bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0009199
HIT000350799 (
ENST00000369519
)
(RNA-binding protein 20; RNA-binding motif protein 20;)
genome : 112,404,155 - 112,599,227 (195,073)
query : 1 - 7,233 (7,233/7,233)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009199)
HIX0009199
HIT000558141
(
EU822950
)
Representative transcript
(RNA-binding protein 20; RNA-binding motif protein 20;)
genome : 112,404,155 - 112,599,227 (195,073)
query : 1 - 7,233 (7,233/7,233)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR000690 : Zinc finger, C2H2-type matrin
IPR003604 : Zinc finger, U1-type
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0005634 : Cellular Component : nucleus
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009199)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK142175
Equus
sp. (Horse) : ENSECAT00000022941
Monodelphis
sp. (Opossum) : ENSMODT00000013278
Rattus
sp. (Rat) : ENSRNOT00000019746
Tetraodon
sp. (Tetraodon) : GSTENT00020019001
Takifugu
sp. (Fugu) : SINFRUT00000127247
Macaca
sp. (Macaque) : XM_001087170
Gallus
sp. (Chicken) : XM_421755
Pan
sp. (Chimpanzee) : XM_508032
Canis
sp. (Dog) : XM_544017
Bos
sp. (Cow) : XM_603772
Danio
sp. (Zebrafish) : XM_678130
HIX0009199
HIT000559890 (
NM_001134363
)
(RNA-binding protein 20; RNA-binding motif protein 20;)
genome : 112,404,155 - 112,599,227 (195,073)
query : 1 - 7,233 (7,233/7,233)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009199)
HIX0209467
HIT000615630 (
ENST00000516227
)
(Hypothetical short protein.)
genome : 112,516,214 - 112,516,481 (268)
query : 1 - 268 (268/268)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209467)
HIX0009199
HIT000057210
(
BX648563
)
(RNA-binding protein 20; RNA-binding motif protein 20;)
genome : 112,581,455 - 112,599,226 (17,772)
query : 1 - 4,097 (4,097/4,116)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000690 : Zinc finger, C2H2-type matrin
IPR003604 : Zinc finger, U1-type
GO :
0003676 : Molecular Function : nucleic acid binding
0005634 : Cellular Component : nucleus
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, nucl 11, cyto_nucl 9.5, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009199)
HIX0009199
HIT000497426
(
AK302802
)
(RNA-binding protein 20; RNA-binding motif protein 20;)
genome : 112,581,503 - 112,596,523 (15,021)
query : 1 - 1,346 (1,346/1,346)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000690 : Zinc finger, C2H2-type matrin
IPR003604 : Zinc finger, U1-type
GO :
0003676 : Molecular Function : nucleic acid binding
0005634 : Cellular Component : nucleus
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto 11, extr 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009199)
HIX0009199
HIT000575613 (
ENST00000471172
)
(RNA-binding protein 20; RNA-binding motif protein 20;)
genome : 112,583,346 - 112,591,271 (7,926)
query : 1 - 480 (480/480)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009199)
HIX0009199
HIT000584365 (
ENST00000480343
)
(RNA-binding protein 20; RNA-binding motif protein 20;)
genome : 112,587,529 - 112,595,992 (8,464)
query : 1 - 573 (573/573)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 8, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009199)
HIX0009199
HIT000570459 (
ENST00000465774
)
(Conserved hypothetical protein.)
genome : 112,594,936 - 112,596,016 (1,081)
query : 1 - 905 (905/905)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009199)
HIX0009199
HIT000026996
(
AL832084
)
(Conserved hypothetical protein.)
genome : 112,595,653 - 112,599,224 (3,572)
query : 1 - 3,572 (3,572/3,601)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, cyto 14.5, nucl 12.5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009199)
HIX0009200
HIT000018473
(
AK093606
)
(Conserved hypothetical protein.)
genome : 112,628,648 - 112,630,662 (2,015)
query : 1 - 2,014 (2,014/2,014)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 4, cyto 4, cyto_pero 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009200)
HIX0009200
HIT000563107 (
NR_026932
)
(Conserved hypothetical protein.)
genome : 112,628,648 - 112,630,662 (2,015)
query : 1 - 2,015 (2,015/2,015)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 4, cyto 4, cyto_pero 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009200)
HIX0170664
HIT000514183 (
ENST00000416249
)
(Hypothetical short protein.)
genome : 112,629,501 - 112,631,352 (1,852)
query : 1 - 401 (401/401)
2 exons
identity = 0.995
5'(1.000;0.993)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 12.5, extr 9, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170664)
HIX0009200
HIT000022557
(
AK097703
)
Representative transcript
(Conserved hypothetical protein.)
genome : 112,629,506 - 112,631,537 (2,032)
query : 1 - 2,032 (2,032/2,032)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 13, cyto_nucl 11.6667, extr 10, cyto 6,
cyto_pero 5.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009200)
HIX0009200
HIT000518301 (
ENST00000420367
)
(Conserved hypothetical protein.)
genome : 112,629,626 - 112,631,991 (2,366)
query : 1 - 778 (778/778)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009200)
HIX0009201
HIT000204827 (
NM_014456
)
(Initiation factor eIF-4 gamma, MA3 domain containing protein.)
genome : 112,631,553 - 112,659,764 (28,212)
query : 1 - 3,614 (3,614/3,644)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 6, extr 1, pero 1, cysk 1, golg 1
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000213234 (
NM_145341
)
(Initiation factor eIF-4 gamma, MA3 domain containing protein.)
genome : 112,631,553 - 112,659,764 (28,212)
query : 1 - 3,698 (3,698/3,728)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15, cyto 13.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000656565 (
NM_001199492
)
(Initiation factor eIF-4 gamma, MA3 domain containing protein.)
genome : 112,631,553 - 112,659,764 (28,212)
query : 1 - 3,572 (3,572/3,602)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 7, plas 1, extr 1, pero 1, cysk 1,
extr_plas 1, cysk_plas 1
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000111919 (
ENST00000280154
)
(Initiation factor eIF-4 gamma, MA3 domain containing protein.)
genome : 112,631,565 - 112,659,764 (28,200)
query : 1 - 3,602 (3,602/3,602)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 6, extr 1, pero 1, cysk 1, golg 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000476570 (
ENST00000393104
)
(Initiation factor eIF-4 gamma, MA3 domain containing protein.)
genome : 112,631,596 - 112,659,763 (28,168)
query : 1 - 3,654 (3,654/3,654)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15, cyto 13.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000572178 (
ENST00000467574
)
(Initiation factor eIF-4 gamma, MA3 domain containing protein.)
genome : 112,631,651 - 112,647,519 (15,869)
query : 1 - 735 (735/735)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, nucl 6, extr 3, mito_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000431406
(
AK312540
)
(Programmed cell death protein 4; Neoplastic transformation inhibitor protein; Nuclear antigen H731-like; Protein 197/15a;)
genome : 112,631,657 - 112,657,846 (26,190)
query : 1 - 1,592 (1,592/1,592)
12 exons
identity = 0.997
5'(0.992;1.000;0.997;1.000;1.000;0.995;1.000;
1.000;0.991;0.991;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003891 : Initiation factor eIF-4 gamma, MA3
IPR016021 : MIF4-like, type 1/2/3
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 6, extr 1, pero 1, cysk 1, golg 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000434161
(
AK315295
)
Representative transcript
(Programmed cell death protein 4; Neoplastic transformation inhibitor protein; Nuclear antigen H731-like; Protein 197/15a;)
genome : 112,631,676 - 112,657,846 (26,171)
query : 2 - 1,658 (1,657/1,658)
13 exons
identity = 0.998
5'(1.000;1.000;1.000;0.997;1.000;1.000;1.000;
1.000;0.983;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR003891 : Initiation factor eIF-4 gamma, MA3
IPR016021 : MIF4-like, type 1/2/3
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 15, nucl 13.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000587549 (
ENST00000483670
)
(Conserved hypothetical protein.)
genome : 112,631,677 - 112,645,097 (13,421)
query : 1 - 774 (774/774)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 16, nucl 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000331403
(
AK223623
)
(Programmed cell death protein 4; Neoplastic transformation inhibitor protein; Nuclear antigen H731-like; Protein 197/15a;)
genome : 112,631,686 - 112,658,395 (26,710)
query : 8 - 2,123 (2,116/2,123)
12 exons
identity = 0.997
5'(1.000;1.000;0.997;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.992)3'
coverage = 0.997
InterPro :
IPR003891 : Initiation factor eIF-4 gamma, MA3
IPR016021 : MIF4-like, type 1/2/3
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 6, extr 1, pero 1, cysk 1, golg 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000040108
(
BC026104
)
(Programmed cell death protein 4; Neoplastic transformation inhibitor protein; Nuclear antigen H731-like; Protein 197/15a;)
genome : 112,631,686 - 112,658,497 (26,812)
query : 1 - 2,213 (2,213/2,228)
12 exons
identity = 0.998
5'(0.978;1.000;0.993;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR003891 : Initiation factor eIF-4 gamma, MA3
IPR016021 : MIF4-like, type 1/2/3
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 6, extr 1, pero 1, cysk 1, golg 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000041218
(
BC031049
)
(Programmed cell death protein 4; Neoplastic transformation inhibitor protein; Nuclear antigen H731-like; Protein 197/15a;)
genome : 112,631,686 - 112,658,497 (26,812)
query : 1 - 2,212 (2,212/2,227)
12 exons
identity = 0.997
5'(0.978;1.000;0.993;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR003891 : Initiation factor eIF-4 gamma, MA3
IPR016021 : MIF4-like, type 1/2/3
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 6, extr 1, pero 1, cysk 1, golg 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000491377
(
AK296753
)
(Programmed cell death protein 4; Neoplastic transformation inhibitor protein; Nuclear antigen H731-like; Protein 197/15a;)
genome : 112,631,686 - 112,657,948 (26,263)
query : 1 - 1,622 (1,622/1,622)
12 exons
identity = 0.999
5'(1.000;1.000;0.996;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.994)3'
coverage = 1.000
InterPro :
IPR003891 : Initiation factor eIF-4 gamma, MA3
IPR016021 : MIF4-like, type 1/2/3
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 6, plas 1, extr 1, pero 1, cysk 1,
extr_plas 1, cysk_plas 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000088542
(
BC015036
)
(MIF4-like, type 1/2/3 domain containing protein.)
genome : 112,631,699 - 112,647,456 (15,758)
query : 11 - 739 (729/753)
6 exons
identity = 0.999
5'(1.000;1.000;0.997;1.000;1.000;1.000)3'
coverage = 0.986
InterPro :
IPR003891 : Initiation factor eIF-4 gamma, MA3
IPR016021 : MIF4-like, type 1/2/3
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000542931 (
ENST00000444997
)
(Initiation factor eIF-4 gamma, MA3 domain containing protein.)
genome : 112,631,713 - 112,647,602 (15,890)
query : 1 - 819 (819/819)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23.5, cyto_nucl 15.5, nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000222845
(
U96628
)
(Programmed cell death protein 4; Neoplastic transformation inhibitor protein; Nuclear antigen H731-like; Protein 197/15a;)
genome : 112,631,755 - 112,657,974 (26,220)
query : 1 - 1,621 (1,621/1,626)
12 exons
identity = 0.996
5'(1.000;1.000;0.993;0.989;1.000;0.995;1.000;
1.000;1.000;1.000;0.986;0.995)3'
coverage = 0.997
InterPro :
IPR003891 : Initiation factor eIF-4 gamma, MA3
IPR016021 : MIF4-like, type 1/2/3
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 6, extr 1, pero 1, cysk 1, golg 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000054287
(
BX537500
)
(Programmed cell death protein 4; Neoplastic transformation inhibitor protein; Nuclear antigen H731-like; Protein 197/15a;)
genome : 112,632,553 - 112,658,484 (25,932)
query : 2 - 6,206 (6,205/6,225)
10 exons
identity = 0.999
5'(0.999;0.997;1.000;1.000;0.995;0.997;1.000;
1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR003891 : Initiation factor eIF-4 gamma, MA3
IPR016021 : MIF4-like, type 1/2/3
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 12.5, nucl 7.5, E.R._mito 3.5,
extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000097500
(
BC043171
)
(Hypothetical short protein.)
genome : 112,633,487 - 112,635,600 (2,114)
query : 3 - 2,115 (2,113/2,136)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 0.996
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20.5, extr_plas 11.5, mito 7, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000056481
(
BX647834
)
(Initiation factor eIF-4 gamma, MA3 domain containing protein.)
genome : 112,635,740 - 112,659,764 (24,025)
query : 1 - 3,454 (3,454/3,487)
12 exons
identity = 0.998
5'(1.000;1.000;0.990;0.989;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR003891 : Initiation factor eIF-4 gamma, MA3
IPR016021 : MIF4-like, type 1/2/3
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 14.5, cyto 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000596393 (
ENST00000492932
)
(Initiation factor eIF-4 gamma, MA3 domain containing protein.)
genome : 112,640,077 - 112,647,556 (7,480)
query : 1 - 813 (813/813)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 16.5, nucl 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000055704
(
BX641168
)
(Programmed cell death protein 4; Neoplastic transformation inhibitor protein; Nuclear antigen H731-like; Protein 197/15a;)
genome : 112,642,891 - 112,651,165 (8,275)
query : 1 - 4,331 (4,331/4,348)
3 exons
identity = 0.999
5'(0.999;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR003891 : Initiation factor eIF-4 gamma, MA3
IPR016021 : MIF4-like, type 1/2/3
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, nucl 3, cyto 3, cyto_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000585328 (
ENST00000481353
)
(Initiation factor eIF-4 gamma, MA3 domain containing protein.)
genome : 112,644,529 - 112,653,937 (9,409)
query : 1 - 1,120 (1,120/1,120)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 6, lyso 4, cyto_mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000567406 (
ENST00000462577
)
(Initiation factor eIF-4 gamma, MA3 domain containing protein.)
genome : 112,645,011 - 112,657,880 (12,870)
query : 1 - 789 (789/789)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 15, extr 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000592666 (
ENST00000489049
)
(Initiation factor eIF-4 gamma, MA3 domain containing protein.)
genome : 112,647,511 - 112,650,628 (3,118)
query : 1 - 547 (547/547)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 4.5, cyto_nucl 4.5, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000587476 (
ENST00000483595
)
(Initiation factor eIF-4 gamma, MA3 domain containing protein.)
genome : 112,647,531 - 112,655,801 (8,271)
query : 1 - 531 (531/531)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 10.5, extr 8, nucl 5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000601593 (
ENST00000498367
)
(Initiation factor eIF-4 gamma, MA3 domain containing protein.)
genome : 112,650,396 - 112,658,476 (8,081)
query : 1 - 975 (975/975)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, nucl 10, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000692816 (
ENST00000580906
)
(Non-protein coding transcript.)
genome : 112,657,848 - 112,657,913 (66)
query : 1 - 66 (66/66)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000725891 (
NR_039828
)
(Non-protein coding transcript.)
genome : 112,657,848 - 112,657,913 (66)
query : 1 - 66 (66/66)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009201
HIT000023840
(
AL049932
)
(Conserved hypothetical protein.)
genome : 112,657,936 - 112,659,764 (1,829)
query : 19 - 1,845 (1,827/1,865)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 9, cyto_nucl 8.5, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009201)
HIX0009202
HIT000008998
(
AK025724
)
(BBSome-interacting protein 1 isoform 2.)
genome : 112,658,488 - 112,678,944 (20,457)
query : 1 - 2,031 (2,031/2,047)
4 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR028233 : Cilia BBSome complex subunit 10
GO :
0034464 : Cellular Component : BBSome
0042384 : Biological Process : cilium assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto 9.5, cyto_nucl 8, nucl 5.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000656040 (
NM_001195305
)
(BBSome-interacting protein 1 isoform 2.)
genome : 112,658,488 - 112,679,124 (20,637)
query : 1 - 2,211 (2,211/2,226)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto 9.5, cyto_nucl 8, nucl 5.5, extr 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000723037 (
NM_001243783
)
(BBSome-interacting protein 1 isoform 4.)
genome : 112,658,488 - 112,679,124 (20,637)
query : 1 - 2,118 (2,118/2,133)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, mito 10
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000264952
(
BC073157
)
Representative transcript
(BBSome-interacting protein 1 isoform 2.)
genome : 112,658,488 - 112,679,033 (20,546)
query : 1 - 2,120 (2,120/2,135)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR028233 : Cilia BBSome complex subunit 10
GO :
0034464 : Cellular Component : BBSome
0042384 : Biological Process : cilium assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto 9.5, cyto_nucl 8, nucl 5.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK010048
Bos
sp. (Cow) : BC109696
Equus
sp. (Horse) : ENSECAT00000021669
Monodelphis
sp. (Opossum) : ENSMODT00000037332
Pongo
sp. (Orangutan) : ENSPPYT00000003191
Takifugu
sp. (Fugu) : SINFRUT00000178204
Rattus
sp. (Rat) : XM_001062593
Macaca
sp. (Macaque) : XM_001087141
Pan
sp. (Chimpanzee) : XM_508035
HIX0009202
HIT000656039 (
NM_001195304
)
(BBSome-interacting protein 1 isoform 1.)
genome : 112,658,488 - 112,679,124 (20,637)
query : 1 - 2,368 (2,368/2,368)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto 7, extr 6, mito 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000656042 (
NM_001195307
)
(BBSome-interacting protein 1 isoform 3.)
genome : 112,658,488 - 112,679,124 (20,637)
query : 1 - 2,136 (2,136/2,136)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 12.5, mito 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000546748 (
ENST00000448814
)
(BBSome-interacting protein 1 isoform 2.)
genome : 112,658,488 - 112,679,032 (20,545)
query : 1 - 2,119 (2,119/2,119)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto 9.5, cyto_nucl 8, nucl 5.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000656041 (
NM_001195306
)
(BBSome-interacting protein 1 isoform 2.)
genome : 112,658,488 - 112,678,694 (20,207)
query : 1 - 2,057 (2,057/2,057)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto 9.5, cyto_nucl 8, nucl 5.5, extr 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000425992
(
AK307126
)
(BBSome-interacting protein 1 isoform 2.)
genome : 112,659,589 - 112,678,694 (19,106)
query : 1 - 956 (956/956)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR028233 : Cilia BBSome complex subunit 10
GO :
0034464 : Cellular Component : BBSome
0042384 : Biological Process : cilium assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto 9.5, cyto_nucl 8, nucl 5.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000338285
(
BC105804
)
(BBSome-interacting protein 1 isoform 1.)
genome : 112,659,650 - 112,678,959 (19,310)
query : 5 - 1,045 (1,041/1,070)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.996
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto 7, extr 6, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000088730
(
BC015550
)
(BBSome-interacting protein 1 isoform 2.)
genome : 112,659,650 - 112,677,970 (18,321)
query : 1 - 802 (802/820)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR028233 : Cilia BBSome complex subunit 10
GO :
0034464 : Cellular Component : BBSome
0042384 : Biological Process : cilium assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto 9.5, cyto_nucl 8, nucl 5.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000426180
(
AK307314
)
(BBSome-interacting protein 1 isoform 1.)
genome : 112,659,672 - 112,679,000 (19,329)
query : 1 - 1,060 (1,060/1,060)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto 7, extr 6, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000544939 (
ENST00000447005
)
(BBSome-interacting protein 1 isoform 4.)
genome : 112,659,714 - 112,678,959 (19,246)
query : 1 - 727 (727/727)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, mito 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000551995 (
ENST00000454061
)
(BBSome-interacting protein 1 isoform 1.)
genome : 112,659,879 - 112,678,959 (19,081)
query : 1 - 812 (812/812)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto 7, extr 6, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000260669
(
BC062778
)
(BBSome-interacting protein 1 isoform 3.)
genome : 112,659,912 - 112,678,915 (19,004)
query : 5 - 507 (503/538)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.988
InterPro :
IPR028233 : Cilia BBSome complex subunit 10
GO :
0034464 : Cellular Component : BBSome
0042384 : Biological Process : cilium assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 12.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000521207 (
ENST00000423273
)
(BBSome-interacting protein 1 isoform 3.)
genome : 112,659,923 - 112,678,915 (18,993)
query : 1 - 492 (492/492)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 12.5, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000534496 (
ENST00000436562
)
(BBSome-interacting protein 1 isoform 4.)
genome : 112,659,987 - 112,678,915 (18,929)
query : 1 - 383 (383/383)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, mito 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000045702
(
AK125829
)
(BBSome-interacting protein 1 isoform 3.)
genome : 112,659,992 - 112,664,703 (4,712)
query : 1 - 4,711 (4,711/4,711)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
InterPro :
IPR028233 : Cilia BBSome complex subunit 10
GO :
0034464 : Cellular Component : BBSome
0042384 : Biological Process : cilium assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_nucl 14.5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000481499 (
ENST00000398289
)
(BBSome-interacting protein 1 isoform 2.)
genome : 112,659,996 - 112,678,940 (18,945)
query : 1 - 616 (616/616)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, nucl 8, mito 5, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000337697
(
BC104249
)
(BBSome-interacting protein 1 isoform 2.)
genome : 112,660,148 - 112,678,933 (18,786)
query : 1 - 360 (360/361)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 0.997
InterPro :
IPR028233 : Cilia BBSome complex subunit 10
GO :
0034464 : Cellular Component : BBSome
0042384 : Biological Process : cilium assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto 8.5, cyto_nucl 8, nucl 6.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000337696
(
BC104248
)
(BBSome-interacting protein 1 isoform 2.)
genome : 112,660,148 - 112,678,931 (18,784)
query : 1 - 358 (358/359)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 0.997
InterPro :
IPR028233 : Cilia BBSome complex subunit 10
GO :
0034464 : Cellular Component : BBSome
0042384 : Biological Process : cilium assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto 8.5, cyto_nucl 8, nucl 6.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000386713
(
BC113000
)
(BBSome-interacting protein 1 isoform 2.)
genome : 112,660,149 - 112,678,933 (18,785)
query : 1 - 359 (359/359)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR028233 : Cilia BBSome complex subunit 10
GO :
0034464 : Cellular Component : BBSome
0042384 : Biological Process : cilium assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto 8.5, cyto_nucl 8, nucl 6.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000386714
(
BC113001
)
(BBSome-interacting protein 1 isoform 2.)
genome : 112,660,149 - 112,678,933 (18,785)
query : 1 - 359 (359/359)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR028233 : Cilia BBSome complex subunit 10
GO :
0034464 : Cellular Component : BBSome
0042384 : Biological Process : cilium assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto 8.5, cyto_nucl 8, nucl 6.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000004775
(
AK021501
)
(BBSome-interacting protein 1 isoform 1.)
genome : 112,666,237 - 112,678,925 (12,689)
query : 1 - 1,500 (1,500/1,500)
3 exons
identity = 0.989
3'(0.988;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 13.5, nucl 7.5, mito 5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009202
HIT000519984 (
ENST00000422050
)
(Conserved hypothetical protein.)
genome : 112,666,237 - 112,678,925 (12,689)
query : 1 - 1,498 (1,498/1,498)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 8, nucl 4, cyto_pero 4, cyto_golg 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009203
HIT000023744
(
AL049314
)
Representative transcript
(Conserved hypothetical protein.)
genome : 112,670,356 - 112,672,006 (1,651)
query : 4 - 1,654 (1,651/1,767)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, nucl 8.5, cyto_nucl 6.5, cyto 3.5, extr 2,
pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009203)
HIX0025984
HIT000044719
(
AK124846
)
Representative transcript
(Conserved hypothetical protein.)
genome : 112,671,932 - 112,674,685 (2,754)
query : 1 - 2,754 (2,754/2,754)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 5, cyto 5, cyto_nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025984)
HIX0009202
HIT000529781 (
ENST00000431847
)
(Hypothetical short protein.)
genome : 112,677,717 - 112,678,919 (1,203)
query : 1 - 296 (296/296)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 3, mito 3, cyto_mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009202)
HIX0009204
HIT000203866 (
NM_007373
)
(Leucine-rich repeat protein SHOC-2; Protein soc-2 homolog; Protein sur-8 homolog;)
genome : 112,679,301 - 112,773,425 (94,125)
query : 1 - 3,947 (3,947/3,962)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 18.5, cyto 12
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009204)
HIX0009204
HIT000109632 (
ENST00000265277
)
(Leucine-rich repeat protein SHOC-2; Protein soc-2 homolog; Protein sur-8 homolog;)
genome : 112,679,301 - 112,773,422 (94,122)
query : 1 - 3,806 (3,806/3,806)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 17.5, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009204)
HIX0009204
HIT000350732 (
ENST00000369452
)
(Leucine-rich repeat protein SHOC-2; Protein soc-2 homolog; Protein sur-8 homolog;)
genome : 112,679,305 - 112,773,425 (94,121)
query : 1 - 3,943 (3,943/3,943)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 18.5, cyto 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009204)
HIX0009204
HIT000584187 (
ENST00000480155
)
(Leucine-rich repeat protein SHOC-2; Protein soc-2 homolog; Protein sur-8 homolog;)
genome : 112,679,351 - 112,724,282 (44,932)
query : 1 - 650 (650/650)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009204)
HIX0009204
HIT000425630
(
AK292833
)
(Leucine-rich repeat protein SHOC-2; Protein soc-2 homolog; Protein sur-8 homolog;)
genome : 112,679,362 - 112,771,740 (92,379)
query : 3 - 2,388 (2,386/2,388)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.992;1.000;1.000;
1.000;0.992;1.000)3'
coverage = 0.999
InterPro :
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
IPR025875 : Leucine rich repeat 4
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 18.5, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009204)
HIX0009204
HIT000592995 (
ENST00000489390
)
(Leucine-rich repeat protein SHOC-2; Protein soc-2 homolog; Protein sur-8 homolog;)
genome : 112,679,361 - 112,771,428 (92,068)
query : 1 - 815 (815/815)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17, cyto 14.5, nucl 12.5, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009204)
HIX0009204
HIT000487895
(
AK293271
)
(Leucine-rich repeat protein SHOC-2 isoform 2.)
genome : 112,679,362 - 112,772,105 (92,744)
query : 1 - 1,629 (1,629/1,629)
8 exons
identity = 0.998
5'(0.981;1.000;1.000;1.000;1.000;0.993;1.000;
0.997)3'
coverage = 1.000
InterPro :
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
IPR025875 : Leucine rich repeat 4
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 11.5, cyto 8.5, mito 7, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009204)
HIX0009204
HIT000097925
(
BC044752
)
(Leucine-rich repeat protein SHOC-2; Protein soc-2 homolog; Protein sur-8 homolog;)
genome : 112,679,367 - 112,773,425 (94,059)
query : 3 - 3,883 (3,881/3,898)
9 exons
identity = 0.999
5'(1.000;0.999;0.986;1.000;1.000;1.000;0.993;
1.000;1.000)3'
coverage = 0.999
InterPro :
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
IPR025875 : Leucine rich repeat 4
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 18.5, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009204)
HIX0009204
HIT000000579
(
AB020669
)
(Leucine-rich repeat protein SHOC-2; Protein soc-2 homolog; Protein sur-8 homolog;)
genome : 112,679,373 - 112,773,422 (94,050)
query : 1 - 3,872 (3,872/3,872)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 18.5, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009204)
HIX0009204
HIT000057702
(
BX649055
)
(Leucine-rich repeat protein soc-2 homolog;)
genome : 112,679,375 - 112,773,423 (94,049)
query : 1 - 3,713 (3,713/3,728)
10 exons
identity = 0.997
5'(1.000;0.992;1.000;1.000;1.000;0.989;1.000;
1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
IPR025875 : Leucine rich repeat 4
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto 9, nucl 6, cyto_pero 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009204)
HIX0009204
HIT000064588
(
AF054828
)
Representative transcript
(Leucine-rich repeat protein SHOC-2; Protein soc-2 homolog; Protein sur-8 homolog;)
genome : 112,679,379 - 112,771,872 (92,494)
query : 1 - 2,316 (2,316/2,316)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
IPR025875 : Leucine rich repeat 4
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 18.5, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009204)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ851376
Mus
sp. (Mouse) : BC083060
Bos
sp. (Cow) : BC148097
Danio
sp. (Zebrafish) : BC155579
Pongo
sp. (Orangutan) : CR860795
Monodelphis
sp. (Opossum) : ENSMODT00000013212
Oryzias
sp. (Medaka) : ENSORLT00000019193
Tetraodon
sp. (Tetraodon) : GSTENT00020016001
Takifugu
sp. (Fugu) : SINFRUT00000170330
Macaca
sp. (Macaque) : XM_001087377
Equus
sp. (Horse) : XM_001496573
Pan
sp. (Chimpanzee) : XM_521602
Canis
sp. (Dog) : XM_859529
HIX0009204
HIT000593374 (
ENST00000489783
)
(Leucine-rich repeat protein SHOC-2; Protein soc-2 homolog; Protein sur-8 homolog;)
genome : 112,679,761 - 112,724,487 (44,727)
query : 1 - 749 (749/749)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009204)
HIX0190626
HIT000562912 (
NR_026715
)
(Ribosomal protein L13 family protein.)
genome : 112,696,361 - 112,697,013 (653)
query : 1 - 653 (653/653)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto_nucl 15.5, cyto 13
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0190626)
HIX0190626
HIT000528067 (
ENST00000430133
)
(Ribosomal protein L13 family protein.)
genome : 112,696,380 - 112,696,991 (612)
query : 1 - 612 (612/612)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto_nucl 15.5, cyto 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0190626)
HIX0209399
HIT000444657_05
(
DQ578126
)
Representative transcript
(Non-protein coding transcript.)
genome : 112,696,845 - 112,696,874 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209399)
HIX0025983
HIT000044644
(
AK124771
)
Representative transcript
(Hypothetical protein.)
genome : 112,703,813 - 112,707,524 (3,712)
query : 1 - 3,713 (3,713/3,713)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, plas 5, mito 3.5, cyto 3, mito_pero 2.5,
cysk_plas 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025983)
HIX0009204
HIT000724622 (
NM_001269039
)
(Leucine-rich repeat protein SHOC-2; Protein soc-2 homolog; Protein sur-8 homolog;)
genome : 112,723,883 - 112,773,425 (49,543)
query : 1 - 3,694 (3,694/3,711)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 17.5, cyto 11
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009204)
HIX0009204
HIT000053460
(
BC050445
)
(Leucine-rich repeat protein SHOC-2; Protein soc-2 homolog; Protein sur-8 homolog;)
genome : 112,723,913 - 112,773,423 (49,511)
query : 1 - 3,801 (3,801/3,823)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
IPR025875 : Leucine rich repeat 4
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 18.5, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009204)
HIX0009204
HIT000065639
(
AF068920
)
(Leucine-rich repeat protein SHOC-2; Protein soc-2 homolog; Protein sur-8 homolog;)
genome : 112,724,117 - 112,771,576 (47,460)
query : 1 - 1,749 (1,749/1,749)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
IPR025875 : Leucine rich repeat 4
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 18.5, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009204)
HIX0009204
HIT000015687
(
AK090820
)
(Leucine-rich repeat protein SHOC-2 isoform 2.)
genome : 112,724,609 - 112,773,424 (48,816)
query : 1 - 2,966 (2,966/2,966)
7 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR001611 : Leucine-rich repeat
IPR025875 : Leucine rich repeat 4
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 17.5, nucl 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009204)
HIX0009204
HIT000549772 (
ENST00000451838
)
(Leucine-rich repeat protein SHOC-2 isoform 2.)
genome : 112,724,609 - 112,773,424 (48,816)
query : 1 - 2,967 (2,967/2,967)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 17.5, nucl 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009204)
HIX0009204
HIT000600585 (
ENST00000497305
)
(Leucine-rich repeat protein SHOC-2; Protein soc-2 homolog; Protein sur-8 homolog;)
genome : 112,724,790 - 112,745,680 (20,891)
query : 1 - 325 (325/325)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 12.5, extr 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009204)
HIX0025918
HIT000391744
(
DQ149926
)
Representative transcript
(Alpha-2A adrenergic receptor; Alpha-2 adrenergic receptor subtype C10; Alpha-2A adrenoreceptor; Alpha-2A adrenoceptor; Alpha-2AAR;)
genome : 112,835,277 - 112,840,722 (5,446)
query : 1 - 5,446 (5,446/5,446)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
InterPro :
IPR001946 : Alpha 2A adrenoceptor
IPR002233 : Adrenoceptor family
GO :
0004935 : Molecular Function : adrenergic receptor activity
0004938 : Molecular Function : alpha2-adrenergic receptor activity
0006940 : Biological Process : regulation of smooth muscle contraction
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
0019229 : Biological Process : regulation of vasoconstriction
0030168 : Biological Process : platelet activation
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025918)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK140461
Danio
sp. (Zebrafish) : BC117636
Equus
sp. (Horse) : ENSECAT00000003783
Oryzias
sp. (Medaka) : ENSORLT00000019202
Tetraodon
sp. (Tetraodon) : GSTENT00020015001
Macaca
sp. (Macaque) : XM_001087738
Monodelphis
sp. (Opossum) : XM_001378014
Pan
sp. (Chimpanzee) : XM_521603
HIX0025918
HIT000385938
(
AY032736
)
(Alpha-2A adrenergic receptor; Alpha-2 adrenergic receptor subtype C10; Alpha-2A adrenoreceptor; Alpha-2A adrenoceptor; Alpha-2AAR;)
genome : 112,835,715 - 112,839,327 (3,613)
query : 1 - 3,612 (3,612/3,612)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
InterPro :
IPR001946 : Alpha 2A adrenoceptor
IPR002233 : Adrenoceptor family
GO :
0004935 : Molecular Function : adrenergic receptor activity
0004938 : Molecular Function : alpha2-adrenergic receptor activity
0006940 : Biological Process : regulation of smooth muscle contraction
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
0019229 : Biological Process : regulation of vasoconstriction
0030168 : Biological Process : platelet activation
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025918)
HIX0025918
HIT000397425
(
M23533
)
(Alpha-2A adrenergic receptor.)
genome : 112,835,715 - 112,839,327 (3,613)
query : 1 - 3,604 (3,604/3,604)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
InterPro :
IPR001946 : Alpha 2A adrenoceptor
IPR002233 : Adrenoceptor family
GO :
0004935 : Molecular Function : adrenergic receptor activity
0004938 : Molecular Function : alpha2-adrenergic receptor activity
0006940 : Biological Process : regulation of smooth muscle contraction
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
0019229 : Biological Process : regulation of vasoconstriction
0030168 : Biological Process : platelet activation
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025918)
HIX0025918
HIT000197703 (
NM_000681
)
(Alpha-2A adrenergic receptor; Alpha-2 adrenergic receptor subtype C10; Alpha-2A adrenoreceptor; Alpha-2A adrenoceptor; Alpha-2AAR;)
genome : 112,836,790 - 112,840,661 (3,872)
query : 1 - 3,872 (3,872/3,889)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025918)
HIX0025918
HIT000111920 (
ENST00000280155
)
(Alpha-2A adrenergic receptor; Alpha-2 adrenergic receptor subtype C10; Alpha-2A adrenoreceptor; Alpha-2A adrenoceptor; Alpha-2AAR;)
genome : 112,836,790 - 112,840,658 (3,869)
query : 1 - 3,869 (3,869/3,869)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025918)
HIX0025918
HIT000076224
(
AF284095
)
(Alpha-2A adrenergic receptor; Alpha-2 adrenergic receptor subtype C10; Alpha-2A adrenoreceptor; Alpha-2A adrenoceptor; Alpha-2AAR;)
genome : 112,836,921 - 112,840,570 (3,650)
query : 1 - 3,650 (3,650/3,653)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.999
InterPro :
IPR001946 : Alpha 2A adrenoceptor
IPR002233 : Adrenoceptor family
GO :
0004935 : Molecular Function : adrenergic receptor activity
0004938 : Molecular Function : alpha2-adrenergic receptor activity
0006940 : Biological Process : regulation of smooth muscle contraction
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
0019229 : Biological Process : regulation of vasoconstriction
0030168 : Biological Process : platelet activation
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025918)
HIX0025918
HIT000383894
(
AF262016
)
(Alpha-2A adrenergic receptor; Alpha-2 adrenergic receptor subtype C10; Alpha-2A adrenoreceptor; Alpha-2A adrenoceptor; Alpha-2AAR;)
genome : 112,837,282 - 112,839,222 (1,941)
query : 1 - 1,941 (1,941/1,941)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR001946 : Alpha 2A adrenoceptor
IPR002233 : Adrenoceptor family
GO :
0004935 : Molecular Function : adrenergic receptor activity
0004938 : Molecular Function : alpha2-adrenergic receptor activity
0006940 : Biological Process : regulation of smooth muscle contraction
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
0019229 : Biological Process : regulation of vasoconstriction
0030168 : Biological Process : platelet activation
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025918)
HIX0025918
HIT000053442
(
BC050414
)
(Alpha-2A adrenergic receptor; Alpha-2 adrenergic receptor subtype C10; Alpha-2A adrenoreceptor; Alpha-2A adrenoceptor; Alpha-2AAR;)
genome : 112,837,405 - 112,840,548 (3,144)
query : 1 - 3,144 (3,144/3,158)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
InterPro :
IPR001946 : Alpha 2A adrenoceptor
IPR002233 : Adrenoceptor family
GO :
0004935 : Molecular Function : adrenergic receptor activity
0004938 : Molecular Function : alpha2-adrenergic receptor activity
0006940 : Biological Process : regulation of smooth muscle contraction
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
0019229 : Biological Process : regulation of vasoconstriction
0030168 : Biological Process : platelet activation
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025918)
HIX0025918
HIT000093653
(
BC035047
)
(Alpha-2A adrenergic receptor; Alpha-2 adrenergic receptor subtype C10; Alpha-2A adrenoreceptor; Alpha-2A adrenoceptor; Alpha-2AAR;)
genome : 112,837,591 - 112,839,981 (2,391)
query : 5 - 2,395 (2,391/2,410)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.998
InterPro :
IPR001946 : Alpha 2A adrenoceptor
IPR002233 : Adrenoceptor family
GO :
0004935 : Molecular Function : adrenergic receptor activity
0004938 : Molecular Function : alpha2-adrenergic receptor activity
0006940 : Biological Process : regulation of smooth muscle contraction
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
0019229 : Biological Process : regulation of vasoconstriction
0030168 : Biological Process : platelet activation
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025918)
HIX0025918
HIT000397424
(
M18415
)
(Alpha-2A adrenergic receptor; Alpha-2 adrenergic receptor subtype C10; Alpha-2A adrenoreceptor; Alpha-2A adrenoceptor; Alpha-2AAR;)
genome : 112,837,746 - 112,839,263 (1,518)
query : 1 - 1,521 (1,521/1,521)
1 exon
identity = 0.991
5'(0.991)3'
coverage = 1.000
InterPro :
IPR001946 : Alpha 2A adrenoceptor
IPR002233 : Adrenoceptor family
GO :
0004935 : Molecular Function : adrenergic receptor activity
0004938 : Molecular Function : alpha2-adrenergic receptor activity
0006940 : Biological Process : regulation of smooth muscle contraction
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
0019229 : Biological Process : regulation of vasoconstriction
0030168 : Biological Process : platelet activation
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025918)
HIX0025918
HIT000383898
(
AF281308
)
(Alpha-2A adrenergic receptor; Alpha-2 adrenergic receptor subtype C10; Alpha-2A adrenoreceptor; Alpha-2A adrenoceptor; Alpha-2AAR;)
genome : 112,837,800 - 112,839,152 (1,353)
query : 1 - 1,353 (1,353/1,353)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR001946 : Alpha 2A adrenoceptor
IPR002233 : Adrenoceptor family
GO :
0004935 : Molecular Function : adrenergic receptor activity
0004938 : Molecular Function : alpha2-adrenergic receptor activity
0006940 : Biological Process : regulation of smooth muscle contraction
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
0019229 : Biological Process : regulation of vasoconstriction
0030168 : Biological Process : platelet activation
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025918)
HIX0025918
HIT000383906
(
AF316894
)
(Alpha-2A adrenergic receptor; Alpha-2 adrenergic receptor subtype C10; Alpha-2A adrenoreceptor; Alpha-2A adrenoceptor; Alpha-2AAR;)
genome : 112,837,800 - 112,839,152 (1,353)
query : 1 - 1,353 (1,353/1,353)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
InterPro :
IPR001946 : Alpha 2A adrenoceptor
IPR002233 : Adrenoceptor family
GO :
0004935 : Molecular Function : adrenergic receptor activity
0004938 : Molecular Function : alpha2-adrenergic receptor activity
0006940 : Biological Process : regulation of smooth muscle contraction
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
0019229 : Biological Process : regulation of vasoconstriction
0030168 : Biological Process : platelet activation
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025918)
HIX0025918
HIT000442238
(
DQ575707
)
(Non-protein coding transcript.)
genome : 112,838,059 - 112,838,089 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025918)
HIX0209412
HIT000522265 (
ENST00000424331
)
(Uncharacterised protein family UPF0390 protein.)
genome : 112,864,714 - 112,865,006 (293)
query : 1 - 293 (293/293)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 15.5, cyto 11.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209412)
HIX0171019
HIT000539896 (
ENST00000441962
)
(Conserved hypothetical protein.)
genome : 113,082,536 - 113,083,155 (620)
query : 1 - 620 (620/620)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 10, cyto_nucl 9, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171019)
HIX0170727
HIT000519531 (
ENST00000421597
)
(Hypothetical short protein.)
genome : 113,109,697 - 113,111,861 (2,165)
query : 1 - 427 (427/427)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, cyto 10, mito 7, cyto_nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170727)
HIX0170872
HIT000529930 (
ENST00000431996
)
(Conserved hypothetical protein.)
genome : 113,257,949 - 113,258,699 (751)
query : 1 - 751 (751/751)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto 11.5, cyto_nucl 8.5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170872)
HIX0009205
pHIT000018234 ( pHIT000018234 )
(Glycerol-3-phosphate acyltransferase 1, mitochondrial; GPAT-1; EC=2.3.1.15; Precursor;)
genome : 113,907,981 - 113,987,337 (79,357)
query : 1 - 2,466 (2,466/2,466)
20 exons
EC number :
EC 2.3.1.15
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
InterPro :
IPR002123 : Phospholipid/glycerol acyltransferase
GO :
0008152 : Biological Process : metabolic process
0016746 : Molecular Function : transferase activity, transferring acyl groups
SOSUI :
MEMBRANE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009205)
CAGE tag :
H21BB72H1108
HIX0009205
HIT000208110 (
NM_020918
)
(Glycerol-3-phosphate acyltransferase 1, mitochondrial; GPAT-1; EC=2.3.1.15; Precursor;)
genome : 113,909,622 - 113,943,537 (33,916)
query : 1 - 6,383 (6,383/6,402)
22 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.3.1.15
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11, cyto_nucl 8.83333, E.R. 7, cyto_mito 6.66667,
nucl 5.5, pero 4.5, mito_pero 3.33333
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009205)
HIX0009205
HIT000723162 (
NM_001244949
)
(Glycerol-3-phosphate acyltransferase 1, mitochondrial; GPAT-1; EC=2.3.1.15; Precursor;)
genome : 113,909,622 - 113,943,537 (33,916)
query : 1 - 6,387 (6,387/6,406)
22 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.3.1.15
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11, cyto_nucl 8.83333, E.R. 7, cyto_mito 6.66667,
nucl 5.5, pero 4.5, mito_pero 3.33333
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009205)
HIX0009205
HIT000027973
(
AL833061
)
(Glycerol-3-phosphate acyltransferase 1, mitochondrial; GPAT-1; EC=2.3.1.15; Precursor;)
genome : 113,909,622 - 113,943,518 (33,897)
query : 2 - 6,368 (6,367/6,387)
22 exons
identity = 0.998
3'(0.997;1.000;1.000;0.993;1.000;0.993;1.000;
1.000;0.991;1.000;1.000;0.995;1.000;1.000;
1.000;1.000;1.000;1.000;0.992;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.3.1.15
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
InterPro :
IPR002123 : Phospholipid/glycerol acyltransferase
IPR022284 : Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase
GO :
0008152 : Biological Process : metabolic process
0008374 : Molecular Function : O-acyltransferase activity
0016746 : Molecular Function : transferase activity, transferring acyl groups
0044255 : Biological Process : cellular lipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11, cyto_nucl 8.83333, E.R. 7, cyto_mito 6.66667,
nucl 5.5, pero 4.5, mito_pero 3.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009205)
HIX0009205
HIT000009026
(
AK025752
)
(Conserved hypothetical protein.)
genome : 113,909,623 - 113,911,824 (2,202)
query : 7 - 2,207 (2,201/2,224)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 3, nucl 2, mito 2, mito_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009205)
HIX0009205
HIT000307611 (
ENST00000348367
)
(Glycerol-3-phosphate acyltransferase 1, mitochondrial; GPAT-1; EC=2.3.1.15; Precursor;)
genome : 113,909,624 - 113,943,521 (33,898)
query : 1 - 6,369 (6,369/6,369)
22 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.3.1.15
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11, cyto_nucl 8.83333, E.R. 7, cyto_mito 6.66667,
nucl 5.5, pero 4.5, mito_pero 3.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009205)
HIX0009205
HIT000001275
(
AB046780
)
(Glycerol-3-phosphate acyltransferase 1, mitochondrial; GPAT-1; EC=2.3.1.15; Precursor;)
genome : 113,909,624 - 113,933,518 (23,895)
query : 1 - 5,674 (5,674/5,674)
16 exons
identity = 0.999
3'(0.999;1.000;1.000;0.993;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.3.1.15
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 11.5, cyto_mito 8, plas 6, nucl 6, pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009205)
HIX0009205
HIT000521089 (
ENST00000423155
)
(Glycerol-3-phosphate acyltransferase 1, mitochondrial; GPAT-1; EC=2.3.1.15; Precursor;)
genome : 113,909,637 - 113,943,525 (33,889)
query : 1 - 6,356 (6,356/6,356)
22 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.3.1.15
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11, cyto_nucl 8.83333, E.R. 7, cyto_mito 6.66667,
nucl 5.5, pero 4.5, mito_pero 3.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009205)
HIX0009205
HIT000056098
(
BX647451
)
Representative transcript
(Glycerol-3-phosphate acyltransferase 1, mitochondrial; GPAT-1; EC=2.3.1.15; Precursor;)
genome : 113,910,883 - 113,943,501 (32,619)
query : 1 - 5,090 (5,090/5,107)
22 exons
identity = 0.999
3'(0.999;1.000;0.995;0.993;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.3.1.15
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
InterPro :
IPR002123 : Phospholipid/glycerol acyltransferase
IPR022284 : Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase
GO :
0008152 : Biological Process : metabolic process
0008374 : Molecular Function : O-acyltransferase activity
0016746 : Molecular Function : transferase activity, transferring acyl groups
0044255 : Biological Process : cellular lipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11, cyto_nucl 8.83333, E.R. 7, cyto_mito 6.66667,
nucl 5.5, pero 4.5, mito_pero 3.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009205)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AF021348
Bos
sp. (Cow) : AY515690
Macaca
sp. (Macaque) : ENSMMUT00000010528
Oryzias
sp. (Medaka) : ENSORLT00000005573
Tetraodon
sp. (Tetraodon) : GSTENT00008773001
Mus
sp. (Mouse) : M77003
Takifugu
sp. (Fugu) : SINFRUT00000157654
Pan
sp. (Chimpanzee) : XM_001145520
Monodelphis
sp. (Opossum) : XM_001368418
Equus
sp. (Horse) : XM_001496479
Gallus
sp. (Chicken) : XM_421757
Canis
sp. (Dog) : XM_544020
HIX0009205
HIT000028005
(
AL833093
)
(Glycerol-3-phosphate acyltransferase 1, mitochondrial; GPAT-1; EC=2.3.1.15; Precursor;)
genome : 113,911,095 - 113,943,521 (32,427)
query : 2 - 4,899 (4,898/4,918)
22 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;0.987;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.990;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.3.1.15
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
InterPro :
IPR002123 : Phospholipid/glycerol acyltransferase
IPR022284 : Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase
GO :
0008152 : Biological Process : metabolic process
0008374 : Molecular Function : O-acyltransferase activity
0016746 : Molecular Function : transferase activity, transferring acyl groups
0044255 : Biological Process : cellular lipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11, cyto_nucl 8.83333, E.R. 7, cyto_mito 6.66667,
nucl 5.5, pero 4.5, mito_pero 3.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009205)
HIX0009205
HIT000249945
(
AK172782
)
(Glycerol-3-phosphate acyltransferase 1, mitochondrial; GPAT-1; EC=2.3.1.15; Precursor;)
genome : 113,912,159 - 113,924,356 (12,198)
query : 1 - 2,402 (2,402/2,468)
10 exons
identity = 0.997
3'(0.996;1.000;1.000;0.993;1.000;1.000;1.000;
1.000;1.000;0.986)5'
coverage = 0.981
EC number :
EC 2.3.1.15
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
InterPro :
IPR022284 : Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase
GO :
0008374 : Molecular Function : O-acyltransferase activity
0044255 : Biological Process : cellular lipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, plas 8, cyto 3, lyso 3, nucl 2, mito 2,
cyto_pero 2, mito_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009205)
HIX0009205
HIT000041131
(
BC030783
)
(Glycerol-3-phosphate acyltransferase 1, mitochondrial; GPAT-1; EC=2.3.1.15; Precursor;)
genome : 113,912,502 - 113,943,500 (30,999)
query : 3 - 3,471 (3,469/3,490)
22 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.986;1.000;0.992;1.000;
0.980)5'
coverage = 0.999
EC number :
EC 2.3.1.15
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
InterPro :
IPR002123 : Phospholipid/glycerol acyltransferase
IPR022284 : Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase
GO :
0008152 : Biological Process : metabolic process
0008374 : Molecular Function : O-acyltransferase activity
0016746 : Molecular Function : transferase activity, transferring acyl groups
0044255 : Biological Process : cellular lipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11, cyto_nucl 8.83333, E.R. 7, cyto_mito 6.66667,
nucl 5.5, pero 4.5, mito_pero 3.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009205)
HIX0009205
HIT000249962
(
AK172799
)
(Glycerol-3-phosphate acyltransferase 1, mitochondrial; GPAT-1; EC=2.3.1.15; Precursor;)
genome : 113,913,004 - 113,941,573 (28,570)
query : 13 - 2,832 (2,820/2,855)
20 exons
identity = 0.997
3'(0.986;1.000;1.000;0.993;1.000;1.000;1.000;
1.000;1.000;1.000;0.991;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.992;1.000)5'
coverage = 0.995
EC number :
EC 2.3.1.15
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
InterPro :
IPR002123 : Phospholipid/glycerol acyltransferase
IPR022284 : Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase
GO :
0008152 : Biological Process : metabolic process
0008374 : Molecular Function : O-acyltransferase activity
0016746 : Molecular Function : transferase activity, transferring acyl groups
0044255 : Biological Process : cellular lipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11, cyto_nucl 8.83333, E.R. 7, cyto_mito 6.66667,
nucl 5.5, pero 4.5, mito_pero 3.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009205)
HIX0009205
HIT000027376
(
AL832464
)
(Glycerol-3-phosphate acyltransferase 1, mitochondrial; GPAT-1; EC=2.3.1.15; Precursor;)
genome : 113,913,640 - 113,943,468 (29,829)
query : 3 - 5,660 (5,658/5,689)
19 exons
identity = 0.996
3'(0.995;0.987;0.993;1.000;1.000;1.000;0.988;
1.000;1.000;1.000;0.993;1.000;1.000;0.991;
1.000;0.992;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.3.1.15
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
InterPro :
IPR002123 : Phospholipid/glycerol acyltransferase
IPR022284 : Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase
GO :
0008152 : Biological Process : metabolic process
0008374 : Molecular Function : O-acyltransferase activity
0016746 : Molecular Function : transferase activity, transferring acyl groups
0044255 : Biological Process : cellular lipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14, nucl 5, E.R. 5, pero 4, plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009205)
HIX0009205
HIT000350705 (
ENST00000369425
)
(Glycerol-3-phosphate acyltransferase 1, mitochondrial; GPAT-1; EC=2.3.1.15; Precursor;)
genome : 113,913,640 - 113,943,468 (29,829)
query : 1 - 5,652 (5,652/5,664)
19 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.3.1.15
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14, E.R. 6, nucl 5, pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009205)
HIX0009205
HIT000584163 (
ENST00000480130
)
(Glycerol-3-phosphate acyltransferase 1, mitochondrial; GPAT-1; EC=2.3.1.15; Precursor;)
genome : 113,940,279 - 113,975,135 (34,857)
query : 1 - 514 (514/514)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.3.1.15
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 10, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009205)
HIX0009205
HIT000601760 (
ENST00000498541
)
(Glycerol-3-phosphate acyltransferase 1, mitochondrial; GPAT-1; EC=2.3.1.15; Precursor;)
genome : 113,940,310 - 113,974,154 (33,845)
query : 1 - 351 (351/351)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.3.1.15
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, nucl 9.5, cyto_nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009205)
HIX0035336
HIT000386950
(
BC113497
)
Representative transcript
(Beta-tectorin precursor.)
genome : 114,043,414 - 114,063,107 (19,694)
query : 1 - 1,106 (1,106/1,106)
10 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.990;1.000;1.000;
0.986;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001507 : Zona pellucida domain
IPR017977 : Zona pellucida domain, conserved site
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035336)
Ortholog candidate ( ->
Evola
)
Bos
sp. (Cow) : BC134500
Equus
sp. (Horse) : ENSECAT00000010090
Oryzias
sp. (Medaka) : ENSORLT00000014651
Pongo
sp. (Orangutan) : ENSPPYT00000003198
Rattus
sp. (Rat) : ENSRNOT00000021041
Tetraodon
sp. (Tetraodon) : GSTENT00026943001
Gallus
sp. (Chicken) : L38519
Takifugu
sp. (Fugu) : SINFRUT00000164578
Mus
sp. (Mouse) : X99806
Macaca
sp. (Macaque) : XM_001088216
Monodelphis
sp. (Opossum) : XM_001377931
Pan
sp. (Chimpanzee) : XM_521604
Canis
sp. (Dog) : XM_544021
HIX0035336
HIT000386952
(
BC113499
)
(Beta-tectorin precursor.)
genome : 114,043,414 - 114,063,103 (19,690)
query : 1 - 1,102 (1,102/1,102)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001507 : Zona pellucida domain
IPR017977 : Zona pellucida domain, conserved site
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035336)
HIX0035336
HIT000350702 (
ENST00000369422
)
(Beta-tectorin precursor.)
genome : 114,043,493 - 114,064,793 (21,301)
query : 1 - 2,713 (2,713/2,713)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035336)
HIX0035336
HIT000077072
(
AF312827
)
(Beta-tectorin precursor.)
genome : 114,043,493 - 114,063,070 (19,578)
query : 1 - 990 (990/990)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001507 : Zona pellucida domain
IPR017977 : Zona pellucida domain, conserved site
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035336)
HIX0035336
HIT000211729 (
NM_058222
)
(Beta-tectorin precursor.)
genome : 114,043,493 - 114,063,070 (19,578)
query : 1 - 990 (990/990)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 2, lyso 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035336)
HIX0035336
HIT000597728 (
ENST00000494328
)
(Hypothetical short protein.)
genome : 114,059,249 - 114,062,238 (2,990)
query : 21 - 350 (330/350)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.943
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 11.5, mito 8, extr 5, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035336)
HIX0209347
HIT000657737 (
NR_028134
)
(Extracellular ligand-binding receptor domain containing protein.)
genome : 114,067,936 - 114,116,353 (48,418)
query : 1 - 2,974 (2,974/2,974)
19 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10, nucl 7, cyto_plas 7, plas 4, mito_nucl 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209347)
HIX0209347
HIT000583752 (
ENST00000479705
)
(Serine-threonine/tyrosine-protein kinase catalytic domain containing protein.)
genome : 114,067,939 - 114,116,332 (48,394)
query : 1 - 3,222 (3,222/3,222)
21 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.994;1.000;0.923;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, cyto_nucl 15, cyto 9, mito 2, lyso 2, cysk 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209347)
HIX0209347
HIT000593837 (
ENST00000490269
)
(Serine-threonine/tyrosine-protein kinase catalytic domain containing protein.)
genome : 114,067,977 - 114,098,857 (30,881)
query : 1 - 1,400 (1,400/1,400)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15.5, nucl 13, cyto 12, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209347)
HIX0209509
pHIT000109502 ( pHIT000109502 )
Representative transcript
(Conserved hypothetical protein.)
genome : 112,837,755 - 112,865,009 (27,255)
query : 1 - 1,689 (1,689/1,689)
4 exons
InterPro :
IPR001946 : Alpha 2A adrenoceptor
IPR002233 : Adrenoceptor family
IPR019034 : Uncharacterised protein family UPF0390
GO :
0004935 : Molecular Function : adrenergic receptor activity
0004938 : Molecular Function : alpha2-adrenergic receptor activity
0006940 : Biological Process : regulation of smooth muscle contraction
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
0019229 : Biological Process : regulation of vasoconstriction
0030168 : Biological Process : platelet activation
SOSUI :
MEMBRANE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209509)
CAGE tag :
T10F06B99984
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK140461
Danio
sp. (Zebrafish) : BC117636
Oryzias
sp. (Medaka) : ENSORLT00000019202
Tetraodon
sp. (Tetraodon) : GSTENT00020015001
Macaca
sp. (Macaque) : XM_001087738
Monodelphis
sp. (Opossum) : XM_001378014
Pan
sp. (Chimpanzee) : XM_521603
HIX0209509
pHIT000109502 ( pHIT000109502 )
Representative transcript
(Conserved hypothetical protein.)
genome : 112,837,755 - 112,865,009 (27,255)
query : 1 - 1,689 (1,689/1,689)
4 exons
InterPro :
IPR001946 : Alpha 2A adrenoceptor
IPR002233 : Adrenoceptor family
IPR019034 : Uncharacterised protein family UPF0390
GO :
0004935 : Molecular Function : adrenergic receptor activity
0004938 : Molecular Function : alpha2-adrenergic receptor activity
0006940 : Biological Process : regulation of smooth muscle contraction
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
0019229 : Biological Process : regulation of vasoconstriction
0030168 : Biological Process : platelet activation
SOSUI :
MEMBRANE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209509)
CAGE tag :
T10F06B99984
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK140461
Danio
sp. (Zebrafish) : BC117636
Oryzias
sp. (Medaka) : ENSORLT00000019202
Tetraodon
sp. (Tetraodon) : GSTENT00020015001
Macaca
sp. (Macaque) : XM_001087738
Monodelphis
sp. (Opossum) : XM_001378014
Pan
sp. (Chimpanzee) : XM_521603
HIX0009205
pHIT000018234 ( pHIT000018234 )
(Glycerol-3-phosphate acyltransferase 1, mitochondrial; GPAT-1; EC=2.3.1.15; Precursor;)
genome : 113,907,981 - 113,987,337 (79,357)
query : 1 - 2,466 (2,466/2,466)
20 exons
EC number :
EC 2.3.1.15
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
InterPro :
IPR002123 : Phospholipid/glycerol acyltransferase
GO :
0008152 : Biological Process : metabolic process
0016746 : Molecular Function : transferase activity, transferring acyl groups
SOSUI :
MEMBRANE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0009205)
CAGE tag :
H21BA38L1813,H21BA56J2009,H21BA58H0305
H21BB11J0808,H21BB72H1108
AL512508.8
112500001-112508382 F +
NCBI
AL136368.24
112508383-112644230 F +
NCBI
AL158163.11
112644231-112847138 F +
NCBI
AL355863.18
112847139-112997349 F +
NCBI
AC021035.8
112997350-113146946 F -
NCBI
AL670843.7
113146947-113167773 F +
NCBI
AL607043.12
113167774-113335614 F +
NCBI
AL356141.9
113335615-113421485 F +
NCBI
AL356772.14
113421486-113583346 F +
NCBI
AL136119.16
113583347-113672926 F +
NCBI
AL392167.7
113672927-113862696 F +
NCBI
AL359395.16
113862697-113872109 F +
NCBI
AL391986.12
113872110-114066766 F +
NCBI
AL157786.13
114066767-114100000 F +
NCBI