bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0028764
HIT000554867 (
ENST00000456933
)
(Hypothetical protein.)
genome : 95,975,723 - 96,247,898 (272,176)
query : 1 - 714 (714/714)
4 exons
identity = 0.997
5'(1.000;0.996;0.994)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 8, extr_plas 8, nucl 7, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028764)
HIX0028764
HIT000530080 (
ENST00000432146
)
(Hypothetical short protein.)
genome : 95,975,726 - 96,088,290 (112,565)
query : 1 - 319 (319/319)
2 exons
identity = 0.981
5'(0.968)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 7, nucl 3, mito 3, mito_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028764)
HIX0029205
HIT000091674
(
BC028967
)
Representative transcript
(Conserved hypothetical protein.)
genome : 96,258,088 - 96,259,074 (987)
query : 1 - 988 (988/1,127)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 13, nucl 9, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029205)
HIX0159773
HIT000540492 (
ENST00000442558
)
(Conserved hypothetical protein.)
genome : 96,403,457 - 96,488,422 (84,966)
query : 1 - 479 (479/479)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, nucl 11.5, cyto_nucl 11.5, cyto 6.5,
extr_plas 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159773)
HIX0159773
HIT000510447 (
ENST00000412513
)
(Conserved hypothetical protein.)
genome : 96,455,363 - 96,488,422 (33,060)
query : 1 - 861 (861/861)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 2.5, cyto_nucl 2.5, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159773)
HIX0159773
HIT000705764 (
ENST00000593954
)
(Conserved hypothetical protein.)
genome : 96,457,542 - 96,488,337 (30,796)
query : 1 - 683 (683/683)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 10.5, cyto_nucl 8, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159773)
HIX0159773
HIT000511759 (
ENST00000413825
)
(Conserved hypothetical protein.)
genome : 96,457,545 - 96,488,436 (30,892)
query : 1 - 943 (943/943)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159773)
HIX0159773
HIT000707404 (
ENST00000595613
)
(Conserved hypothetical protein.)
genome : 96,457,582 - 96,488,335 (30,754)
query : 1 - 670 (670/670)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 12.5, cyto_nucl 7.5, extr_plas 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159773)
HIX0159773
HIT000706985 (
ENST00000595188
)
(Conserved hypothetical protein.)
genome : 96,457,588 - 96,471,821 (14,234)
query : 1 - 737 (737/737)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159773)
HIX0159773
HIT000549609 (
ENST00000451675
)
(Conserved hypothetical protein.)
genome : 96,457,624 - 96,488,422 (30,799)
query : 1 - 799 (799/799)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159773)
HIX0159773
HIT000709900 (
ENST00000598129
)
(Conserved hypothetical protein.)
genome : 96,457,997 - 96,488,335 (30,339)
query : 1 - 718 (718/718)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159773)
HIX0159773
HIT000710377 (
ENST00000598612
)
(Conserved hypothetical protein.)
genome : 96,460,791 - 96,488,337 (27,547)
query : 1 - 709 (709/709)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto_nucl 5.16667, cyto 5, cyto_pero 4.16667,
nucl 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159773)
HIX0021392
HIT000012663
(
AK056049
)
Representative transcript
(Conserved hypothetical protein.)
genome : 96,719,625 - 96,839,681 (120,057)
query : 1 - 1,994 (1,994/1,994)
6 exons
identity = 0.997
3'(0.998;0.975;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto_nucl 5, nucl 3, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021392)
HIX0021392
HIT000533245 (
ENST00000435311
)
(Conserved hypothetical protein.)
genome : 96,719,625 - 96,839,681 (120,057)
query : 1 - 1,994 (1,994/1,994)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, extr 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021392)
HIX0161038
HIT000537559 (
ENST00000439625
)
(Conserved hypothetical protein.)
genome : 96,856,208 - 96,856,949 (742)
query : 1 - 742 (742/742)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 16, cyto_plas 12.3333, nucl 5.5,
mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161038)
HIX0160036
HIT000315278 (
ENST00000362030
)
(Ubiquitin-conjugating enzyme E2 domain containing protein.)
genome : 96,884,150 - 96,884,489 (340)
query : 1 - 340 (340/340)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, nucl 13.5, cyto_nucl 10, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160036)
HIX0159754
HIT000513212 (
ENST00000415278
)
(Translation elongation factor EFTu/EF1A, domain 2 containing protein.)
genome : 96,912,486 - 96,913,874 (1,389)
query : 1 - 1,389 (1,389/1,389)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_nucl 16, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159754)
HIX0159754
HIT000711264_01 (
ENST00000599509
)
(Translation elongation factor EF1A, eukaryotic/archaeal family protein.)
genome : 96,912,486 - 96,913,874 (1,389)
query : 1 - 1,389 (1,389/1,389)
1 exon
identity = 0.963
5'(0.963)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25.5, cyto_nucl 14, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159754)
HIX0159754
HIT000452629_10
(
DQ586098
)
Representative transcript
(Non-protein coding transcript.)
genome : 96,912,836 - 96,912,866 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159754)
HIX0214029
HIT000710694 (
ENST00000598931
)
(NADH:ubiquinone oxidoreductase, iron-sulphur subunit 5 family protein.)
genome : 97,049,973 - 97,050,290 (318)
query : 1 - 318 (318/318)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 9, cyto_nucl 8, nucl 5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214029)
HIX0214029
HIT000587871 (
ENST00000484004
)
(NADH:ubiquinone oxidoreductase, iron-sulphur subunit 5 family protein.)
genome : 97,049,978 - 97,050,283 (306)
query : 1 - 306 (306/306)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, extr 13, cyto_nucl 9.16667, cyto_plas 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214029)
HIX0203428
HIT000705479_01 (
ENST00000593668
)
(Ribosomal protein L7, eukaryotic family protein.)
genome : 97,144,367 - 97,145,179 (813)
query : 1 - 813 (813/813)
1 exon
identity = 0.984
3'(0.984)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203428)
HIX0203428
HIT000547324_02 (
ENST00000449390
)
(Ribosomal protein L7, eukaryotic family protein.)
genome : 97,144,430 - 97,145,188 (759)
query : 43 - 795 (753/795)
1 exon
identity = 0.960
3'(0.960)5'
coverage = 0.947
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 15, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203428)
HIX0203428
HIT000573268_01 (
ENST00000468715
)
(Ribosomal protein L7, eukaryotic family protein.)
genome : 97,144,430 - 97,145,176 (747)
query : 1 - 747 (747/747)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203428)
HIX0203428
HIT000584891_01 (
ENST00000480903
)
(Ribosomal protein L7, eukaryotic family protein.)
genome : 97,144,433 - 97,145,176 (744)
query : 1 - 738 (738/738)
1 exon
identity = 0.961
3'(0.961)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23.5, cyto_nucl 12.5, mito 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203428)
HIX0203428
HIT000600579_01 (
ENST00000497299
)
(Ribosomal protein L7, eukaryotic family protein.)
genome : 97,144,434 - 97,144,989 (556)
query : 1 - 556 (556/556)
1 exon
identity = 0.969
3'(0.969)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16.5, mito_nucl 10.5, cyto 8, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203428)
HIX0160210
HIT000509237 (
ENST00000411297
)
(Hypothetical short protein.)
genome : 97,161,412 - 97,161,723 (312)
query : 1 - 312 (312/312)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 11, nucl 6, extr_plas 6, cyto_mito 6,
cyto_golg 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160210)
HIX0000801
HIT000208297 (
NM_021190
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,187,175 - 97,280,605 (93,431)
query : 1 - 3,486 (3,486/3,498)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 16, nucl 9.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000017083
(
AK092216
)
(Polypyrimidine tract-binding protein 1 isoform b.)
genome : 97,187,221 - 97,279,267 (92,047)
query : 1 - 2,022 (2,022/2,022)
13 exons
identity = 0.995
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.971;0.989;1.000;1.000;0.979)3'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR006536 : HnRNP-L/PTB/hephaestus splicing factor
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0003723 : Molecular Function : RNA binding
0005634 : Cellular Component : nucleus
0006397 : Biological Process : mRNA processing
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 13, nucl 4, cysk 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000586198 (
ENST00000482253
)
(Polypyrimidine tract-binding protein 1 isoform b.)
genome : 97,187,221 - 97,279,267 (92,047)
query : 1 - 2,029 (2,029/2,029)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 13, nucl 4, cysk 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000059585
(
AB051232
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,187,339 - 97,280,347 (93,009)
query : 1 - 3,060 (3,060/3,091)
14 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.989;1.000;1.000;0.994)3'
coverage = 0.999
InterPro :
IPR000504 : RNA recognition motif domain
IPR006536 : HnRNP-L/PTB/hephaestus splicing factor
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0003723 : Molecular Function : RNA binding
0005634 : Cellular Component : nucleus
0006397 : Biological Process : mRNA processing
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 16, nucl 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000104692 (
ENST00000236228
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,187,339 - 97,280,349 (93,011)
query : 1 - 3,069 (3,069/3,069)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 16, nucl 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000494379
(
AK299755
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,187,340 - 97,278,981 (91,642)
query : 1 - 1,488 (1,488/1,488)
13 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.992;1.000;1.000;
1.000;1.000;0.989;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR006536 : HnRNP-L/PTB/hephaestus splicing factor
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0003723 : Molecular Function : RNA binding
0005634 : Cellular Component : nucleus
0006397 : Biological Process : mRNA processing
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 14.5, nucl 10.5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000494546
(
AK299922
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,187,347 - 97,278,997 (91,651)
query : 1 - 1,733 (1,733/1,733)
14 exons
identity = 0.999
5'(1.000;1.000;1.000;0.994;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR006536 : HnRNP-L/PTB/hephaestus splicing factor
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0003723 : Molecular Function : RNA binding
0005634 : Cellular Component : nucleus
0006397 : Biological Process : mRNA processing
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 11.5, nucl 7.5, E.R._mito 4,
mito 3.5, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000565622 (
ENST00000460706
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,187,348 - 97,237,031 (49,684)
query : 1 - 1,129 (1,129/1,129)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18.5, mito_pero 11.5, extr 5, cyto 3.5, pero 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000329201
(
AB209266
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,187,355 - 97,239,518 (52,164)
query : 1 - 3,606 (3,606/3,606)
5 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;0.996)3'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15.5, mito_pero 10, extr 8, cyto 3.5, pero 3.5,
cyto_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000081299
(
AF530580
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,187,366 - 97,280,347 (92,982)
query : 1 - 3,055 (3,055/3,071)
14 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.989;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR006536 : HnRNP-L/PTB/hephaestus splicing factor
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0003723 : Molecular Function : RNA binding
0005634 : Cellular Component : nucleus
0006397 : Biological Process : mRNA processing
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 16, nucl 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000081300
(
AF530581
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,187,366 - 97,280,347 (92,982)
query : 1 - 3,052 (3,052/3,068)
14 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.989;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR006536 : HnRNP-L/PTB/hephaestus splicing factor
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0003723 : Molecular Function : RNA binding
0005634 : Cellular Component : nucleus
0006397 : Biological Process : mRNA processing
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 16, nucl 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000351477 (
ENST00000370197
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,187,366 - 97,280,349 (92,984)
query : 1 - 3,057 (3,057/3,057)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 16, nucl 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000351478 (
ENST00000370198
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,187,366 - 97,280,349 (92,984)
query : 1 - 3,054 (3,054/3,054)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 16, nucl 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000072644
(
AF176085
)
Representative transcript
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,187,378 - 97,280,347 (92,970)
query : 10 - 3,037 (3,028/3,054)
14 exons
identity = 0.999
5'(1.000;0.968;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 0.997
InterPro :
IPR000504 : RNA recognition motif domain
IPR006536 : HnRNP-L/PTB/hephaestus splicing factor
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0003723 : Molecular Function : RNA binding
0005634 : Cellular Component : nucleus
0006397 : Biological Process : mRNA processing
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 16, nucl 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB170513
Rattus
sp. (Rat) : AJ010585
Mus
sp. (Mouse) : AK137348
Danio
sp. (Zebrafish) : BC090482
Danio
sp. (Zebrafish) : BC091854
Bos
sp. (Cow) : BC149775
Gallus
sp. (Chicken) : BX934564
Oryzias
sp. (Medaka) : ENSORLT00000017004
Pongo
sp. (Orangutan) : ENSPPYT00000001356
Danio
sp. (Zebrafish) : NM_001100007
Takifugu
sp. (Fugu) : SINFRUT00000166558
Pan
sp. (Chimpanzee) : XM_001157775
Monodelphis
sp. (Opossum) : XM_001381797
Equus
sp. (Horse) : XM_001490106
Canis
sp. (Dog) : XM_547270
HIX0000801
HIT000524332 (
ENST00000426398
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,187,378 - 97,280,349 (92,972)
query : 1 - 3,027 (3,027/3,027)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 16, nucl 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000580613 (
ENST00000476419
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,187,378 - 97,279,044 (91,667)
query : 1 - 1,691 (1,691/1,691)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000477603 (
ENST00000394184
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,187,380 - 97,279,115 (91,736)
query : 1 - 1,965 (1,965/1,965)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto_mito 14.3333, mito_pero 13.3333,
cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000494521
(
AK299897
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,187,380 - 97,279,115 (91,736)
query : 1 - 1,965 (1,965/1,965)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR006536 : HnRNP-L/PTB/hephaestus splicing factor
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0003723 : Molecular Function : RNA binding
0005634 : Cellular Component : nucleus
0006397 : Biological Process : mRNA processing
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto_mito 14.3333, mito_pero 13.3333,
cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000037595
(
BC016582
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,187,392 - 97,280,128 (92,737)
query : 1 - 2,795 (2,795/2,811)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR000504 : RNA recognition motif domain
IPR006536 : HnRNP-L/PTB/hephaestus splicing factor
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0003723 : Molecular Function : RNA binding
0005634 : Cellular Component : nucleus
0006397 : Biological Process : mRNA processing
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 16, nucl 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000059586
(
AB051233
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,187,395 - 97,279,044 (91,650)
query : 1 - 1,674 (1,674/1,674)
13 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.989;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR006536 : HnRNP-L/PTB/hephaestus splicing factor
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0003723 : Molecular Function : RNA binding
0005634 : Cellular Component : nucleus
0006397 : Biological Process : mRNA processing
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000490008
(
AK295384
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,188,273 - 97,279,026 (90,754)
query : 1 - 1,700 (1,700/1,700)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR006536 : HnRNP-L/PTB/hephaestus splicing factor
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0003723 : Molecular Function : RNA binding
0005634 : Cellular Component : nucleus
0006397 : Biological Process : mRNA processing
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 12, nucl 5.5, mito 5, extr 4,
pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000641032 (
ENST00000541987
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,188,273 - 97,279,026 (90,754)
query : 1 - 1,700 (1,700/1,700)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 12, nucl 5.5, mito 5, extr 4,
pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000005990
(
AK022716
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,243,143 - 97,280,346 (37,204)
query : 1 - 2,544 (2,544/2,544)
9 exons
identity = 0.996
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.995;
1.000;0.995)3'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR006536 : HnRNP-L/PTB/hephaestus splicing factor
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0003723 : Molecular Function : RNA binding
0005634 : Cellular Component : nucleus
0006397 : Biological Process : mRNA processing
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto 10.5, cyto_nucl 6, extr 4, pero 2,
extr_plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000564694 (
ENST00000459735
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,250,504 - 97,278,484 (27,981)
query : 1 - 791 (791/791)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 15, nucl 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000081301
(
AF530582
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,250,750 - 97,279,003 (28,254)
query : 1 - 764 (764/764)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.6667, cyto 13.5, cyto_plas 8.66667,
nucl 8.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000081302
(
AF530583
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,250,750 - 97,279,003 (28,254)
query : 1 - 776 (776/776)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 13.1667, cyto_plas 8.66667,
nucl 7.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000081303
(
AF530584
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,250,750 - 97,279,003 (28,254)
query : 1 - 761 (761/761)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 13.1667, cyto_plas 8.66667,
nucl 7.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000081304
(
AF530585
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,250,750 - 97,279,003 (28,254)
query : 1 - 779 (779/779)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.6667, cyto 13.5, cyto_plas 8.66667,
nucl 8.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000580961 (
ENST00000476783
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,250,750 - 97,279,003 (28,254)
query : 1 - 779 (779/779)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.6667, cyto 13.5, cyto_plas 8.66667,
nucl 8.5, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000596366 (
ENST00000492905
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,250,750 - 97,279,003 (28,254)
query : 1 - 776 (776/776)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 13.1667, cyto_plas 8.66667,
nucl 7.5, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0029215
HIT000092215
(
BC030757
)
Representative transcript
(Conserved hypothetical protein.)
genome : 97,260,516 - 97,261,847 (1,332)
query : 4 - 1,334 (1,331/1,349)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_nucl 13, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029215)
HIX0000801
HIT000567269 (
ENST00000462433
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,272,367 - 97,278,484 (6,118)
query : 1 - 365 (365/365)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 11, extr 5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0000801
HIT000008607
(
AK025333
)
(Polypyrimidine tract-binding protein 2; Neural polypyrimidine tract-binding protein; Neurally-enriched homolog of PTB; PTB-like protein;)
genome : 97,272,421 - 97,280,347 (7,927)
query : 1 - 1,897 (1,897/1,917)
4 exons
identity = 0.995
5'(1.000;1.000;1.000;0.994)3'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 15, nucl 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000801)
HIX0214295
HIT000689862 (
ENST00000577912
)
(Hypothetical short protein.)
genome : 97,401,101 - 97,401,219 (119)
query : 1 - 119 (119/119)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214295)
HIX0000804
HIT000197159 (
NM_000110
)
(Dihydropyrimidine dehydrogenase [NADP(+)]; DHPDHase; DPD; EC=1.3.1.2; Dihydrothymine dehydrogenase; Dihydrouracil dehydrogenase; Precursor;)
genome : 97,543,299 - 98,386,615 (843,317)
query : 1 - 4,448 (4,448/4,451)
23 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.999
EC number :
EC 1.3.1.2
KEGG pathway :
00240 : Pyrimidine metabolism (63)
00410 : beta-Alanine metabolism (34)
00770 : Pantothenate and CoA biosynthesis (30)
00983 : Drug metabolism - other enzymes (20)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 14, nucl 7.5, pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000804)
HIX0000804
HIT000351472 (
ENST00000370192
)
(Dihydropyrimidine dehydrogenase [NADP(+)]; DHPDHase; DPD; EC=1.3.1.2; Dihydrothymine dehydrogenase; Dihydrouracil dehydrogenase; Precursor;)
genome : 97,543,299 - 98,386,579 (843,281)
query : 1 - 4,412 (4,412/4,412)
23 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.3.1.2
KEGG pathway :
00240 : Pyrimidine metabolism (63)
00410 : beta-Alanine metabolism (34)
00770 : Pantothenate and CoA biosynthesis (30)
00983 : Drug metabolism - other enzymes (20)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 14, nucl 6.5, pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000804)
HIX0000804
HIT000218575
(
U20938
)
Representative transcript
(Dihydropyrimidine dehydrogenase [NADP(+)]; DHPDHase; DPD; EC=1.3.1.2; Dihydrothymine dehydrogenase; Dihydrouracil dehydrogenase; Precursor;)
genome : 97,543,302 - 98,386,579 (843,278)
query : 1 - 4,409 (4,409/4,409)
23 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.2.1.2
,
EC 1.3.1.2
KEGG pathway :
00240 : Pyrimidine metabolism (63)
00410 : beta-Alanine metabolism (34)
00630 : Glyoxylate and dicarboxylate metabolism (63)
00680 : Methane metabolism (75)
00770 : Pantothenate and CoA biosynthesis (30)
00910 : Nitrogen metabolism (50)
00983 : Drug metabolism - other enzymes (20)
01100 : Metabolic pathways (1346)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005720 : Dihydroorotate dehydrogenase domain
IPR009051 : Alpha-helical ferredoxin
IPR012135 : Dihydroorotate dehydrogenase, class 1/ 2
IPR013785 : Aldolase-type TIM barrel
IPR017896 : 4Fe-4S ferredoxin-type, iron-sulphur binding domain
IPR017900 : 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
IPR028261 : Dihydroprymidine dehydrogenase domain II
GO :
0003824 : Molecular Function : catalytic activity
0004152 : Molecular Function : dihydroorotate dehydrogenase activity
0004158 : Molecular Function : dihydroorotate oxidase activity
0005737 : Cellular Component : cytoplasm
0006222 : Biological Process : UMP biosynthetic process
0051536 : Molecular Function : iron-sulfur cluster binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 14, nucl 7.5, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000804)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB220516
Mus
sp. (Mouse) : BC039699
Danio
sp. (Zebrafish) : BC066602
Bos
sp. (Cow) : BC151489
Gallus
sp. (Chicken) : CR523773
Pongo
sp. (Orangutan) : CR859859
Rattus
sp. (Rat) : D85035
Oryzias
sp. (Medaka) : ENSORLT00000017097
Tetraodon
sp. (Tetraodon) : GSTENT00010070001
Takifugu
sp. (Fugu) : SINFRUT00000163102
Monodelphis
sp. (Opossum) : XM_001381801
Equus
sp. (Horse) : XM_001490618
Pan
sp. (Chimpanzee) : XM_513583
Canis
sp. (Dog) : XM_537061
HIX0000804
HIT000217887
(
U09178
)
(Dihydropyrimidine dehydrogenase [NADP(+)]; DHPDHase; DPD; EC=1.3.1.2; Dihydrothymine dehydrogenase; Dihydrouracil dehydrogenase; Precursor;)
genome : 97,543,748 - 98,386,559 (842,812)
query : 1 - 3,941 (3,941/3,951)
23 exons
identity = 0.996
3'(0.990;1.000;0.993)5'
coverage = 0.997
EC number :
EC 1.3.1.2
KEGG pathway :
00240 : Pyrimidine metabolism (63)
00410 : beta-Alanine metabolism (34)
00770 : Pantothenate and CoA biosynthesis (30)
00983 : Drug metabolism - other enzymes (20)
01100 : Metabolic pathways (1346)
InterPro :
IPR005720 : Dihydroorotate dehydrogenase domain
IPR009051 : Alpha-helical ferredoxin
IPR012135 : Dihydroorotate dehydrogenase, class 1/ 2
IPR013785 : Aldolase-type TIM barrel
IPR017896 : 4Fe-4S ferredoxin-type, iron-sulphur binding domain
IPR017900 : 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
IPR028261 : Dihydroprymidine dehydrogenase domain II
GO :
0003824 : Molecular Function : catalytic activity
0004152 : Molecular Function : dihydroorotate dehydrogenase activity
0004158 : Molecular Function : dihydroorotate oxidase activity
0005737 : Cellular Component : cytoplasm
0006222 : Biological Process : UMP biosynthetic process
0051536 : Molecular Function : iron-sulfur cluster binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 14, nucl 8.5, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000804)
HIX0000804
HIT000424014
(
AK291217
)
(Dihydropyrimidine dehydrogenase [NADP(+)]; DHPDHase; DPD; EC=1.3.1.2; Dihydrothymine dehydrogenase; Dihydrouracil dehydrogenase; Precursor;)
genome : 97,544,115 - 98,386,581 (842,467)
query : 1 - 3,598 (3,598/3,598)
23 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.3.1.2
KEGG pathway :
00240 : Pyrimidine metabolism (63)
00410 : beta-Alanine metabolism (34)
00770 : Pantothenate and CoA biosynthesis (30)
00983 : Drug metabolism - other enzymes (20)
01100 : Metabolic pathways (1346)
InterPro :
IPR005720 : Dihydroorotate dehydrogenase domain
IPR009051 : Alpha-helical ferredoxin
IPR012135 : Dihydroorotate dehydrogenase, class 1/ 2
IPR013785 : Aldolase-type TIM barrel
IPR017896 : 4Fe-4S ferredoxin-type, iron-sulphur binding domain
IPR017900 : 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
IPR028261 : Dihydroprymidine dehydrogenase domain II
GO :
0003824 : Molecular Function : catalytic activity
0004152 : Molecular Function : dihydroorotate dehydrogenase activity
0004158 : Molecular Function : dihydroorotate oxidase activity
0005737 : Cellular Component : cytoplasm
0006222 : Biological Process : UMP biosynthetic process
0051536 : Molecular Function : iron-sulfur cluster binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 14, nucl 6.5, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000804)
HIX0000804
HIT000390678
(
BC131777
)
(Dihydropyrimidine dehydrogenase [NADP(+)]; DHPDHase; DPD; EC=1.3.1.2; Dihydrothymine dehydrogenase; Dihydrouracil dehydrogenase; Precursor;)
genome : 97,544,190 - 98,386,531 (842,342)
query : 1 - 3,473 (3,473/3,473)
23 exons
identity = 0.999
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.3.1.2
KEGG pathway :
00240 : Pyrimidine metabolism (63)
00410 : beta-Alanine metabolism (34)
00770 : Pantothenate and CoA biosynthesis (30)
00983 : Drug metabolism - other enzymes (20)
01100 : Metabolic pathways (1346)
InterPro :
IPR005720 : Dihydroorotate dehydrogenase domain
IPR009051 : Alpha-helical ferredoxin
IPR012135 : Dihydroorotate dehydrogenase, class 1/ 2
IPR013785 : Aldolase-type TIM barrel
IPR017896 : 4Fe-4S ferredoxin-type, iron-sulphur binding domain
IPR017900 : 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
IPR028261 : Dihydroprymidine dehydrogenase domain II
GO :
0003824 : Molecular Function : catalytic activity
0004152 : Molecular Function : dihydroorotate dehydrogenase activity
0004158 : Molecular Function : dihydroorotate oxidase activity
0005737 : Cellular Component : cytoplasm
0006222 : Biological Process : UMP biosynthetic process
0051536 : Molecular Function : iron-sulfur cluster binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 14, nucl 7.5, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000804)
HIX0000804
HIT000390679
(
BC131778
)
(Dihydropyrimidine dehydrogenase [NADP(+)]; DHPDHase; DPD; EC=1.3.1.2; Dihydrothymine dehydrogenase; Dihydrouracil dehydrogenase; Precursor;)
genome : 97,544,190 - 98,386,531 (842,342)
query : 1 - 3,473 (3,473/3,473)
23 exons
identity = 0.999
3'(0.998;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.3.1.2
KEGG pathway :
00240 : Pyrimidine metabolism (63)
00410 : beta-Alanine metabolism (34)
00770 : Pantothenate and CoA biosynthesis (30)
00983 : Drug metabolism - other enzymes (20)
01100 : Metabolic pathways (1346)
InterPro :
IPR005720 : Dihydroorotate dehydrogenase domain
IPR009051 : Alpha-helical ferredoxin
IPR012135 : Dihydroorotate dehydrogenase, class 1/ 2
IPR013785 : Aldolase-type TIM barrel
IPR017896 : 4Fe-4S ferredoxin-type, iron-sulphur binding domain
IPR017900 : 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
IPR028261 : Dihydroprymidine dehydrogenase domain II
GO :
0003824 : Molecular Function : catalytic activity
0004152 : Molecular Function : dihydroorotate dehydrogenase activity
0004158 : Molecular Function : dihydroorotate oxidase activity
0005737 : Cellular Component : cytoplasm
0006222 : Biological Process : UMP biosynthetic process
0051536 : Molecular Function : iron-sulfur cluster binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 14, nucl 6.5, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000804)
HIX0000804
HIT000058007
(
AB003063
)
(Dihydropyrimidine dehydrogenase [NADP(+)]; DHPDHase; DPD; EC=1.3.1.2; Dihydrothymine dehydrogenase; Dihydrouracil dehydrogenase; Precursor;)
genome : 97,544,532 - 98,386,478 (841,947)
query : 1 - 3,078 (3,078/3,078)
23 exons
identity = 0.999
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.3.1.2
KEGG pathway :
00240 : Pyrimidine metabolism (63)
00410 : beta-Alanine metabolism (34)
00770 : Pantothenate and CoA biosynthesis (30)
00983 : Drug metabolism - other enzymes (20)
01100 : Metabolic pathways (1346)
InterPro :
IPR005720 : Dihydroorotate dehydrogenase domain
IPR009051 : Alpha-helical ferredoxin
IPR012135 : Dihydroorotate dehydrogenase, class 1/ 2
IPR013785 : Aldolase-type TIM barrel
IPR017896 : 4Fe-4S ferredoxin-type, iron-sulphur binding domain
IPR017900 : 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
IPR028261 : Dihydroprymidine dehydrogenase domain II
GO :
0003824 : Molecular Function : catalytic activity
0004152 : Molecular Function : dihydroorotate dehydrogenase activity
0004158 : Molecular Function : dihydroorotate oxidase activity
0005737 : Cellular Component : cytoplasm
0006222 : Biological Process : UMP biosynthetic process
0051536 : Molecular Function : iron-sulfur cluster binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 14, nucl 7.5, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000804)
HIX0160538
HIT000726798 (
NR_046590
)
(Conserved hypothetical protein.)
genome : 97,561,479 - 97,788,511 (227,033)
query : 1 - 533 (533/548)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, cyto 1.5, cyto_nucl 1.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160538)
HIX0160538
HIT000520914 (
ENST00000422980
)
(Conserved hypothetical protein.)
genome : 97,561,479 - 97,788,511 (227,033)
query : 1 - 533 (533/533)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, cyto 1.5, cyto_nucl 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160538)
HIX0020811
HIT000007791
(
AK024517
)
Representative transcript
(Conserved hypothetical protein.)
genome : 97,594,641 - 97,595,338 (698)
query : 1 - 698 (698/714)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 11, mito 9, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020811)
AL356479.12
96000001-96088535 F +
NCBI
AC096538.2
96088536-96156674 F +
NCBI
AL683887.15
96156675-96283167 F +
NCBI
AC092812.2
96283168-96415750 F +
NCBI
AC099566.2
96415751-96476133 F +
NCBI
AL390121.6
96476134-96626529 F +
NCBI
AL138801.20
96626530-96771409 F +
NCBI
BX546457.1
96771410-96841380 F +
NCBI
AC118552.2
96841381-96847940 F +
NCBI
AC092393.3
96847941-96938466 F +
NCBI
AL136325.6
96938467-97021338 F +
NCBI
AL390919.9
97021339-97023596 F +
NCBI
AL139347.10
97023597-97095606 F +
NCBI
AL357150.7
97095607-97282884 F +
NCBI
AL357952.7
97282885-97326240 F +
NCBI
AL592205.4
97326241-97452064 F +
NCBI
AC091608.2
97452065-97572632 F +
NCBI
AC099787.2
97572633-97600000 F -
NCBI