bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0037521
HIT000096919
(
BC041877
)
Representative transcript
(Conserved hypothetical protein.)
genome : 54,389,554 - 54,450,253 (60,700)
query : 1 - 3,162 (3,162/3,175)
6 exons
identity = 0.999
5'(1.000;1.000;1.000;0.994;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto_nucl 5.66667, cyto 4.5, cyto_pero 4,
nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037521)
HIX0037521
HIT000726899 (
NR_047488
)
(Conserved hypothetical protein.)
genome : 54,389,554 - 54,450,253 (60,700)
query : 1 - 3,162 (3,162/3,175)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto_nucl 5.66667, cyto 4.5, cyto_pero 4,
nucl 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037521)
HIX0037521
HIT000682365 (
ENST00000569422
)
(Conserved hypothetical protein.)
genome : 54,389,554 - 54,450,254 (60,701)
query : 1 - 3,163 (3,163/3,163)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto_nucl 5.66667, cyto 4.5, cyto_pero 4,
nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037521)
HIX0037329
HIT000091258
(
BC026300
)
Representative transcript
(Conserved hypothetical protein.)
genome : 54,689,924 - 54,707,001 (17,078)
query : 1 - 1,053 (1,053/1,084)
5 exons
identity = 0.996
3'(0.998;0.981;1.000;0.993;1.000)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17, nucl 14.5, cyto 10.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037329)
HIX0037329
HIT000521376 (
ENST00000423442
)
(Conserved hypothetical protein.)
genome : 54,689,924 - 54,707,001 (17,078)
query : 1 - 1,058 (1,058/1,058)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17, nucl 14.5, cyto 10.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037329)
HIX0037329
HIT000090317
(
BC020935
)
(Conserved hypothetical protein.)
genome : 54,698,462 - 54,706,997 (8,536)
query : 1 - 1,027 (1,027/1,070)
4 exons
identity = 0.997
3'(0.995;1.000;0.995;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19, nucl 16, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037329)
HIX0037329
HIT000089527
(
BC018008
)
(Conserved hypothetical protein.)
genome : 54,698,460 - 54,707,001 (8,542)
query : 1 - 1,033 (1,033/1,061)
4 exons
identity = 0.997
3'(0.993;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18.5, nucl 15, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037329)
HIX0037329
HIT000525233 (
ENST00000427299
)
(Conserved hypothetical protein.)
genome : 54,698,459 - 54,706,748 (8,290)
query : 1 - 1,032 (1,032/1,032)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 14, cyto 7, cysk_plas 7, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037329)
HIX0037329
HIT000089479
(
BC017942
)
(Conserved hypothetical protein.)
genome : 54,701,001 - 54,707,001 (6,001)
query : 1 - 1,016 (1,016/1,047)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18.5, nucl 15, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037329)
HIX0037329
HIT000549678 (
ENST00000451744
)
(Conserved hypothetical protein.)
genome : 54,700,997 - 54,707,001 (6,005)
query : 1 - 1,020 (1,020/1,020)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18.5, nucl 15, cyto 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037329)
HIX0026561
HIT000051333
(
BC035117
)
(Conserved hypothetical protein.)
genome : 54,817,928 - 54,819,370 (1,443)
query : 8 - 1,448 (1,441/1,463)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 0.995
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 18, cyto_nucl 5.5, extr 5, nucl 5, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026561)
HIX0026561
HIT000097888
(
BC044614
)
Representative transcript
(Conserved hypothetical protein.)
genome : 54,817,928 - 54,819,370 (1,443)
query : 4 - 1,444 (1,441/1,459)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 18, cyto_nucl 5.5, extr 5, nucl 5, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026561)
HIX0211201
HIT000658544 (
NR_031628
)
(Non-protein coding transcript.)
genome : 54,886,107 - 54,886,183 (77)
query : 1 - 77 (77/77)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211201)
HIX0211178
HIT000587993_01 (
ENST00000484130
)
(Ribosomal protein L13 family protein.)
genome : 55,014,839 - 55,015,450 (612)
query : 1 - 612 (612/612)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 13.5, nucl 12.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211178)
HIX0211178
HIT000564684_04 (
ENST00000459725
)
(Ribosomal protein L13 family protein.)
genome : 55,014,842 - 55,015,450 (609)
query : 1 - 609 (609/609)
1 exon
identity = 0.951
3'(0.951)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 13, nucl 11.5, extr 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211178)
HIX0211178
HIT000598983_04 (
ENST00000495623
)
(Ribosomal protein L13 family protein.)
genome : 55,014,842 - 55,015,448 (607)
query : 1 - 606 (606/606)
1 exon
identity = 0.956
3'(0.956)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, mito 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211178)
HIX0211153
HIT000444657_09
(
DQ578126
)
Representative transcript
(Non-protein coding transcript.)
genome : 55,015,304 - 55,015,333 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211153)
HIX0220839
HIT000506593_03 (
ENST00000408499
)
(Hypothetical short protein.)
genome : 55,509,816 - 55,625,243 (115,428)
query : 5 - 94 (90/95)
2 exons
identity = 0.967
3'(0.939;1.000)5'
coverage = 0.947
SOSUI :
MEMBRANE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220839)
HIX0211139
eHIT000003875 ( ESTsASS_13_236 )
Representative transcript
(Non-protein coding transcript.)
genome : 55,516,030 - 55,560,446 (44,417)
query : 1 - 472 (472/472)
5 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211139)
ESTs used for assembly :
DB464079
HIX0211144
eHIT000004074 ( ESTsASS_13_435 )
Representative transcript
(Non-protein coding transcript.)
genome : 55,628,327 - 55,735,625 (107,299)
query : 1 - 999 (999/999)
4 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211144)
ESTs used for assembly :
BU622700,AA828598
HIX0220812
HIT000694979 (
ENST00000583098
)
(Non-protein coding transcript.)
genome : 55,748,589 - 55,748,683 (95)
query : 1 - 95 (95/95)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220812)
HIX0220812
HIT000727210 (
NR_049804
)
(Non-protein coding transcript.)
genome : 55,748,589 - 55,748,683 (95)
query : 1 - 95 (95/95)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220812)
HIX0211139
eHIT000003875 ( ESTsASS_13_236 )
Representative transcript
(Non-protein coding transcript.)
genome : 55,516,030 - 55,560,446 (44,417)
query : 1 - 472 (472/472)
5 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211139)
ESTs used for assembly :
DB464079
HIX0211144
eHIT000004074 ( ESTsASS_13_435 )
Representative transcript
(Non-protein coding transcript.)
genome : 55,628,327 - 55,735,625 (107,299)
query : 1 - 999 (999/999)
4 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211144)
ESTs used for assembly :
BU622700,AA828598
AL356295.9
54200001-54253785 F +
NCBI
AL445225.9
54253786-54425449 F +
NCBI
AL390722.10
54425450-54543848 F +
NCBI
AL354998.15
54543849-54644327 F +
NCBI
AL356052.14
54644328-54725281 F +
NCBI
AL355485.9
54725282-54874865 F +
NCBI
AL512509.9
54874866-54941189 F +
NCBI
AL356312.12
54941190-55001772 F +
NCBI
AL356120.10
55001773-55085399 F +
NCBI
AL442636.3
55085400-55250917 F +
NCBI
AL512655.17
55250918-55394919 F +
NCBI
AL359961.8
55394920-55411164 F +
NCBI
AL596305.3
55411165-55413158 F +
NCBI
AL390964.9
55413159-55565710 F +
NCBI
AL139038.18
55565711-55706366 F +
NCBI
AL357337.12
55706367-55765320 F +
NCBI
AL592044.4
55765321-55800000 F -
NCBI