bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0011388
HIT000307025
(
CR936752
)
Representative transcript
(RING finger protein 219;)
genome : 79,188,429 - 79,233,290 (44,862)
query : 2 - 3,504 (3,503/3,562)
6 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, nucl 10, extr 5, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011388)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC029231
Bos
sp. (Cow) : BC153258
Gallus
sp. (Chicken) : BX932450
Pongo
sp. (Orangutan) : CR858019
Rattus
sp. (Rat) : ENSRNOT00000012881
Macaca
sp. (Macaque) : XM_001090200
Pan
sp. (Chimpanzee) : XM_001142178
Danio
sp. (Zebrafish) : XM_001343253
Monodelphis
sp. (Opossum) : XM_001362775
Equus
sp. (Horse) : XM_001488679
Canis
sp. (Dog) : XM_534154
HIX0011388
HIT000307027
(
CR936754
)
(RING finger protein 219.)
genome : 79,188,429 - 79,233,301 (44,873)
query : 1 - 3,514 (3,514/3,548)
6 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, nucl 10, extr 5, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011388)
HIX0011388
HIT000307037
(
CR936764
)
(RING finger protein 219.)
genome : 79,188,424 - 79,233,288 (44,865)
query : 1 - 3,435 (3,435/3,461)
7 exons
identity = 0.998
3'(1.000;0.996;1.000;1.000;1.000)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, nucl 10, extr 6, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011388)
HIX0011388
HIT000209259 (
NM_024546
)
(RING finger protein 219;)
genome : 79,188,421 - 79,233,314 (44,894)
query : 1 - 3,534 (3,534/3,552)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, nucl 10, extr 5, cyto 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011388)
HIX0011388
HIT000025247
(
AL136651
)
(RING finger protein 219.)
genome : 79,188,426 - 79,233,282 (44,857)
query : 5 - 3,502 (3,498/3,522)
6 exons
identity = 0.997
3'(1.000;0.992;1.000;1.000;0.990)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10, nucl 9, extr 6, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011388)
HIX0011388
HIT000040577
(
BC028586
)
(RING finger protein 219.)
genome : 79,188,429 - 79,233,314 (44,886)
query : 6 - 3,532 (3,527/3,547)
6 exons
identity = 0.999
3'(1.000;1.000;1.000;0.993;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, nucl 9, extr 6, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011388)
HIX0011388
HIT000112160 (
ENST00000282003
)
(RING finger protein 219;)
genome : 79,188,426 - 79,233,314 (44,889)
query : 1 - 3,529 (3,529/3,529)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, nucl 10, extr 5, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011388)
HIX0011388
HIT000500755
(
BC136764
)
(RING finger protein 219;)
genome : 79,189,443 - 79,233,309 (43,867)
query : 1 - 2,507 (2,507/2,507)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, nucl 10, extr 5, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011388)
HIX0011388
HIT000500756
(
BC136765
)
(RING finger protein 219;)
genome : 79,189,443 - 79,233,309 (43,867)
query : 1 - 2,507 (2,507/2,507)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, nucl 10, extr 5, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011388)
HIX0011388
HIT000023470
(
AK098640
)
(RING finger protein 219.)
genome : 79,189,709 - 79,234,700 (44,992)
query : 2 - 2,334 (2,333/2,334)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, extr 11, cyto_nucl 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011388)
HIX0202019
HIT000092402
(
BC031557
)
Representative transcript
(Conserved hypothetical protein.)
genome : 79,205,518 - 79,207,056 (1,539)
query : 1 - 1,539 (1,539/1,621)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, cyto 7, mito 6, nucl 3, E.R._mito 3,
mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202019)
HIX0171996
HIT000516387 (
ENST00000418453
)
(Conserved hypothetical protein.)
genome : 79,335,310 - 79,335,786 (477)
query : 1 - 477 (477/477)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 9.5, extr 9, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171996)
HIX0172226
HIT000726851 (
NR_046869
)
(Hypothetical short protein.)
genome : 79,361,454 - 79,414,185 (52,732)
query : 1 - 595 (595/595)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_nucl 13.5, extr 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172226)
HIX0172226
HIT000544325 (
ENST00000446391
)
(Non-protein coding transcript.)
genome : 79,361,454 - 79,366,442 (4,989)
query : 1 - 376 (376/376)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172226)
HIX0125334
HIT000483118 (
ENST00000400121
)
(Conserved hypothetical protein.)
genome : 79,423,366 - 79,425,343 (1,978)
query : 1 - 1,658 (1,658/1,658)
2 exons
identity = 0.997
3'(1.000;0.995)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr_plas 13.5, plas 13, extr 12, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0125334)
HIX0172122
HIT000530908 (
ENST00000432974
)
(Chaperonin Cpn60/TCP-1 family protein.)
genome : 79,483,054 - 79,484,677 (1,624)
query : 1 - 1,624 (1,624/1,624)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25.5, cyto_nucl 16.5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172122)
HIX0172270
HIT000550216 (
ENST00000452282
)
(Magnesium transporter NIPA family protein.)
genome : 79,664,918 - 79,668,254 (3,337)
query : 1 - 464 (464/464)
2 exons
identity = 0.998
5'(1.000;0.989)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172270)
HIX0171981
HIT000514308 (
ENST00000416374
)
(Pre-mRNA-splicing factor SPF27 family protein.)
genome : 79,740,254 - 79,741,020 (767)
query : 1 - 767 (767/767)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 7, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171981)
HIX0011390
HIT000547921 (
ENST00000449987
)
(RNA recognition motif domain containing protein.)
genome : 79,885,962 - 79,915,347 (29,386)
query : 1 - 3,659 (3,659/3,659)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, nucl 10, extr 7, cyto_mito 7, cyto_plas 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011390)
HIX0011390
HIT000097561
(
BC043240
)
(Hypothetical protein.)
genome : 79,886,137 - 79,888,263 (2,127)
query : 1 - 2,116 (2,116/2,131)
1 exon
identity = 0.991
3'(0.991)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 8, cyto 8, plas 6, E.R._mito 3.5, nucl 3, E.R. 3,
cysk_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011390)
HIX0011390
HIT000011044
(
AK027772
)
(Conserved hypothetical protein.)
genome : 79,888,706 - 79,891,225 (2,520)
query : 1 - 2,533 (2,533/2,533)
1 exon
identity = 0.992
3'(0.992)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011390)
HIX0011390
HIT000003428
(
AK000954
)
(Hypothetical short protein.)
genome : 79,888,713 - 79,890,296 (1,584)
query : 1 - 1,584 (1,584/1,584)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011390)
HIX0011390
HIT000588416 (
ENST00000484573
)
(Nucleotide-binding alpha-beta plait domain containing protein.)
genome : 79,893,387 - 79,943,126 (49,740)
query : 1 - 3,531 (3,531/3,531)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 12.5, mito 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011390)
HIX0011390
HIT000007884
(
AK024610
)
(Conserved hypothetical protein.)
genome : 79,894,061 - 79,916,948 (22,888)
query : 3 - 1,450 (1,448/1,484)
6 exons
identity = 0.994
3'(0.991;0.991;1.000;1.000;1.000;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 9.5, extr 8, nucl 5.5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011390)
HIX0011390
HIT000010611
(
AK027339
)
(RNA-binding protein 26.)
genome : 79,894,062 - 79,943,126 (49,065)
query : 12 - 2,869 (2,858/2,869)
16 exons
identity = 0.999
3'(0.997;1.000;1.000;0.995;1.000;1.000;1.000;
0.992;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.996
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 12.5, mito 8, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011390)
HIX0011390
HIT000075864
(
AF273052
)
(Conserved hypothetical protein.)
genome : 79,894,105 - 79,918,883 (24,779)
query : 1 - 1,571 (1,571/1,592)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 9.5, extr 8, nucl 5.5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011390)
HIX0011390
HIT000029922
(
BC000791
)
(Conserved hypothetical protein.)
genome : 79,894,105 - 79,916,968 (22,864)
query : 9 - 1,426 (1,418/1,445)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.994
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 9.5, extr 8, nucl 5.5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011390)
HIX0011390
HIT000029073
(
AL834343
)
Representative transcript
(RNA-binding protein 26; CTCL tumor antigen se70-2; RNA-binding motif protein 26;)
genome : 79,894,106 - 79,943,119 (49,014)
query : 1 - 3,034 (3,034/3,053)
17 exons
identity = 0.999
3'(0.999;1.000;1.000;0.995;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.996;1.000)5'
coverage = 0.999
InterPro :
IPR000504 : RNA recognition motif domain
IPR000571 : Zinc finger, CCCH-type
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0046872 : Molecular Function : metal ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto_nucl 17, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011390)
HIX0011390
HIT000261727
(
BC065024
)
(Zinc finger, CCCH-type domain containing protein.)
genome : 79,894,105 - 79,941,007 (46,903)
query : 1 - 2,708 (2,708/2,725)
15 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.996)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR000571 : Zinc finger, CCCH-type
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0046872 : Molecular Function : metal ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, cyto 15, nucl 14
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011390)
HIX0011390
HIT000010728
(
AK027456
)
(Zinc finger, CCCH-type domain containing protein.)
genome : 79,894,143 - 79,940,998 (46,856)
query : 1 - 2,661 (2,661/2,661)
15 exons
identity = 0.999
3'(0.999;0.991;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR000571 : Zinc finger, CCCH-type
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0046872 : Molecular Function : metal ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17.5, cyto 15.5, nucl 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011390)
HIX0011390
HIT000497551
(
AK302927
)
(Conserved hypothetical protein.)
genome : 79,896,066 - 79,928,894 (32,829)
query : 1 - 1,615 (1,615/1,615)
8 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 9.5, extr 8, nucl 5.5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011390)
HIX0011390
HIT000565915 (
ENST00000461008
)
(Conserved hypothetical protein.)
genome : 79,939,895 - 79,940,845 (951)
query : 1 - 514 (514/514)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 7, mito 7, cyto 6, mito_nucl 6, extr_plas 5.5,
nucl 5, mito_pero 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011390)
HIX0220770
HIT000576533 (
ENST00000472143
)
(PWI domain containing protein.)
genome : 79,950,352 - 79,980,612 (30,261)
query : 1 - 2,195 (2,195/2,195)
3 exons
identity = 1.000
3'(1.000;1.000;0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 12, cyto_nucl 11.8333,
cyto_plas 8.16667, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220770)
HIX0220770
HIT000070003
(
AF116667
)
Representative transcript
(PWI domain containing protein.)
genome : 79,950,541 - 79,979,955 (29,415)
query : 1 - 1,346 (1,346/1,346)
3 exons
identity = 0.996
3'(0.995;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002483 : PWI domain
GO :
0006397 : Biological Process : mRNA processing
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14, cyto_plas 11.5, extr 7,
nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220770)
HIX0220770
HIT000092237
(
BC030806
)
(Hypothetical short protein.)
genome : 79,976,586 - 79,980,380 (3,795)
query : 1 - 3,804 (3,804/3,833)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, nucl 6, cyto_nucl 5.5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220770)
HIX0022303
HIT000725655 (
NR_038991
)
(Conserved hypothetical protein.)
genome : 79,980,444 - 79,998,467 (18,024)
query : 1 - 2,470 (2,470/2,484)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 17, cyto 5.5, mito 5.5, cyto_nucl 4.5,
mito_pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022303)
HIX0022303
HIT000554536 (
ENST00000456602
)
(Conserved hypothetical protein.)
genome : 79,980,444 - 79,997,090 (16,647)
query : 1 - 1,756 (1,756/1,756)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22, cyto_nucl 6, nucl 5, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022303)
HIX0022303
HIT000004670
(
AK002196
)
(Conserved hypothetical protein.)
genome : 79,980,444 - 79,997,087 (16,644)
query : 1 - 1,753 (1,753/1,753)
6 exons
identity = 0.998
5'(0.988;0.996;1.000;1.000;0.982;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022303)
HIX0022303
HIT000093577
(
BC034812
)
Representative transcript
(Conserved hypothetical protein.)
genome : 79,980,483 - 79,998,467 (17,985)
query : 1 - 2,431 (2,431/2,445)
7 exons
identity = 0.994
5'(0.992;0.982;1.000;1.000;1.000;0.996;0.995)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25, nucl 2, cyto 2, mito 2, cyto_nucl 2,
cyto_mito 2, mito_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022303)
HIX0172307
HIT000555105 (
ENST00000457171
)
(Hypothetical short protein.)
genome : 80,051,499 - 80,055,366 (3,868)
query : 1 - 431 (431/431)
3 exons
identity = 0.993
3'(1.000;1.000;0.965)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172307)
HIX0172307
HIT000726820 (
NR_046685
)
(Hypothetical short protein.)
genome : 80,051,499 - 80,055,366 (3,868)
query : 1 - 431 (431/431)
3 exons
identity = 0.993
3'(1.000;1.000;0.965)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172307)
HIX0011391
HIT000317381 (
NM_019080
)
(NEDD4 family-interacting protein 2; NEDD4 WW domain-binding protein 5A; Putative MAPK-activating protein PM04/PM05/PM06/PM07; Putative NF-kappa-B-activating protein 413;)
genome : 80,055,259 - 80,130,211 (74,953)
query : 1 - 4,654 (4,654/4,666)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 22, mito 6, pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011391)
HIX0011391
HIT000561950 (
NM_001161407
)
(NEDD4 family-interacting protein 2 isoform 2.)
genome : 80,055,259 - 80,130,211 (74,953)
query : 1 - 4,594 (4,594/4,606)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 16, mito 9, pero 3, extr 1, E.R. 1, lyso 1,
golg 1, E.R._golg 1
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011391)
HIX0011391
HIT000103338 (
ENST00000218652
)
(NEDD4 family-interacting protein 2; NEDD4 WW domain-binding protein 5A; Putative MAPK-activating protein PM04/PM05/PM06/PM07; Putative NF-kappa-B-activating protein 413;)
genome : 80,055,287 - 80,130,210 (74,924)
query : 1 - 4,625 (4,625/4,625)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 22, mito 6, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011391)
HIX0011391
HIT000242156
(
AB097019
)
(NEDD4 family-interacting protein 2; NEDD4 WW domain-binding protein 5A; Putative MAPK-activating protein PM04/PM05/PM06/PM07; Putative NF-kappa-B-activating protein 413;)
genome : 80,055,287 - 80,128,221 (72,935)
query : 1 - 2,636 (2,636/2,636)
8 exons
identity = 0.999
5'(1.000;0.994;1.000;1.000;1.000;1.000;1.000;
0.999)3'
coverage = 1.000
InterPro :
IPR019325 : NEDD4/BSD2
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 22, mito 6, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011391)
HIX0011391
HIT000242165
(
AB097028
)
(NEDD4 family-interacting protein 2; NEDD4 WW domain-binding protein 5A; Putative MAPK-activating protein PM04/PM05/PM06/PM07; Putative NF-kappa-B-activating protein 413;)
genome : 80,055,287 - 80,128,221 (72,935)
query : 1 - 2,636 (2,636/2,636)
8 exons
identity = 0.999
5'(1.000;0.994;1.000;1.000;1.000;1.000;1.000;
0.999)3'
coverage = 1.000
InterPro :
IPR019325 : NEDD4/BSD2
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 22, mito 6, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011391)
HIX0011391
HIT000242166
(
AB097029
)
(NEDD4 family-interacting protein 2; NEDD4 WW domain-binding protein 5A; Putative MAPK-activating protein PM04/PM05/PM06/PM07; Putative NF-kappa-B-activating protein 413;)
genome : 80,055,287 - 80,128,221 (72,935)
query : 1 - 2,636 (2,636/2,636)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.999)3'
coverage = 1.000
InterPro :
IPR019325 : NEDD4/BSD2
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 22, mito 6, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011391)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ851545
Mus
sp. (Mouse) : AK132235
Danio
sp. (Zebrafish) : BC059183
Bos
sp. (Cow) : BC105183
Pongo
sp. (Orangutan) : CR859984
Oryzias
sp. (Medaka) : ENSORLT00000005773
Rattus
sp. (Rat) : ENSRNOT00000039423
Tetraodon
sp. (Tetraodon) : GSTENT00026913001
Macaca
sp. (Macaque) : XM_001092556
Monodelphis
sp. (Opossum) : XM_001367960
Equus
sp. (Horse) : XM_001916222
Pan
sp. (Chimpanzee) : XM_522688
Canis
sp. (Dog) : XM_534156
HIX0011391
HIT000491821
(
AK297197
)
(NEDD4 family-interacting protein 2 isoform 1.)
genome : 80,055,412 - 80,126,884 (71,473)
query : 2 - 1,034 (1,033/1,034)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 0.999
InterPro :
IPR019325 : NEDD4/BSD2
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011391)
HIX0011391
HIT000004197
(
AK001723
)
(NEDD4 family-interacting protein 2 isoform 1.)
genome : 80,055,468 - 80,128,221 (72,754)
query : 1 - 2,457 (2,457/2,457)
8 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.997)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011391)
HIX0011391
HIT000000881
(
AB032991
)
Representative transcript
(NEDD4 family-interacting protein 2 isoform 1.)
genome : 80,055,495 - 80,130,210 (74,716)
query : 1 - 4,415 (4,415/4,415)
8 exons
identity = 0.998
5'(1.000;0.994;1.000;1.000;1.000;1.000;1.000;
0.998)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011391)
HIX0011391
HIT000040116
(
BC026126
)
(NEDD4 family-interacting protein 2 isoform 1.)
genome : 80,055,498 - 80,127,060 (71,563)
query : 1 - 1,264 (1,264/1,299)
8 exons
identity = 0.999
5'(1.000;0.994;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR019325 : NEDD4/BSD2
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011391)
HIX0011391
HIT000039332
(
BC021988
)
(NEDD4 family-interacting protein 2 isoform 1.)
genome : 80,055,531 - 80,127,051 (71,521)
query : 5 - 1,226 (1,222/1,255)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 0.995
InterPro :
IPR019325 : NEDD4/BSD2
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28.5, extr_plas 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011391)
HIX0011391
HIT000489463
(
AK294839
)
(NEDD4 family-interacting protein 2 isoform 2.)
genome : 80,055,588 - 80,127,330 (71,743)
query : 1 - 1,384 (1,384/1,384)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR019325 : NEDD4/BSD2
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011391)
HIX0011391
HIT000591550 (
ENST00000487865
)
(NEDD4 family-interacting protein 2 isoform 2.)
genome : 80,055,588 - 80,127,330 (71,743)
query : 1 - 1,384 (1,384/1,384)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011391)
HIX0011391
HIT000570448 (
ENST00000465762
)
(NEDD4 family-interacting protein 2 isoform 1.)
genome : 80,055,592 - 80,126,713 (71,122)
query : 1 - 698 (698/698)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 14, cyto 9, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011391)
HIX0011391
HIT000242167
(
AB097030
)
(NEDD4 family-interacting protein 2 isoform 1.)
genome : 80,055,609 - 80,128,231 (72,623)
query : 1 - 2,324 (2,324/2,324)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.999)3'
coverage = 1.000
InterPro :
IPR019325 : NEDD4/BSD2
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011391)
HIX0011391
HIT000242168
(
AB097031
)
(NEDD4 family-interacting protein 2 isoform 1.)
genome : 80,055,609 - 80,128,231 (72,623)
query : 1 - 2,324 (2,324/2,324)
8 exons
identity = 0.999
5'(1.000;0.994;1.000;1.000;1.000;1.000;1.000;
0.999)3'
coverage = 1.000
InterPro :
IPR019325 : NEDD4/BSD2
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011391)
HIX0011391
HIT000023538
(
AK098708
)
(NEDD4 family-interacting protein 2 isoform 1.)
genome : 80,079,509 - 80,127,059 (47,551)
query : 1 - 1,063 (1,063/1,063)
7 exons
identity = 0.999
5'(1.000;1.000;0.994;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR019325 : NEDD4/BSD2
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 6, plas 5.5, cyto_nucl 5.5, cyto_pero 5.5,
nucl 5, pero 5, cyto_mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011391)
HIX0011391
HIT000598040 (
ENST00000494647
)
(NEDD4 family-interacting protein 2 isoform 2.)
genome : 80,093,127 - 80,095,113 (1,987)
query : 1 - 347 (347/347)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 9, cyto_nucl 9, extr_plas 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011391)
HIX0172255
HIT000548121 (
ENST00000450187
)
(Hypothetical short protein.)
genome : 80,140,881 - 80,144,983 (4,103)
query : 1 - 348 (348/348)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172255)
HIX0172315
HIT000555792 (
ENST00000457858
)
(Hypothetical short protein.)
genome : 80,378,553 - 80,379,820 (1,268)
query : 1 - 428 (428/428)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172315)
HIX0037496
HIT000094344
(
BC036310
)
Representative transcript
(Hypothetical protein.)
genome : 80,446,721 - 80,492,171 (45,451)
query : 3 - 984 (982/1,015)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto 11, extr 6, cyto_golg 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037496)
Ortholog candidate ( ->
Evola
)
Pan
sp. (Chimpanzee) : XM_001142802
HIX0037496
HIT000525852 (
ENST00000427918
)
(Hypothetical protein.)
genome : 80,446,721 - 80,492,079 (45,359)
query : 1 - 890 (890/890)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto 11, extr 6, cyto_golg 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037496)
HIX0026623
HIT000057741
(
BX649094
)
Representative transcript
(Conserved hypothetical protein.)
genome : 80,621,069 - 80,627,769 (6,701)
query : 1 - 6,701 (6,701/6,725)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, mito 10, cyto_nucl 2, nucl 1.5, cyto 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026623)
HIX0220900
HIT000057319
(
BX648672
)
(RNA-binding protein 26; CTCL tumor antigen se70-2; RNA-binding motif protein 26;)
genome : 79,894,102 - 79,979,914 (85,813)
query : 1 - 7,925 (7,925/7,943)
19 exons
identity = 0.998
3'(0.997;0.998;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.993;1.000;1.000;1.000;
1.000;1.000;0.993;1.000;0.987)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR000571 : Zinc finger, CCCH-type
IPR002483 : PWI domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0006397 : Biological Process : mRNA processing
0046872 : Molecular Function : metal ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 10, cyto_golg 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220900)
HIX0220900
HIT000536671 (
ENST00000438737
)
(RNA-binding protein 26; CTCL tumor antigen se70-2; RNA-binding motif protein 26;)
genome : 79,894,105 - 79,980,350 (86,246)
query : 1 - 4,119 (4,119/4,135)
22 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 15.8333, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220900)
HIX0220900
HIT000096826
(
BC041655
)
(RNA-binding protein 26.)
genome : 79,894,105 - 79,979,923 (85,819)
query : 1 - 3,608 (3,608/3,624)
21 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR000571 : Zinc finger, CCCH-type
IPR002483 : PWI domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0006397 : Biological Process : mRNA processing
0046872 : Molecular Function : metal ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.3333, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220900)
HIX0220900
HIT000110134 (
ENST00000267229
)
(RNA-binding protein 26.)
genome : 79,894,105 - 79,979,923 (85,819)
query : 1 - 3,608 (3,608/3,624)
21 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.3333, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220900)
HIX0220900
HIT000208615 (
NM_022118
)
(RNA-binding protein 26.)
genome : 79,894,105 - 79,979,923 (85,819)
query : 1 - 3,608 (3,608/3,624)
21 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.3333, cyto 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220900)
HIX0220900
HIT000497495
(
AK302871
)
(RNA-binding protein 26.)
genome : 79,894,136 - 79,979,965 (85,830)
query : 1 - 3,628 (3,628/3,630)
21 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR000504 : RNA recognition motif domain
IPR000571 : Zinc finger, CCCH-type
IPR002483 : PWI domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0006397 : Biological Process : mRNA processing
0046872 : Molecular Function : metal ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.3333, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220900)
HIX0220900
HIT000124920 (
ENST00000327303
)
(RNA-binding protein 26; CTCL tumor antigen se70-2; RNA-binding motif protein 26;)
genome : 79,894,143 - 79,979,965 (85,823)
query : 1 - 3,693 (3,693/3,693)
22 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 15.8333, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220900)
HIX0220900
HIT000536658 (
ENST00000438724
)
(RNA-binding protein 26.)
genome : 79,894,143 - 79,979,965 (85,823)
query : 1 - 3,621 (3,621/3,621)
21 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.3333, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220900)
HIX0220900
HIT000339977
(
BC111697
)
(RNA-binding protein 26.)
genome : 79,894,520 - 79,979,917 (85,398)
query : 1 - 3,196 (3,196/3,196)
21 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR000571 : Zinc finger, CCCH-type
IPR002483 : PWI domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0006397 : Biological Process : mRNA processing
0046872 : Molecular Function : metal ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.3333, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220900)
HIX0220900
HIT000340010
(
BC111739
)
Representative transcript
(RNA-binding protein 26; CTCL tumor antigen se70-2; RNA-binding motif protein 26;)
genome : 79,894,520 - 79,979,917 (85,398)
query : 1 - 3,275 (3,275/3,275)
22 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.993;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, E.R. 13, plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220900)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB172150
Mus
sp. (Mouse) : BC049360
Rattus
sp. (Rat) : BC082039
Gallus
sp. (Chicken) : BX933411
Pongo
sp. (Orangutan) : CR858794
Oryzias
sp. (Medaka) : ENSORLT00000005566
Tetraodon
sp. (Tetraodon) : GSTENT00017987001
Takifugu
sp. (Fugu) : SINFRUT00000133187
Monodelphis
sp. (Opossum) : XM_001362858
Equus
sp. (Horse) : XM_001488754
Danio
sp. (Zebrafish) : XM_001920467
Bos
sp. (Cow) : XM_580523
Canis
sp. (Dog) : XM_844200
Pan
sp. (Chimpanzee) : XR_023404
AL445209.4
79200001-79214215 F +
NCBI
AL139319.16
79214216-79273052 F +
NCBI
AL354869.11
79273053-79470686 F -
NCBI
AL359647.9
79470687-79556636 F +
NCBI
AL353592.9
79556637-79619861 F +
NCBI
AL162374.8
79619862-79652685 F +
NCBI
AL161892.9
79652686-79798801 F +
NCBI
AL159974.21
79798802-79964027 F +
NCBI
AL139006.13
79964028-79999268 F +
NCBI
AL355603.17
79999269-80099040 F +
NCBI
AL136442.12
80099041-80254735 F -
NCBI
AL391804.8
80254736-80324601 F +
NCBI
AL355595.10
80324602-80443844 F +
NCBI
AL512623.5
80443845-80527759 F +
NCBI
AL158064.16
80527760-80688246 F +
NCBI
AL137781.18
80688247-80800000 F +
NCBI