bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0214304
HIT000693246 (
ENST00000581340
)
(Non-protein coding transcript.)
genome : 195,095,811 - 195,095,906 (96)
query : 1 - 96 (96/96)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214304)
HIX0020284
HIT000009659
(
AK026385
)
Representative transcript
(Conserved hypothetical protein.)
genome : 195,614,666 - 195,615,787 (1,122)
query : 1 - 1,122 (1,122/1,148)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020284)
HIX0029311
HIT000096456
(
BC040921
)
Representative transcript
(Conserved hypothetical protein.)
genome : 195,727,481 - 195,732,530 (5,050)
query : 1 - 1,402 (1,402/1,479)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 9, nucl 3, mito 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029311)
HIX0178305
HIT000528453 (
ENST00000430519
)
(Hypothetical short protein.)
genome : 196,014,126 - 196,030,203 (16,078)
query : 1 - 621 (621/621)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0178305)
HIX0023602
HIT000056499
(
BX647852
)
(Potassium channel subfamily T member 2; Sequence like an intermediate conductance potassium channel subunit; Sodium and chloride-activated ATP-sensitive potassium channel Slo2.1;)
genome : 196,194,913 - 196,577,541 (382,629)
query : 2 - 5,882 (5,881/5,912)
27 exons
identity = 0.999
3'(0.999;1.000;0.997;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.994;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR003929 : Potassium channel, calcium-activated, BK, alpha subunit
IPR013099 : Two pore domain potassium channel domain
IPR016040 : NAD(P)-binding domain
GO :
0006813 : Biological Process : potassium ion transport
0015269 : Molecular Function : calcium-activated potassium channel activity
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023602)
HIX0023602
HIT000348713 (
ENST00000367433
)
(Potassium channel subfamily T member 2; Sequence like an intermediate conductance potassium channel subunit; Sodium and chloride-activated ATP-sensitive potassium channel Slo2.1;)
genome : 196,194,909 - 196,577,541 (382,633)
query : 1 - 5,883 (5,883/5,883)
27 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023602)
HIX0023602
HIT000348711 (
ENST00000367431
)
(Potassium channel subfamily T member 2.)
genome : 196,194,913 - 196,577,541 (382,629)
query : 1 - 5,753 (5,753/5,753)
27 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023602)
HIX0023602
HIT000319380 (
NM_198503
)
(Potassium channel subfamily T member 2; Sequence like an intermediate conductance potassium channel subunit; Sodium and chloride-activated ATP-sensitive potassium channel Slo2.1;)
genome : 196,194,913 - 196,577,499 (382,587)
query : 1 - 5,909 (5,909/5,909)
28 exons
identity = 1.000
3'(1.000;1.000;0.997;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023602)
HIX0023602
HIT000047680
(
AK127807
)
(Potassium channel subfamily T member 2.)
genome : 196,194,913 - 196,434,517 (239,605)
query : 16 - 5,172 (5,157/5,172)
20 exons
identity = 0.999
3'(0.999;1.000;0.997;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.997
InterPro :
IPR003929 : Potassium channel, calcium-activated, BK, alpha subunit
IPR013099 : Two pore domain potassium channel domain
IPR016040 : NAD(P)-binding domain
GO :
0006813 : Biological Process : potassium ion transport
0015269 : Molecular Function : calcium-activated potassium channel activity
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023602)
HIX0023602
HIT000601649 (
ENST00000498426
)
(Potassium channel subfamily T member 2.)
genome : 196,194,913 - 196,434,517 (239,605)
query : 1 - 5,157 (5,157/5,157)
20 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, E.R. 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023602)
HIX0023602
HIT000337499
(
BC103947
)
(Potassium channel subfamily T member 2.)
genome : 196,196,989 - 196,577,489 (380,501)
query : 1 - 3,146 (3,146/3,146)
24 exons
identity = 1.000
3'(1.000;1.000;0.997;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003929 : Potassium channel, calcium-activated, BK, alpha subunit
GO :
0006813 : Biological Process : potassium ion transport
0015269 : Molecular Function : calcium-activated potassium channel activity
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 15, cyto 10.5, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023602)
HIX0023602
HIT000337500
(
BC103948
)
(Potassium channel subfamily T member 2; Sequence like an intermediate conductance potassium channel subunit; Sodium and chloride-activated ATP-sensitive potassium channel Slo2.1;)
genome : 196,196,989 - 196,577,489 (380,501)
query : 1 - 3,751 (3,751/3,751)
27 exons
identity = 1.000
3'(1.000;1.000;0.997;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003929 : Potassium channel, calcium-activated, BK, alpha subunit
IPR013099 : Two pore domain potassium channel domain
IPR016040 : NAD(P)-binding domain
GO :
0006813 : Biological Process : potassium ion transport
0015269 : Molecular Function : calcium-activated potassium channel activity
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023602)
HIX0023602
HIT000337501
(
BC103949
)
(Potassium channel subfamily T member 2.)
genome : 196,196,989 - 196,577,489 (380,501)
query : 1 - 3,622 (3,622/3,622)
27 exons
identity = 1.000
3'(1.000;1.000;0.997;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003929 : Potassium channel, calcium-activated, BK, alpha subunit
IPR013099 : Two pore domain potassium channel domain
IPR016040 : NAD(P)-binding domain
GO :
0006813 : Biological Process : potassium ion transport
0015269 : Molecular Function : calcium-activated potassium channel activity
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023602)
HIX0023602
HIT000337502
(
BC103950
)
(Potassium channel subfamily T member 2; Sequence like an intermediate conductance potassium channel subunit; Sodium and chloride-activated ATP-sensitive potassium channel Slo2.1;)
genome : 196,196,989 - 196,577,489 (380,501)
query : 1 - 3,751 (3,751/3,751)
27 exons
identity = 1.000
3'(1.000;1.000;0.997;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003929 : Potassium channel, calcium-activated, BK, alpha subunit
IPR013099 : Two pore domain potassium channel domain
IPR016040 : NAD(P)-binding domain
GO :
0006813 : Biological Process : potassium ion transport
0015269 : Molecular Function : calcium-activated potassium channel activity
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023602)
HIX0023602
HIT000549258 (
ENST00000451324
)
(Potassium channel subfamily T member 2.)
genome : 196,196,989 - 196,577,489 (380,501)
query : 1 - 3,146 (3,146/3,146)
24 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 15, cyto 10.5, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023602)
HIX0023602
HIT000113940 (
ENST00000294725
)
(Potassium channel subfamily T member 2; Sequence like an intermediate conductance potassium channel subunit; Sodium and chloride-activated ATP-sensitive potassium channel Slo2.1;)
genome : 196,197,269 - 196,577,499 (380,231)
query : 1 - 3,553 (3,553/3,553)
28 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023602)
HIX0023602
HIT000253174
(
AY359444
)
Representative transcript
(Potassium channel subfamily T member 2; Sequence like an intermediate conductance potassium channel subunit; Sodium and chloride-activated ATP-sensitive potassium channel Slo2.1;)
genome : 196,197,269 - 196,577,499 (380,231)
query : 1 - 3,553 (3,553/3,553)
28 exons
identity = 1.000
3'(1.000;1.000;0.997;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003929 : Potassium channel, calcium-activated, BK, alpha subunit
IPR013099 : Two pore domain potassium channel domain
IPR016040 : NAD(P)-binding domain
GO :
0006813 : Biological Process : potassium ion transport
0015269 : Molecular Function : calcium-activated potassium channel activity
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023602)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK054538
Rattus
sp. (Rat) : AY359443
Gallus
sp. (Chicken) : CR386236
Bos
sp. (Cow) : ENSBTAT00000048534
Canis
sp. (Dog) : ENSCAFT00000016600
Oryzias
sp. (Medaka) : ENSORLT00000006641
Pongo
sp. (Orangutan) : ENSPPYT00000000464
Tetraodon
sp. (Tetraodon) : GSTENT00019770001
Takifugu
sp. (Fugu) : SINFRUT00000134428
Takifugu
sp. (Fugu) : SINFRUT00000168818
Macaca
sp. (Macaque) : XM_001112169
Pan
sp. (Chimpanzee) : XM_001134868
Monodelphis
sp. (Opossum) : XM_001376989
Equus
sp. (Horse) : XM_001491447
Danio
sp. (Zebrafish) : XM_001918936
Danio
sp. (Zebrafish) : XM_001920597
Danio
sp. (Zebrafish) : XM_687029
HIX0023602
HIT000484769
(
EU251076
)
(Potassium channel subfamily T member 2; Sequence like an intermediate conductance potassium channel subunit; Sodium and chloride-activated ATP-sensitive potassium channel Slo2.1;)
genome : 196,197,293 - 196,577,439 (380,147)
query : 1 - 3,468 (3,468/3,468)
28 exons
identity = 0.999
3'(0.994;1.000;0.997;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.996;1.000;
1.000;0.991;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003929 : Potassium channel, calcium-activated, BK, alpha subunit
IPR013099 : Two pore domain potassium channel domain
IPR016040 : NAD(P)-binding domain
GO :
0006813 : Biological Process : potassium ion transport
0015269 : Molecular Function : calcium-activated potassium channel activity
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023602)
HIX0023602
HIT000249786
(
AK131498
)
(Potassium channel subfamily T member 2.)
genome : 196,227,219 - 196,577,690 (350,472)
query : 1 - 3,462 (3,462/3,462)
25 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003929 : Potassium channel, calcium-activated, BK, alpha subunit
IPR013099 : Two pore domain potassium channel domain
IPR016040 : NAD(P)-binding domain
GO :
0006813 : Biological Process : potassium ion transport
0015269 : Molecular Function : calcium-activated potassium channel activity
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023602)
HIX0023602
HIT000428595
(
AK309729
)
(Potassium channel subfamily T member 2.)
genome : 196,249,674 - 196,577,550 (327,877)
query : 1 - 3,265 (3,265/3,265)
24 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.983;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003929 : Potassium channel, calcium-activated, BK, alpha subunit
IPR013099 : Two pore domain potassium channel domain
IPR016040 : NAD(P)-binding domain
GO :
0006813 : Biological Process : potassium ion transport
0015269 : Molecular Function : calcium-activated potassium channel activity
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023602)
HIX0023602
HIT000004958
(
AK021684
)
(Hypothetical short protein.)
genome : 196,287,139 - 196,288,933 (1,795)
query : 1 - 1,796 (1,796/1,796)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, mito 11, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023602)
HIX0023602
HIT000571542 (
ENST00000466914
)
(Potassium channel subfamily T member 2.)
genome : 196,309,465 - 196,397,337 (87,873)
query : 1 - 958 (958/958)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023602)
HIX0019120
HIT000024512
(
AL110248
)
Representative transcript
(Conserved hypothetical protein.)
genome : 196,492,117 - 196,494,377 (2,261)
query : 2 - 2,263 (2,262/2,273)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 7, mito 4.5, nucl 3, E.R._mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019120)
HIX0029021
HIT000070703
(
AF130107
)
Representative transcript
(Conserved hypothetical protein.)
genome : 196,537,925 - 196,540,170 (2,246)
query : 1 - 2,229 (2,229/2,243)
1 exon
identity = 0.992
3'(0.992)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 10.5, cyto_mito 7, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029021)
HIX0214057
HIT000691948 (
ENST00000580028
)
(Non-protein coding transcript.)
genome : 196,551,543 - 196,551,611 (69)
query : 1 - 69 (69/69)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214057)
HIX0214057
HIT000725951 (
NR_039888
)
(Non-protein coding transcript.)
genome : 196,551,543 - 196,551,611 (69)
query : 1 - 69 (69/69)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214057)
AL357932.15
195000001-195111082 F +
NCBI
AL161738.15
195111083-195257926 F +
NCBI
AL138926.13
195257927-195425088 F +
NCBI
AL358119.12
195425089-195580212 F +
NCBI
AL162398.34
195580213-195611144 F +
NCBI
AL353709.15
195611145-195742562 F +
NCBI
AL592308.3
195742563-195909145 F +
NCBI
AL645754.10
195909146-195924132 F +
NCBI
AL592144.5
195924133-196119454 F +
NCBI
AL139137.15
196119455-196255546 F +
NCBI
AL138931.13
196255547-196351227 F +
NCBI
AL358853.22
196351228-196409276 F +
NCBI
AL591604.6
196409277-196592836 F +
NCBI
AL049744.8
196592837-196600000 F -
NCBI