bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0026558
HIT000320366 (
NM_207361
)
(FRAS1-related extracellular matrix protein 2; ECM3 homolog; Precursor;)
genome : 39,261,173 - 39,461,266 (200,094)
query : 1 - 16,161 (16,161/16,179)
24 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 22, E.R. 4, cyto 2, lyso 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026558)
HIX0026558
HIT000111959 (
ENST00000280481
)
(FRAS1-related extracellular matrix protein 2; ECM3 homolog; Precursor;)
genome : 39,261,266 - 39,460,074 (198,809)
query : 1 - 14,876 (14,876/14,876)
24 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 22, E.R. 4, cyto 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026558)
HIX0026558
HIT000047444
(
AK127571
)
(FRAS1-related extracellular matrix protein 2; ECM3 homolog; Precursor;)
genome : 39,343,748 - 39,439,063 (95,316)
query : 1 - 2,860 (2,860/2,873)
13 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.990;1.000;1.000;
1.000;0.992;1.000;1.000;0.992;0.998)3'
coverage = 1.000
InterPro :
IPR003644 : Na-Ca exchanger/integrin-beta4
GO :
0007154 : Biological Process : cell communication
0016021 : Cellular Component : integral component of membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, cyto 14, nucl 13, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026558)
HIX0026558
HIT000055086
(
BX538304
)
Representative transcript
(FRAS1-related extracellular matrix protein 2; ECM3 homolog; Precursor;)
genome : 39,357,293 - 39,460,073 (102,781)
query : 1 - 8,933 (8,933/8,951)
20 exons
identity = 0.998
5'(1.000;1.000;0.993;0.990;0.990;1.000;0.995;
0.992;0.994;0.997;1.000;1.000;0.995;1.000;
1.000;1.000;1.000;1.000;0.993;0.998)3'
coverage = 1.000
InterPro :
IPR003644 : Na-Ca exchanger/integrin-beta4
GO :
0007154 : Biological Process : cell communication
0016021 : Cellular Component : integral component of membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 12.5, nucl 5.5, plas 3, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026558)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AB236662
Gallus
sp. (Chicken) : CR389364
Oryzias
sp. (Medaka) : ENSORLT00000004388
Pongo
sp. (Orangutan) : ENSPPYT00000006271
Tetraodon
sp. (Tetraodon) : GSTENT00007660001
Tetraodon
sp. (Tetraodon) : GSTENT00018879001
Takifugu
sp. (Fugu) : SINFRUT00000129630
Takifugu
sp. (Fugu) : SINFRUT00000165166
Macaca
sp. (Macaque) : XM_001086486
Bos
sp. (Cow) : XM_001253637
Monodelphis
sp. (Opossum) : XM_001377763
Equus
sp. (Horse) : XM_001915694
Danio
sp. (Zebrafish) : XM_001920789
Rattus
sp. (Rat) : XM_227142
Pan
sp. (Chimpanzee) : XM_522664
Canis
sp. (Dog) : XM_543127
Danio
sp. (Zebrafish) : XM_678271
HIX0171915
HIT000474294 (
ENST00000390760
)
(Hypothetical short protein.)
genome : 39,364,781 - 39,364,891 (111)
query : 1 - 111 (111/111)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
This sequence is too short.
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171915)
HIX0026558
HIT000586476 (
ENST00000482551
)
(FRAS1-related extracellular matrix protein 2; ECM3 homolog; NV domain-containing protein 1; Precursor;)
genome : 39,395,833 - 39,424,372 (28,540)
query : 1 - 711 (711/711)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, cyto 12.5, nucl 11.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026558)
HIX0172247
HIT000546821 (
ENST00000448887
)
(Hypothetical short protein.)
genome : 39,395,935 - 39,401,707 (5,773)
query : 1 - 465 (465/465)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, extr 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172247)
HIX0026558
HIT000306878
(
CR933724
)
(FRAS1-related extracellular matrix protein 2; ECM3 homolog; Precursor;)
genome : 39,433,406 - 39,460,073 (26,668)
query : 2 - 7,460 (7,459/7,478)
11 exons
identity = 0.998
5'(0.978;1.000;1.000;1.000;1.000;0.992;1.000;
1.000;1.000;1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 9, nucl 8.5, cyto 8.5, plas 4, pero 4,
mito 3, E.R. 3, E.R._mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026558)
HIX0211149
HIT000047506
(
AK127633
)
Representative transcript
(FRAS1-related extracellular matrix protein 2; ECM3 homolog; Precursor;)
genome : 39,438,385 - 39,440,469 (2,085)
query : 1 - 1,991 (1,991/1,991)
2 exons
identity = 0.998
3'(1.000;0.996)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 6, cyto 3, mito_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211149)
HIX0026558
HIT000054932_03
(
BX538150
)
(FRAS1-related extracellular matrix protein 2; ECM3 homolog; Precursor;)
genome : 39,448,667 - 39,460,073 (11,407)
query : 1 - 6,434 (6,434/6,452)
7 exons
identity = 0.998
5'(1.000;0.992;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10, mito_pero 5.83333, E.R._mito 5.16667, pero 5,
plas 4.5, nucl 4, mito 4, extr_plas 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026558)
HIX0026558
HIT000055235
(
BX640686
)
(FRAS1-related extracellular matrix protein 2; ECM3 homolog; Precursor;)
genome : 39,451,264 - 39,461,266 (10,003)
query : 1 - 7,297 (7,297/7,315)
4 exons
identity = 0.998
5'(1.000;1.000;0.993;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, nucl 6, pero 5, plas 4, mito_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026558)
HIX0172048
HIT000522678 (
ENST00000424744
)
(Phospholipase A2, group XII secretory family protein.)
genome : 39,476,524 - 39,476,787 (264)
query : 1 - 264 (264/264)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 9, mito 7, extr_plas 7,
cyto_nucl 5.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172048)
HIX0172216
HIT000543464 (
ENST00000445530
)
(Conserved hypothetical protein.)
genome : 39,496,864 - 39,510,336 (13,473)
query : 1 - 1,710 (1,710/1,710)
7 exons
identity = 0.985
3'(1.000;1.000;0.926;0.995;0.992;0.915;0.966)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 11.5, extr 7, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172216)
HIX0201998
HIT000040009
(
BC025760
)
Representative transcript
(Stomatin-like protein 3 isoform 1.)
genome : 39,540,062 - 39,564,983 (24,922)
query : 1 - 1,900 (1,900/1,954)
7 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001107 : Band 7 protein
IPR001972 : Stomatin family
IPR018080 : Band 7/stomatin-like, conserved site
IPR028519 : Stomatin-like protein 3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201998)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC058224
Danio
sp. (Zebrafish) : BC092792
Bos
sp. (Cow) : BT021609
Tetraodon
sp. (Tetraodon) : CR675416
Oryzias
sp. (Medaka) : ENSORLT00000015482
Pongo
sp. (Orangutan) : ENSPPYT00000006272
Takifugu
sp. (Fugu) : SINFRUT00000181288
Rattus
sp. (Rat) : XM_001057453
Macaca
sp. (Macaque) : XM_001086610
Pan
sp. (Chimpanzee) : XM_001146658
Monodelphis
sp. (Opossum) : XM_001377781
Equus
sp. (Horse) : XM_001496645
Gallus
sp. (Chicken) : XM_425632
Canis
sp. (Dog) : XM_543126
HIX0201998
HIT000213191 (
NM_145286
)
(Stomatin-like protein 3 isoform 1.)
genome : 39,540,062 - 39,564,996 (24,935)
query : 1 - 1,914 (1,914/1,936)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201998)
HIX0201998
HIT000560965 (
NM_001144033
)
(Stomatin-like protein 3 isoform 2.)
genome : 39,540,062 - 39,564,996 (24,935)
query : 1 - 1,998 (1,998/2,020)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 23, E.R. 3, pero 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201998)
HIX0201998
HIT000360910 (
ENST00000379631
)
(Stomatin-like protein 3 isoform 1.)
genome : 39,540,062 - 39,565,203 (25,142)
query : 1 - 2,121 (2,121/2,121)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201998)
HIX0201998
HIT000521144 (
ENST00000423210
)
(Stomatin-like protein 3 isoform 2.)
genome : 39,540,063 - 39,564,996 (24,934)
query : 1 - 1,997 (1,997/1,997)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 23, E.R. 3, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201998)
HIX0201998
HIT000498783
(
AK304159
)
(Stomatin-like protein 3 isoform 2.)
genome : 39,540,849 - 39,564,996 (24,148)
query : 1 - 1,211 (1,211/1,211)
8 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.995)5'
coverage = 1.000
InterPro :
IPR001107 : Band 7 protein
IPR001972 : Stomatin family
IPR018080 : Band 7/stomatin-like, conserved site
IPR028519 : Stomatin-like protein 3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 23, E.R. 3, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201998)
HIX0201998
HIT000432498
(
AK313632
)
(Stomatin-like protein 3 isoform 1.)
genome : 39,540,962 - 39,564,968 (24,007)
query : 1 - 986 (986/986)
7 exons
identity = 0.998
3'(0.996;1.000;1.000;0.988;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001107 : Band 7 protein
IPR001972 : Stomatin family
IPR018080 : Band 7/stomatin-like, conserved site
IPR028519 : Stomatin-like protein 3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201998)
HIX0011252
HIT000588285 (
ENST00000484434
)
(Conserved hypothetical protein.)
genome : 39,584,002 - 39,598,067 (14,066)
query : 1 - 2,482 (2,482/2,482)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto_nucl 4.5, cyto 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011252)
HIX0011252
HIT000028727
(
AL833854
)
(Conserved hypothetical protein.)
genome : 39,584,289 - 39,587,949 (3,661)
query : 1 - 2,609 (2,609/2,635)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16.5, cyto_mito 10.8333, cyto_nucl 4.83333,
nucl 4.5, extr 4, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011252)
HIX0011252
HIT000007582
(
AK024308
)
(Proline and serine-rich protein 1;)
genome : 39,584,290 - 39,598,072 (13,783)
query : 1 - 2,150 (2,150/2,150)
3 exons
identity = 0.997
3'(0.996;1.000;0.999)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, cyto 10, nucl 5, cyto_pero 5, cyto_plas 5,
cyto_golg 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011252)
HIX0011252
HIT000097309
(
BC042652
)
(Conserved hypothetical protein.)
genome : 39,585,284 - 39,588,595 (3,312)
query : 1 - 2,260 (2,260/2,372)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, cyto_nucl 10.5, nucl 10, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011252)
HIX0011252
HIT000259286
(
BC053566
)
Representative transcript
(Proline and serine-rich protein 1;)
genome : 39,585,280 - 39,598,686 (13,407)
query : 1 - 2,570 (2,570/2,616)
7 exons
identity = 0.998
3'(1.000;0.993;0.998;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 16.5, cyto 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011252)
HIX0011252
HIT000029165
(
AL834435
)
(Conserved hypothetical protein.)
genome : 39,585,284 - 39,587,438 (2,155)
query : 1 - 1,103 (1,103/1,134)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, mito 11, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011252)
HIX0011252
HIT000572601 (
ENST00000468017
)
(Conserved hypothetical protein.)
genome : 39,585,277 - 39,586,915 (1,639)
query : 1 - 437 (437/437)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto_nucl 7.5, nucl 7, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011252)
HIX0011252
HIT000005997
(
AK022723
)
(Proline and serine-rich protein 1;)
genome : 39,585,281 - 39,598,683 (13,403)
query : 1 - 2,566 (2,566/2,566)
7 exons
identity = 0.997
3'(1.000;0.993;0.996;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 16, cyto 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011252)
HIX0011252
HIT000596122 (
ENST00000492646
)
(Conserved hypothetical protein.)
genome : 39,585,513 - 39,586,612 (1,100)
query : 1 - 505 (505/505)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011252)
HIX0011252
HIT000714245 (
ENST00000602512
)
(Conserved hypothetical protein.)
genome : 39,588,507 - 39,596,879 (8,373)
query : 1 - 569 (569/569)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 7, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011252)
HIX0011252
HIT000714632 (
ENST00000602899
)
(Conserved hypothetical protein.)
genome : 39,588,540 - 39,592,136 (3,597)
query : 1 - 574 (574/574)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15.5, nucl 14, cyto 11, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011252)
HIX0011252
HIT000599474 (
ENST00000496138
)
(Conserved hypothetical protein.)
genome : 39,596,491 - 39,600,609 (4,119)
query : 1 - 418 (418/418)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 7.5, cyto_nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011252)
HIX0011252
HIT000534612 (
ENST00000436678
)
(Domain of unknown function DUF4476 domain containing protein.)
genome : 39,598,640 - 39,605,846 (7,207)
query : 1 - 501 (501/501)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011252)
HIX0011252
HIT000516437 (
ENST00000418503
)
(Domain of unknown function DUF4476 domain containing protein.)
genome : 39,602,364 - 39,611,974 (9,611)
query : 1 - 898 (898/898)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_plas 13, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011252)
HIX0011252
HIT000714267 (
ENST00000602534
)
(Domain of unknown function DUF4476 domain containing protein.)
genome : 39,603,169 - 39,611,431 (8,263)
query : 1 - 576 (576/576)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, cyto 13, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011252)
HIX0220760
HIT000028241
(
AL833329
)
Representative transcript
(Six-bladed beta-propeller, TolB-like domain containing protein.)
genome : 39,612,443 - 39,615,954 (3,512)
query : 1 - 3,217 (3,217/3,234)
2 exons
identity = 0.989
5'(1.000;0.984)3'
coverage = 1.000
InterPro :
IPR011042 : Six-bladed beta-propeller, TolB-like
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, mito 1, E.R. 1, pero 1, lyso 1, golg 1,
E.R._mito 1, mito_pero 1, E.R._golg 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220760)
HIX0220760
HIT000577705 (
ENST00000473371
)
(Six-bladed beta-propeller, TolB-like domain containing protein.)
genome : 39,612,443 - 39,615,954 (3,512)
query : 1 - 3,237 (3,237/3,237)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, mito 1, E.R. 1, pero 1, lyso 1, golg 1,
E.R._mito 1, mito_pero 1, E.R._golg 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220760)
HIX0220854
HIT000589212 (
ENST00000485407
)
(Six-bladed beta-propeller, TolB-like domain containing protein.)
genome : 39,616,195 - 39,618,601 (2,407)
query : 1 - 623 (623/623)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 17, extr 7, cyto 3, mito 2.5, E.R._mito 2,
cyto_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220854)
HIX0131017
HIT000556415 (
ENST00000458481
)
(Nuclear transport factor 2 domain containing protein.)
genome : 39,743,773 - 39,744,088 (316)
query : 1 - 316 (316/316)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 10.5, cyto 8, nucl 7, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0131017)
HIX0021151
HIT000202443 (
NM_005780
)
(Lipoma HMGIC fusion partner; Precursor;)
genome : 39,917,029 - 40,177,356 (260,328)
query : 1 - 2,158 (2,158/2,180)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;0.997)5'
coverage = 1.000
EC number :
EC 3.6.5.4
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, extr 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021151)
HIX0021151
HIT000331149
(
AK223369
)
(Lipoma HMGIC fusion partner; Precursor;)
genome : 39,917,029 - 40,177,308 (260,280)
query : 1 - 1,654 (1,654/1,676)
4 exons
identity = 0.995
3'(0.993;1.000;1.000;0.997)5'
coverage = 1.000
InterPro :
IPR019372 : Lipoma HMGIC fusion partner-like protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 21, mito 4, nucl 2, cyto 2, cyto_nucl 2, lyso 2,
E.R._mito 2, mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021151)
HIX0021151
HIT000068561
(
AF098807
)
Representative transcript
(Lipoma HMGIC fusion partner; Precursor;)
genome : 39,917,029 - 40,177,201 (260,173)
query : 1 - 1,997 (1,997/2,012)
4 exons
identity = 0.996
3'(0.994;1.000;1.000;0.995)5'
coverage = 1.000
InterPro :
IPR019372 : Lipoma HMGIC fusion partner-like protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021151)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC052079
Rattus
sp. (Rat) : BC091355
Bos
sp. (Cow) : BC120189
Gallus
sp. (Chicken) : CR406772
Oryzias
sp. (Medaka) : ENSORLT00000003772
Pongo
sp. (Orangutan) : ENSPPYT00000006275
Tetraodon
sp. (Tetraodon) : GSTENT00035223001
Takifugu
sp. (Fugu) : SINFRUT00000151059
Macaca
sp. (Macaque) : XM_001088047
Pan
sp. (Chimpanzee) : XM_001147653
Danio
sp. (Zebrafish) : XM_001332126
Monodelphis
sp. (Opossum) : XM_001368159
Equus
sp. (Horse) : XM_001916675
Canis
sp. (Dog) : XM_543123
HIX0021151
HIT000025676
(
AL137388
)
(Conserved hypothetical protein.)
genome : 39,917,029 - 39,917,857 (829)
query : 1 - 825 (825/831)
1 exon
identity = 0.995
3'(0.995)5'
coverage = 0.993
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 11, cyto 10.5, cyto_nucl 9.5, nucl 5.5,
extr_plas 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021151)
HIX0021151
HIT000360868 (
ENST00000379589
)
(Lipoma HMGIC fusion partner; Precursor;)
genome : 39,917,029 - 40,177,308 (260,280)
query : 1 - 2,110 (2,110/2,110)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, extr 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021151)
HIX0021151
HIT000049090
(
AK129819
)
(Lipoma HMGIC fusion partner; Precursor;)
genome : 39,917,030 - 40,177,308 (260,279)
query : 1 - 1,653 (1,653/1,653)
4 exons
identity = 0.995
3'(0.993;1.000;1.000;0.997)5'
coverage = 1.000
InterPro :
IPR019372 : Lipoma HMGIC fusion partner-like protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 21, mito 4, nucl 2, cyto 2, cyto_nucl 2, lyso 2,
E.R._mito 2, mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021151)
HIX0021151
HIT000038151
(
BC017824
)
(Lipoma HMGIC fusion partner; Precursor;)
genome : 39,917,862 - 40,177,204 (259,343)
query : 1 - 1,173 (1,173/1,201)
4 exons
identity = 0.998
3'(0.997;1.000;1.000;0.995)5'
coverage = 1.000
InterPro :
IPR019372 : Lipoma HMGIC fusion partner-like protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021151)
HIX0021151
HIT000431902
(
AK313036
)
(Lipoma HMGIC fusion partner; Precursor;)
genome : 39,918,073 - 40,177,308 (259,236)
query : 1 - 1,066 (1,066/1,066)
4 exons
identity = 0.998
3'(1.000;1.000;0.998;0.997)5'
coverage = 1.000
InterPro :
IPR019372 : Lipoma HMGIC fusion partner-like protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021151)
HIX0037436
HIT000080284
(
AF463496
)
Representative transcript
(Conserved hypothetical protein.)
genome : 40,015,303 - 40,015,941 (639)
query : 1 - 639 (639/661)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 14, mito 5.5, E.R._mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037436)
HIX0193082
pHIT000023104 ( pHIT000023104 )
Representative transcript
(Hypothetical short protein.)
genome : 40,094,815 - 40,108,367 (13,553)
query : 1 - 225 (225/225)
3 exons
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0193082)
CAGE tag :
H05BB07I1703
HIX0011254
HIT000057796
(
BX649149
)
Representative transcript
(Conserved hypothetical protein.)
genome : 40,100,013 - 40,107,936 (7,924)
query : 1 - 7,915 (7,915/7,933)
1 exon
identity = 0.995
3'(0.995)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 14.5, cyto 8, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011254)
HIX0011254
HIT000328486
(
AB073899
)
(Hypothetical short protein.)
genome : 40,100,016 - 40,103,059 (3,044)
query : 1 - 3,044 (3,044/3,044)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011254)
HIX0011254
HIT000005251
(
AK021977
)
(Hypothetical short protein.)
genome : 40,100,021 - 40,101,841 (1,821)
query : 1 - 1,820 (1,820/1,820)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 6.5, cyto_nucl 5.66667,
cyto_pero 4.83333, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011254)
HIX0011255
HIT000007373
(
AK024099
)
Representative transcript
(Conserved hypothetical protein.)
genome : 40,134,051 - 40,135,590 (1,540)
query : 1 - 1,540 (1,540/1,540)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 15, extr 14
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011255)
HIX0011255
HIT000262951
(
BC068092
)
(Conserved hypothetical protein.)
genome : 40,134,661 - 40,135,303 (643)
query : 1 - 634 (634/653)
1 exon
identity = 0.986
3'(0.986)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 7.5, cyto_nucl 5.5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011255)
HIX0037500
HIT000094506
(
BC036605
)
Representative transcript
(Conserved hypothetical protein.)
genome : 40,148,022 - 40,151,173 (3,152)
query : 1 - 3,151 (3,151/3,165)
1 exon
identity = 0.995
3'(0.995)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 2.5, cyto_nucl 2.5, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037500)
HIX0021151
HIT000599270 (
ENST00000495922
)
(Hypothetical short protein.)
genome : 40,175,450 - 40,177,665 (2,216)
query : 1 - 446 (446/446)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021151)
HIX0011256
HIT000514625 (
ENST00000416691
)
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,229,764 - 40,365,802 (136,039)
query : 1 - 5,257 (5,257/5,257)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29.5, cyto_mito 16
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0011256
HIT000561167 (
NM_001145079
)
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,229,764 - 40,365,802 (136,039)
query : 1 - 5,257 (5,257/5,257)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29.5, cyto_mito 16
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0011256
HIT000317450 (
NM_020751
)
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,229,764 - 40,326,765 (97,002)
query : 1 - 3,609 (3,609/3,627)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0011256
HIT000562932 (
NR_026745
)
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,229,764 - 40,326,765 (97,002)
query : 1 - 3,674 (3,674/3,692)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, nucl 9.5, cyto_mito 9.5, cyto_nucl 9,
cyto 7.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0011256
HIT000489067
(
AK294443
)
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,229,764 - 40,325,319 (95,556)
query : 1 - 2,163 (2,163/2,163)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010490 : Conserved oligomeric Golgi complex subunit 6
GO :
0006891 : Biological Process : intra-Golgi vesicle-mediated transport
0017119 : Cellular Component : Golgi transport complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0011256
HIT000641311 (
ENST00000542266
)
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,229,788 - 40,233,640 (3,853)
query : 1 - 528 (528/528)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto 10, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0011256
HIT000520693 (
ENST00000422759
)
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,229,799 - 40,252,281 (22,483)
query : 1 - 658 (658/658)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, nucl 9, extr 6, cyto_mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0011256
HIT000642849 (
ENST00000543804
)
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,229,799 - 40,251,714 (21,916)
query : 1 - 553 (553/553)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto 10, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0011256
HIT000642835 (
ENST00000543790
)
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,229,799 - 40,233,604 (3,806)
query : 1 - 546 (546/546)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto 10, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0011256
HIT000553080 (
ENST00000455146
)
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,229,814 - 40,326,769 (96,956)
query : 1 - 3,563 (3,563/3,563)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 13, nucl 8, cysk 5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0011256
HIT000053663
(
BC051723
)
Representative transcript
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,229,814 - 40,326,633 (96,820)
query : 1 - 3,427 (3,427/3,442)
19 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.989;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR010490 : Conserved oligomeric Golgi complex subunit 6
GO :
0006891 : Biological Process : intra-Golgi vesicle-mediated transport
0017119 : Cellular Component : Golgi transport complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 13, nucl 8, cysk 5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK031149
Rattus
sp. (Rat) : BC079442
Bos
sp. (Cow) : BC102837
Danio
sp. (Zebrafish) : ENSDART00000102071
Oryzias
sp. (Medaka) : ENSORLT00000003860
Pongo
sp. (Orangutan) : ENSPPYT00000006276
Tetraodon
sp. (Tetraodon) : GSTENT00035221001
Takifugu
sp. (Fugu) : SINFRUT00000151054
Macaca
sp. (Macaque) : XM_001088276
Pan
sp. (Chimpanzee) : XM_001147937
Monodelphis
sp. (Opossum) : XM_001368196
Equus
sp. (Horse) : XM_001487911
Gallus
sp. (Chicken) : XM_417082
Canis
sp. (Dog) : XM_534488
HIX0011256
HIT000306175
(
CR627406
)
(Conserved oligomeric Golgi complex subunit 6 family protein.)
genome : 40,229,823 - 40,326,638 (96,816)
query : 2 - 3,425 (3,424/3,456)
19 exons
identity = 0.997
5'(0.979;1.000;1.000;1.000;0.991;1.000;1.000;
1.000;1.000;1.000;1.000;0.978;1.000;1.000;
1.000;1.000;1.000;1.000;0.997)3'
coverage = 0.999
InterPro :
IPR010490 : Conserved oligomeric Golgi complex subunit 6
GO :
0006891 : Biological Process : intra-Golgi vesicle-mediated transport
0017119 : Cellular Component : Golgi transport complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 14, nucl 8, cysk 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0011256
HIT000310551 (
ENST00000356576
)
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,229,861 - 40,326,637 (96,777)
query : 1 - 3,449 (3,449/3,449)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, nucl 9.5, cyto_mito 9.5, cyto_nucl 9,
cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0011256
HIT000000850
(
AB032960
)
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,229,874 - 40,365,802 (135,929)
query : 1 - 5,148 (5,148/5,148)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, cyto_nucl 12, nucl 10.5, cyto_pero 8.33333,
mito 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0011256
HIT000070067
(
AF116827
)
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,229,881 - 40,326,637 (96,757)
query : 1 - 3,428 (3,428/3,428)
20 exons
identity = 0.998
5'(0.978;1.000;1.000;1.000;0.983;0.991;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR010490 : Conserved oligomeric Golgi complex subunit 6
GO :
0006891 : Biological Process : intra-Golgi vesicle-mediated transport
0017119 : Cellular Component : Golgi transport complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, nucl 9.5, cyto_mito 9.5, cyto_nucl 9,
cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0011256
HIT000635533 (
ENST00000536488
)
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,233,533 - 40,261,683 (28,151)
query : 1 - 564 (564/564)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 10, extr 8, cyto 4.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0011256
HIT000009912
(
AK026638
)
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,233,582 - 40,325,638 (92,057)
query : 2 - 2,150 (2,149/2,170)
18 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.988;1.000;1.000;
1.000;1.000;1.000;0.989;1.000;1.000;1.000;
1.000;1.000;1.000;0.996)3'
coverage = 1.000
InterPro :
IPR010490 : Conserved oligomeric Golgi complex subunit 6
GO :
0006891 : Biological Process : intra-Golgi vesicle-mediated transport
0017119 : Cellular Component : Golgi transport complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 16, cyto 9, cyto_nucl 8, cysk_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0211204
HIT000659453 (
NR_036190
)
(Non-protein coding transcript.)
genome : 40,238,171 - 40,238,272 (102)
query : 1 - 102 (102/102)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211204)
HIX0211204
HIT000695133 (
ENST00000583252
)
(Non-protein coding transcript.)
genome : 40,238,171 - 40,238,272 (102)
query : 1 - 102 (102/102)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211204)
HIX0011256
HIT000636201 (
ENST00000537156
)
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,253,484 - 40,261,730 (8,247)
query : 1 - 530 (530/530)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, mito 11, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0011256
HIT000570460 (
ENST00000465775
)
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,253,733 - 40,256,610 (2,878)
query : 1 - 753 (753/753)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 3, cyto 3, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0011256
HIT000565618 (
ENST00000460701
)
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,261,680 - 40,263,957 (2,278)
query : 1 - 318 (318/318)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11, extr 10, cyto 9.5, nucl 7.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0011256
HIT000429819
(
AK310953
)
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,293,792 - 40,363,245 (69,454)
query : 3 - 1,191 (1,189/1,191)
5 exons
identity = 0.999
5'(0.994;1.000;1.000;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR010490 : Conserved oligomeric Golgi complex subunit 6
GO :
0006891 : Biological Process : intra-Golgi vesicle-mediated transport
0017119 : Cellular Component : Golgi transport complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto 8, cyto_nucl 7.5, extr 6, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0011256
HIT000091342
(
BC027469
)
(Conserved oligomeric Golgi complex subunit 6; COG complex subunit 6; Component of oligomeric Golgi complex 6;)
genome : 40,293,860 - 40,326,638 (32,779)
query : 1 - 1,904 (1,904/1,945)
5 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR010490 : Conserved oligomeric Golgi complex subunit 6
GO :
0006891 : Biological Process : intra-Golgi vesicle-mediated transport
0017119 : Cellular Component : Golgi transport complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cysk 10, cyto_nucl 9, nucl 4.5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011256)
HIX0171993
HIT000516295 (
ENST00000418361
)
(Conserved hypothetical protein.)
genome : 40,391,878 - 40,392,186 (309)
query : 1 - 309 (309/309)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171993)
HIX0131005
HIT000474778 (
ENST00000391251
)
(Non-protein coding transcript.)
genome : 40,431,272 - 40,431,364 (93)
query : 1 - 93 (93/93)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0131005)
HIX0172289
HIT000726852 (
NR_046870
)
(Hypothetical short protein.)
genome : 40,755,946 - 40,763,167 (7,222)
query : 1 - 836 (836/836)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172289)
HIX0172289
HIT000553175 (
ENST00000455241
)
(Hypothetical short protein.)
genome : 40,755,946 - 40,763,165 (7,220)
query : 1 - 834 (834/834)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172289)
HIX0026573
HIT000044256
(
AK124383
)
Representative transcript
(Conserved hypothetical protein.)
genome : 40,768,646 - 40,794,639 (25,994)
query : 1 - 2,551 (2,551/2,551)
6 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, mito 9, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026573)
HIX0026573
HIT000659035 (
NR_033877
)
(Conserved hypothetical protein.)
genome : 40,768,646 - 40,794,639 (25,994)
query : 1 - 2,551 (2,551/2,551)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, mito 9, extr 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026573)
HIX0220893
HIT000209748 (
NM_025138
)
(Proline and serine-rich protein 1;)
genome : 39,584,002 - 39,612,213 (28,212)
query : 1 - 5,169 (5,169/5,185)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 4, extr 2, cyto_plas 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220893)
HIX0220893
HIT000307904 (
ENST00000350125
)
(Proline and serine-rich protein 1;)
genome : 39,584,003 - 39,612,252 (28,250)
query : 1 - 5,141 (5,141/5,141)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 13.5, cyto 5.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220893)
HIX0220893
HIT000042451
(
AB107354
)
Representative transcript
(Proline and serine-rich protein 1;)
genome : 39,584,003 - 39,612,213 (28,211)
query : 1 - 5,168 (5,168/5,168)
13 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR028011 : Domain of unknown function DUF4476
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 4, extr 2, cyto_plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220893)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK034174
Canis
sp. (Dog) : ENSCAFT00000009688
Danio
sp. (Zebrafish) : ENSDART00000079612
Equus
sp. (Horse) : ENSECAT00000018588
Oryzias
sp. (Medaka) : ENSORLT00000005940
Pongo
sp. (Orangutan) : ENSPPYT00000006273
Rattus
sp. (Rat) : XM_001057453
Macaca
sp. (Macaque) : XM_001087439
Monodelphis
sp. (Opossum) : XM_001368123
Gallus
sp. (Chicken) : XM_417085
Pan
sp. (Chimpanzee) : XM_509637
Bos
sp. (Cow) : XM_604162
HIX0220893
HIT000308211 (
ENST00000352251
)
(Proline and serine-rich protein 1;)
genome : 39,584,003 - 39,612,213 (28,211)
query : 1 - 5,168 (5,168/5,168)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 4, extr 2, cyto_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220893)
HIX0220893
HIT000056118
(
BX647471
)
(Proline and serine-rich protein 1;)
genome : 39,584,291 - 39,611,635 (27,345)
query : 1 - 4,302 (4,302/4,319)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;0.989;1.000;1.000;
1.000;1.000;0.989;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR028011 : Domain of unknown function DUF4476
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 4, extr 2, cyto_plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220893)
HIX0220893
HIT000261311
(
BC064348
)
(Proline and serine-rich protein 1;)
genome : 39,584,289 - 39,611,468 (27,180)
query : 1 - 4,137 (4,137/4,151)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR028011 : Domain of unknown function DUF4476
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 4, extr 2, cyto_plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220893)
HIX0220893
HIT000494287
(
AK299663
)
(Proline and serine-rich protein 1;)
genome : 39,585,464 - 39,603,518 (18,055)
query : 5 - 2,703 (2,699/2,703)
10 exons
identity = 0.999
3'(1.000;1.000;0.999;1.000;1.000;1.000;1.000;
1.000;1.000;0.980)5'
coverage = 0.999
InterPro :
IPR028011 : Domain of unknown function DUF4476
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 13, lyso 4, extr 2, cyto 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220893)
HIX0220893
HIT000015140
(
AK074360
)
(Proline and serine-rich protein 1;)
genome : 39,587,177 - 39,612,186 (25,010)
query : 1 - 3,018 (3,018/3,040)
11 exons
identity = 0.998
3'(0.999;1.000;1.000;0.987;1.000;1.000;0.989;
1.000;1.000;1.000;0.999)5'
coverage = 0.998
InterPro :
IPR028011 : Domain of unknown function DUF4476
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 17, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220893)
HIX0022671
HIT000365180 (
NM_001012754
)
(NHL repeat-containing protein 3; Precursor;)
genome : 39,612,448 - 39,624,243 (11,796)
query : 1 - 3,553 (3,553/3,569)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 7.5, mito 7.5, extr_plas 7.5, plas 6.5,
cyto_mito 4.5, golg 4, E.R. 3, lyso 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022671)
HIX0022671
HIT000365466 (
NM_001017370
)
(NHL repeat-containing protein 3; Precursor;)
genome : 39,612,448 - 39,624,243 (11,796)
query : 1 - 3,352 (3,352/3,368)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 9.5, extr 7.5, extr_plas 7, plas 5.5,
cyto_mito 5.5, lyso 4, golg 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022671)
HIX0022671
HIT000727472 (
NR_073109
)
(NHL repeat-containing protein 3; Precursor;)
genome : 39,612,448 - 39,624,243 (11,796)
query : 1 - 3,295 (3,295/3,311)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 28, cyto_nucl 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022671)
HIX0022671
HIT000574742 (
ENST00000470258
)
(NHL repeat-containing protein 3; Precursor;)
genome : 39,612,448 - 39,624,246 (11,799)
query : 1 - 3,298 (3,298/3,298)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 28, cyto_nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022671)
HIX0022671
HIT000360879 (
ENST00000379600
)
(NHL repeat-containing protein 3; Precursor;)
genome : 39,612,455 - 39,624,246 (11,792)
query : 1 - 3,549 (3,549/3,549)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 7.5, mito 7.5, extr_plas 7.5, plas 6.5,
cyto_mito 4.5, golg 4, E.R. 3, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022671)
HIX0022671
HIT000056769
(
BX648122
)
Representative transcript
(NHL repeat-containing protein 3; Precursor;)
genome : 39,612,496 - 39,624,246 (11,751)
query : 1 - 3,505 (3,505/3,510)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 0.999
InterPro :
IPR001258 : NHL repeat
IPR011042 : Six-bladed beta-propeller, TolB-like
IPR013017 : NHL repeat, subgroup
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 7.5, mito 7.5, extr_plas 7.5, plas 6.5,
cyto_mito 4.5, golg 4, E.R. 3, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022671)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK133986
Gallus
sp. (Chicken) : CR387323
Pongo
sp. (Orangutan) : CR859282
Danio
sp. (Zebrafish) : ENSDART00000055677
Monodelphis
sp. (Opossum) : ENSMODT00000013084
Oryzias
sp. (Medaka) : ENSORLT00000018297
Takifugu
sp. (Fugu) : SINFRUT00000137301
Rattus
sp. (Rat) : XM_001054658
Macaca
sp. (Macaque) : XM_001087923
Equus
sp. (Horse) : XM_001915725
Pan
sp. (Chimpanzee) : XM_509638
Canis
sp. (Dog) : XM_543124
Bos
sp. (Cow) : XM_583100
HIX0022671
HIT000099521
(
BC052492
)
(NHL repeat-containing protein 3; Precursor;)
genome : 39,612,510 - 39,624,241 (11,732)
query : 1 - 3,232 (3,232/3,264)
7 exons
identity = 0.998
5'(0.989;1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR001258 : NHL repeat
IPR011042 : Six-bladed beta-propeller, TolB-like
IPR013017 : NHL repeat, subgroup
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 28, cyto_nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022671)
HIX0022671
HIT000501618
(
BC140877
)
(NHL repeat-containing protein 3; Precursor;)
genome : 39,612,522 - 39,623,521 (11,000)
query : 1 - 2,756 (2,756/2,756)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR001258 : NHL repeat
IPR011042 : Six-bladed beta-propeller, TolB-like
IPR013017 : NHL repeat, subgroup
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 7.5, mito 7.5, extr_plas 7.5, plas 6.5,
cyto_mito 4.5, golg 4, E.R. 3, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022671)
HIX0022671
HIT000501619
(
BC140878
)
(NHL repeat-containing protein 3; Precursor;)
genome : 39,612,522 - 39,623,521 (11,000)
query : 1 - 2,756 (2,756/2,756)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR001258 : NHL repeat
IPR011042 : Six-bladed beta-propeller, TolB-like
IPR013017 : NHL repeat, subgroup
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 7.5, mito 7.5, extr_plas 7.5, plas 6.5,
cyto_mito 4.5, golg 4, E.R. 3, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022671)
HIX0022671
HIT000306357
(
CR749318
)
(NHL repeat-containing protein 3; Precursor;)
genome : 39,612,528 - 39,624,243 (11,716)
query : 2 - 3,274 (3,273/3,290)
6 exons
identity = 0.998
5'(0.997;1.000;1.000;0.978;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR001258 : NHL repeat
IPR011042 : Six-bladed beta-propeller, TolB-like
IPR013017 : NHL repeat, subgroup
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 11.5, extr 6.5, extr_plas 6.5, cyto_mito 6.5,
plas 5.5, lyso 3, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022671)
HIX0022671
HIT000360878 (
ENST00000379599
)
(NHL repeat-containing protein 3; Precursor;)
genome : 39,612,528 - 39,624,246 (11,719)
query : 1 - 3,275 (3,275/3,275)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 9.5, extr 7.5, extr_plas 7, plas 5.5,
cyto_mito 5.5, lyso 4, golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022671)
HIX0022671
HIT000494884
(
AK300260
)
(NHL repeat-containing protein 3; Precursor;)
genome : 39,612,535 - 39,622,530 (9,996)
query : 1 - 1,552 (1,552/1,552)
6 exons
identity = 0.998
5'(0.997;1.000;0.993;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR001258 : NHL repeat
IPR011042 : Six-bladed beta-propeller, TolB-like
IPR013017 : NHL repeat, subgroup
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 9.5, extr 7.5, extr_plas 7, plas 5.5,
cyto_mito 5.5, lyso 4, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022671)
HIX0022671
HIT000493822
(
AK299198
)
(NHL repeat-containing protein 3; Precursor;)
genome : 39,612,536 - 39,622,330 (9,795)
query : 2 - 1,553 (1,552/1,553)
7 exons
identity = 0.999
5'(1.000;1.000;0.993;1.000;1.000;1.000;0.998)3'
coverage = 0.999
InterPro :
IPR001258 : NHL repeat
IPR011042 : Six-bladed beta-propeller, TolB-like
IPR013017 : NHL repeat, subgroup
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 8.5, extr_plas 8, plas 6.5, mito 6.5, golg 4,
cyto_mito 4, E.R. 3, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022671)
HIX0022671
HIT000056519
(
BX647872
)
(NHL repeat-containing protein 3; Precursor;)
genome : 39,612,559 - 39,624,243 (11,685)
query : 2 - 3,245 (3,244/3,274)
6 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR001258 : NHL repeat
IPR011042 : Six-bladed beta-propeller, TolB-like
IPR013017 : NHL repeat, subgroup
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 9.5, extr 7.5, extr_plas 7, plas 5.5,
cyto_mito 5.5, lyso 4, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022671)
HIX0193082
pHIT000023104 ( pHIT000023104 )
Representative transcript
(Hypothetical short protein.)
genome : 40,094,815 - 40,108,367 (13,553)
query : 1 - 225 (225/225)
3 exons
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0193082)
CAGE tag :
H04BA35H0407,H04BA72I2105,H05BA05P1408
H05BA90J0107,H05BB07I1703
AC017111.4
39200001-39345596 F -
NCBI
AL590007.5
39345597-39368193 F +
NCBI
AL354819.15
39368194-39519342 F +
NCBI
AL607149.5
39519343-39523312 F +
NCBI
AL445590.4
39523313-39679271 F +
NCBI
AL157761.8
39679272-39710597 F +
NCBI
AL354809.12
39710598-39846116 F -
NCBI
AL138685.21
39846117-39930702 F +
NCBI
AL158194.16
39930703-40105721 F +
NCBI
AL136358.13
40105722-40226128 F +
NCBI
AL512505.8
40226129-40343550 F +
NCBI
AL596306.4
40343551-40410577 F +
NCBI
AL138702.8
40410578-40600144 F +
NCBI
AL355610.5
40600145-40701622 F +
NCBI
AL356217.30
40701623-40800000 F +
NCBI