8, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000179)
HIX0000179
HIT000195460
(
M32246
)
(Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; EC=1.3.5.1; Iron-sulfur subunit of complex II; Ip; Precursor;)
genome : 17,345,254 - 17,371,386 (26,133)
query : 16 - 911 (896/911)
7 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.985)5'
coverage = 0.984
EC number :
EC 1.3.5.1
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00190 : Oxidative phosphorylation (12)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
InterPro :
IPR001041 : 2Fe-2S ferredoxin-type domain
IPR004489 : Succinate dehydrogenase/fumarate reductase iron-sulphur protein
IPR006058 : 2Fe-2S ferredoxin, iron-sulphur binding site
IPR009051 : Alpha-helical ferredoxin
IPR012675 : Beta-grasp domain
IPR017896 : 4Fe-4S ferredoxin-type, iron-sulphur binding domain
IPR017900 : 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
IPR025192 : Succinate dehydogenase/fumarate reductase N-terminal
GO :
0006099 : Biological Process : tricarboxylic acid cycle
0009055 : Molecular Function : electron carrier activity
0016491 : Molecular Function : oxidoreductase activity
0051536 : Molecular Function : iron-sulfur cluster binding
0051537 : Molecular Function : 2 iron, 2 sulfur cluster binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, cyto 8.5, cyto_nucl 8, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000179)
HIX0000179
HIT000430922
(
AK312056
)
(Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; EC=1.3.5.1; Iron-sulfur subunit of complex II; Ip; Precursor;)
genome : 17,345,376 - 17,380,527 (35,152)
query : 1 - 856 (856/856)
8 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.988)5'
coverage = 1.000
EC number :
EC 1.3.5.1
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00190 : Oxidative phosphorylation (12)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
InterPro :
IPR001041 : 2Fe-2S ferredoxin-type domain
IPR004489 : Succinate dehydrogenase/fumarate reductase iron-sulphur protein
IPR006058 : 2Fe-2S ferredoxin, iron-sulphur binding site
IPR009051 : Alpha-helical ferredoxin
IPR012675 : Beta-grasp domain
IPR017896 : 4Fe-4S ferredoxin-type, iron-sulphur binding domain
IPR017900 : 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
IPR025192 : Succinate dehydogenase/fumarate reductase N-terminal
GO :
0006099 : Biological Process : tricarboxylic acid cycle
0009055 : Molecular Function : electron carrier activity
0016491 : Molecular Function : oxidoreductase activity
0051536 : Molecular Function : iron-sulfur cluster binding
0051537 : Molecular Function : 2 iron, 2 sulfur cluster binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, cyto 3, extr 2, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000179)
HIX0000179
HIT000391890
(
DQ403007
)
(Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; EC=1.3.5.1; Iron-sulfur subunit of complex II; Ip; Precursor;)
genome : 17,345,428 - 17,380,487 (35,060)
query : 1 - 764 (764/764)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 1.3.5.1
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00190 : Oxidative phosphorylation (12)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
InterPro :
IPR001041 : 2Fe-2S ferredoxin-type domain
IPR004489 : Succinate dehydrogenase/fumarate reductase iron-sulphur protein
IPR006058 : 2Fe-2S ferredoxin, iron-sulphur binding site
IPR009051 : Alpha-helical ferredoxin
IPR012675 : Beta-grasp domain
IPR017896 : 4Fe-4S ferredoxin-type, iron-sulphur binding domain
IPR017900 : 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
IPR025192 : Succinate dehydogenase/fumarate reductase N-terminal
GO :
0006099 : Biological Process : tricarboxylic acid cycle
0009055 : Molecular Function : electron carrier activity
0016491 : Molecular Function : oxidoreductase activity
0051536 : Molecular Function : iron-sulfur cluster binding
0051537 : Molecular Function : 2 iron, 2 sulfur cluster binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, cyto 3, extr 2, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000179)
HIX0000179
HIT000589314 (
ENST00000485515
)
(Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; EC=1.3.5.1; Iron-sulfur subunit of complex II; Ip; Precursor;)
genome : 17,349,103 - 17,380,502 (31,400)
query : 1 - 699 (699/699)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.3.5.1
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00190 : Oxidative phosphorylation (12)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 26, cyto_nucl 3, nucl 2.5, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000179)
HIX0000180
HIT000203858 (
NM_007365
)
(Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;)
genome : 17,393,256 - 17,445,948 (52,693)
query : 1 - 4,363 (4,363/4,363)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 3.5, cyto_nucl 3, pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000180)
HIX0000180
HIT000356766 (
ENST00000375486
)
(Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;)
genome : 17,393,256 - 17,445,930 (52,675)
query : 1 - 4,345 (4,345/4,345)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 3.5, cyto_nucl 3, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000180)
HIX0000180
HIT000000711
(
AB023211
)
Representative transcript
(Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;)
genome : 17,393,257 - 17,445,930 (52,674)
query : 1 - 4,343 (4,343/4,343)
16 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;0.993;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 3.5, cyto_nucl 3, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000180)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK154814
Bos
sp. (Cow) : BC149017
Danio
sp. (Zebrafish) : ENSDART00000064842
Equus
sp. (Horse) : ENSECAT00000023886
Oryzias
sp. (Medaka) : ENSORLT00000009454
Pongo
sp. (Orangutan) : ENSPPYT00000002167
Tetraodon
sp. (Tetraodon) : GSTENT00033904001
Rattus
sp. (Rat) : J05022
Takifugu
sp. (Fugu) : SINFRUT00000134773
Macaca
sp. (Macaque) : XM_001099772
Monodelphis
sp. (Opossum) : XM_001376787
Gallus
sp. (Chicken) : XM_425730
Pan
sp. (Chimpanzee) : XM_513113
Canis
sp. (Dog) : XM_544539
HIX0000180
HIT000046879
(
AK127006
)
(Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;)
genome : 17,394,281 - 17,409,921 (15,641)
query : 1 - 3,612 (3,612/3,612)
7 exons
identity = 0.997
3'(0.999;0.992;1.000;0.998;1.000;0.995;0.984)5'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR013530 : Protein-arginine deiminase, C-terminal
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12, nucl 10.5, extr 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000180)
HIX0000180
HIT000570816 (
ENST00000466151
)
(Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;)
genome : 17,394,281 - 17,409,921 (15,641)
query : 1 - 3,612 (3,612/3,612)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12, nucl 10.5, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000180)
HIX0000180
HIT000490407
(
AK295783
)
(Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;)
genome : 17,394,938 - 17,445,948 (51,011)
query : 1 - 2,333 (2,333/2,333)
13 exons
identity = 0.997
3'(0.998;0.992;1.000;1.000;0.993;0.993;1.000;
0.991;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR008972 : Cupredoxin
IPR013530 : Protein-arginine deiminase, C-terminal
IPR013732 : Protein-arginine deiminase (PAD) N-terminal
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, nucl 11.5, cyto_nucl 9, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000180)
HIX0000180
HIT000542819 (
ENST00000444885
)
(Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;)
genome : 17,394,938 - 17,445,948 (51,011)
query : 1 - 2,333 (2,333/2,333)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.3.15
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, nucl 11.5, cyto_nucl 9, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000180)
HIX0000180
HIT000058986
(
AB030176
)
(Protein-arginine deiminase type-2; EC=3.5.3.15; PAD-H19; Peptidylarginine deiminase II; Protein-arginine deiminase type II;)
genome : 17,395,253 - 17,445,930 (50,678)
query : 1 - 2,348 (2,348/2,348)
16 exons
identity = 0.999
3'(0.998;0.992;1.000;1.000;0.993;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.3.15
InterPro :
IPR004303 : Protein-arginine deiminase
IPR008972 : Cupredoxin
IPR013530 : Protein-arginine deiminase, C-terminal
IPR013732 : Protein-arginine deiminase (PAD) N-terminal
IPR013733 : Protein-arginine deiminase (PAD), central domain
GO :
0004668 : Molecular Function : protein-arginine deiminase activity
0005509 : Molecular Function : calcium ion binding
0005737 : Cellular Component : cytoplasm
0006464 : Biological Process : cellular protein modification process
0018101 : Biological Process : protein citrullination
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 3.5, cyto_nucl 3, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000180)
HIX0000183
HIT000206958 (
NM_018125
)
(Dbl homology (DH) domain containing protein.)
genome : 17,866,330 - 18,024,370 (158,041)
query : 1 - 4,494 (4,494/4,502)
28 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.938;0.995;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.993;1.000;1.000;1.000)3'
coverage = 0.998
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 17, cyto 13
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
HIX0000183
HIT000550456 (
ENST00000452522
)
(Dbl homology (DH) domain containing protein.)
genome : 17,866,330 - 18,024,369 (158,040)
query : 1 - 4,376 (4,376/4,376)
27 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.938;0.995;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 15.5, cyto 13.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
HIX0000183
HIT000314490 (
ENST00000361221
)
(Dbl homology (DH) domain containing protein.)
genome : 17,866,330 - 18,024,364 (158,035)
query : 1 - 4,488 (4,488/4,488)
28 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.938;0.995;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 17, cyto 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
HIX0000183
HIT000001341
(
AB046846
)
Representative transcript
(Rho guanine nucleotide exchange factor 10-like protein; GrinchGEF;)
genome : 17,866,330 - 18,024,363 (158,034)
query : 1 - 4,489 (4,489/4,489)
28 exons
identity = 0.996
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.938;0.989;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.993;1.000;1.000;0.995)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 17, cyto 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
HIX0000183
HIT000316841 (
NM_001011722
)
(Dbl homology (DH) domain containing protein.)
genome : 17,907,048 - 18,024,370 (117,323)
query : 1 - 4,261 (4,261/4,269)
26 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.938;
0.995;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.993;1.000;1.000;1.000)3'
coverage = 0.998
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 15.5, cyto 13.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
HIX0000183
HIT000356695 (
ENST00000375415
)
(Dbl homology (DH) domain containing protein.)
genome : 17,907,048 - 18,024,144 (117,097)
query : 1 - 4,035 (4,035/4,035)
26 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.938;
0.995;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 15.5, cyto 13.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
HIX0000183
HIT000387461
(
BC117171
)
(Dbl homology (DH) domain containing protein.)
genome : 17,907,058 - 18,023,969 (116,912)
query : 1 - 3,850 (3,850/3,850)
26 exons
identity = 0.996
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.938;
0.995;1.000;1.000;1.000;1.000;0.989;1.000;
1.000;0.993;1.000;1.000;0.995)3'
coverage = 1.000
InterPro :
IPR000219 : Dbl homology (DH) domain
IPR017986 : WD40-repeat-containing domain
GO :
0005089 : Molecular Function : Rho guanyl-nucleotide exchange factor activity
0005515 : Molecular Function : protein binding
0035023 : Biological Process : regulation of Rho protein signal transduction
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 15.5, cyto 13.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
HIX0000183
HIT000501805
(
BC143347
)
(Dbl homology (DH) domain containing protein.)
genome : 17,907,058 - 18,023,969 (116,912)
query : 1 - 3,850 (3,850/3,850)
26 exons
identity = 0.996
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.938;
0.995;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.993;1.000;1.000;0.995)3'
coverage = 1.000
InterPro :
IPR000219 : Dbl homology (DH) domain
IPR017986 : WD40-repeat-containing domain
GO :
0005089 : Molecular Function : Rho guanyl-nucleotide exchange factor activity
0005515 : Molecular Function : protein binding
0035023 : Biological Process : regulation of Rho protein signal transduction
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 15.5, cyto 13.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
HIX0000183
HIT000341936
(
DQ139833
)
(Dbl homology (DH) domain containing protein.)
genome : 17,907,091 - 18,024,363 (117,273)
query : 1 - 4,198 (4,198/4,198)
26 exons
identity = 0.998
5'(1.000;0.995;1.000;1.000;1.000;0.994;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.993;1.000;1.000;0.995)3'
coverage = 1.000
InterPro :
IPR000219 : Dbl homology (DH) domain
IPR017986 : WD40-repeat-containing domain
GO :
0005089 : Molecular Function : Rho guanyl-nucleotide exchange factor activity
0005515 : Molecular Function : protein binding
0035023 : Biological Process : regulation of Rho protein signal transduction
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 18, cyto_nucl 16, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
HIX0000183
HIT000046750
(
AK126877
)
(Rho guanine nucleotide exchange factor 10-like protein isoform 1.)
genome : 17,941,583 - 18,024,355 (82,773)
query : 1 - 4,586 (4,586/4,586)
20 exons
identity = 0.998
5'(0.998;1.000;1.000;1.000;0.991;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.993;1.000;1.000;0.996)3'
coverage = 1.000
InterPro :
IPR000219 : Dbl homology (DH) domain
IPR017986 : WD40-repeat-containing domain
GO :
0005089 : Molecular Function : Rho guanyl-nucleotide exchange factor activity
0005515 : Molecular Function : protein binding
0035023 : Biological Process : regulation of Rho protein signal transduction
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 19, cyto_nucl 16.5, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
HIX0000183
HIT000574235 (
ENST00000469726
)
(Dbl homology (DH) domain containing protein.)
genome : 17,941,583 - 18,024,355 (82,773)
query : 1 - 4,585 (4,585/4,585)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 18, cyto_nucl 16.5, cyto 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
HIX0000183
HIT000016887
(
AK092020
)
(Rho guanine nucleotide exchange factor 10-like protein isoform 2.)
genome : 17,944,811 - 18,024,363 (79,553)
query : 1 - 3,476 (3,476/3,476)
18 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.994;
0.993;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR000219 : Dbl homology (DH) domain
GO :
0005089 : Molecular Function : Rho guanyl-nucleotide exchange factor activity
0035023 : Biological Process : regulation of Rho protein signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, nucl 9, cyto 9, cyto_nucl 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
HIX0000183
HIT000356688 (
ENST00000375408
)
(Dbl homology (DH) domain containing protein.)
genome : 17,944,811 - 18,024,363 (79,553)
query : 1 - 3,685 (3,685/3,685)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 12.5, mito 8, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
HIX0000183
HIT000494888
(
AK300264
)
(Rho guanine nucleotide exchange factor 10-like protein isoform 2.)
genome : 17,944,845 - 18,024,369 (79,525)
query : 1 - 3,232 (3,232/3,232)
21 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.994;0.993;1.000;1.000;0.994;1.000)3'
coverage = 1.000
InterPro :
IPR000219 : Dbl homology (DH) domain
IPR017986 : WD40-repeat-containing domain
GO :
0005089 : Molecular Function : Rho guanyl-nucleotide exchange factor activity
0005515 : Molecular Function : protein binding
0035023 : Biological Process : regulation of Rho protein signal transduction
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 13, mito 7, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
HIX0000183
HIT000102502 (
ENST00000167825
)
(Dbl homology (DH) domain containing protein.)
genome : 17,944,849 - 18,024,369 (79,521)
query : 1 - 3,443 (3,443/3,443)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 12, mito 12, mito_nucl 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
HIX0000183
HIT000339872
(
BC111058
)
(Rho guanine nucleotide exchange factor 10-like protein isoform 2.)
genome : 17,945,153 - 18,024,364 (79,212)
query : 1 - 4,921 (4,921/4,973)
22 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.989;0.996;1.000;0.993;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR000219 : Dbl homology (DH) domain
GO :
0005089 : Molecular Function : Rho guanyl-nucleotide exchange factor activity
0035023 : Biological Process : regulation of Rho protein signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 14.5, cyto 9, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
HIX0000183
HIT000265862
(
BC080596
)
(Dbl homology (DH) domain containing protein.)
genome : 17,949,649 - 18,024,024 (74,376)
query : 1 - 2,812 (2,812/2,891)
17 exons
identity = 0.994
5'(1.000;1.000;1.000;1.000;0.938;0.995;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.993;
1.000;1.000;0.994)3'
coverage = 1.000
InterPro :
IPR000219 : Dbl homology (DH) domain
IPR017986 : WD40-repeat-containing domain
GO :
0005089 : Molecular Function : Rho guanyl-nucleotide exchange factor activity
0005515 : Molecular Function : protein binding
0035023 : Biological Process : regulation of Rho protein signal transduction
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 15.5, nucl 14, cyto 13, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
HIX0000183
HIT000261967
(
BC065561
)
(Dbl homology (DH) domain containing protein.)
genome : 17,952,458 - 18,024,364 (71,907)
query : 1 - 2,991 (2,991/3,009)
15 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.993;1.000;1.000;
0.996)3'
coverage = 1.000
InterPro :
IPR000219 : Dbl homology (DH) domain
IPR017986 : WD40-repeat-containing domain
GO :
0005089 : Molecular Function : Rho guanyl-nucleotide exchange factor activity
0005515 : Molecular Function : protein binding
0035023 : Biological Process : regulation of Rho protein signal transduction
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 15, cyto_nucl 7.33333, nucl 6.5, cyto 5,
cyto_pero 5, pero 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
HIX0000183
HIT000003857
(
AK001383
)
(Conserved hypothetical protein.)
genome : 17,952,502 - 18,024,363 (71,862)
query : 1 - 3,019 (3,019/3,019)
16 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;0.991;1.000;1.000;
1.000;1.000;1.000;0.994;0.993;0.994;1.000;
1.000;0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10.5, mito 9, cyto_nucl 8.5, cyto 5.5,
mito_pero 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
HIX0000183
HIT000579602 (
ENST00000475356
)
(Dbl homology (DH) domain containing protein.)
genome : 17,952,502 - 18,024,363 (71,862)
query : 1 - 3,018 (3,018/3,018)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 9.5, mito 9, cyto_nucl 8, cyto 5.5, extr 4,
pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
HIX0000183
HIT000031406
(
BC003073
)
(WD40-repeat-containing domain containing protein.)
genome : 17,990,996 - 18,024,364 (33,369)
query : 1 - 1,396 (1,396/1,434)
4 exons
identity = 0.997
5'(1.000;1.000;1.000;0.996)3'
coverage = 1.000
InterPro :
IPR017986 : WD40-repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 18, cyto_nucl 7, nucl 6, cyto 4, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000183)
AL451042.10
16500001-16522358 F +
NCBI
AL109627.18
16522359-16641184 F -
NCBI
AL358794.19
16641185-16766133 F +
NCBI
AL669962.4
16766134-16773050 F +
NCBI
AL137802.7
16773051-16859226 F +
NCBI
AL355149.13
16859227-16894615 F +
NCBI
AL137798.8
16894616-17007591 F -
NCBI
AL021920.1
17007592-17125658 F +
NCBI
50000
17125659-17175658 N
BX284668.4
17175659-17267484 F +
NCBI
AL049569.13
17267485-17483981 F -
NCBI
AL590644.14
17483982-17646843 F +
NCBI
AL138798.10
17646844-17653308 F +
NCBI
AC004824.3
17653309-17786815 F -
NCBI
AL390994.30
17786816-17901951 F +
NCBI
AL139250.6
17901952-17913442 F +
NCBI
AL358593.22
17913443-18053896 F +
NCBI
AL136529.14
18053897-18100000 F +
NCBI