bases per tick :
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kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0037533
HIT000097596
(
BC043278
)
Representative transcript
(Conserved hypothetical protein.)
genome : 89,279,107 - 89,282,654 (3,548)
query : 2 - 1,602 (1,601/1,616)
2 exons
identity = 0.991
5'(0.989;0.997)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, nucl 11, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037533)
HIX0037533
HIT000677708 (
ENST00000564593
)
(Hypothetical short protein.)
genome : 89,279,107 - 89,282,651 (3,545)
query : 1 - 1,599 (1,599/1,599)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, nucl 11, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037533)
HIX0171867
HIT000551079 (
ENST00000453145
)
(GrpE nucleotide exchange factor family protein.)
genome : 89,630,701 - 89,631,039 (339)
query : 1 - 339 (339/339)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 6.5, cyto_nucl 5, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171867)
HIX0037529
HIT000097442
(
BC042969
)
Representative transcript
(Conserved hypothetical protein.)
genome : 89,746,230 - 89,747,734 (1,505)
query : 1 - 1,504 (1,504/1,519)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 8, cyto 2, mito 2, cyto_mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037529)
HIX0171831
HIT000513127 (
ENST00000415193
)
(Conserved hypothetical protein.)
genome : 89,867,101 - 89,889,144 (22,044)
query : 1 - 778 (778/778)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171831)
HIX0171831
HIT000542961 (
ENST00000445027
)
(Conserved hypothetical protein.)
genome : 89,867,150 - 89,872,813 (5,664)
query : 1 - 687 (687/687)
4 exons
identity = 0.999
3'(1.000;1.000;1.000;0.963)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 10, cyto_nucl 8.5, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171831)
HIX0172115
HIT000530284 (
ENST00000432350
)
(Conserved hypothetical protein.)
genome : 89,901,072 - 89,902,354 (1,283)
query : 1 - 1,283 (1,283/1,283)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, cyto 9, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172115)
HIX0172228
HIT000544513 (
ENST00000446579
)
(Conserved hypothetical protein.)
genome : 89,925,457 - 89,932,494 (7,038)
query : 1 - 734 (734/734)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 3, mito 3, mito_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172228)
HIX0037342
HIT000094571
(
BC036697
)
Representative transcript
(Transcription factor Sp3; SPR-2;)
genome : 90,011,999 - 90,015,611 (3,613)
query : 6 - 3,617 (3,612/3,682)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 13, cyto 10.5, cyto_nucl 8, nucl 4.5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037342)
Ortholog candidate ( ->
Evola
)
Oryzias
sp. (Medaka) : ENSORLT00000009434
Tetraodon
sp. (Tetraodon) : GSTENT00031442001
Takifugu
sp. (Fugu) : SINFRUT00000149501
Danio
sp. (Zebrafish) : XM_686004
Macaca
sp. (Macaque) : XR_011404
Pan
sp. (Chimpanzee) : XR_022815
HIX0037342
HIT000511983 (
ENST00000414049
)
(Transcription factor Sp3; SPR-2;)
genome : 90,013,414 - 90,015,478 (2,065)
query : 1 - 2,065 (2,065/2,065)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 13, cyto 10.5, cyto_nucl 8, nucl 4.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037342)
HIX0172051
HIT000522982 (
ENST00000425048
)
(Hypothetical short protein.)
genome : 90,129,862 - 90,152,763 (22,902)
query : 1 - 666 (666/666)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto 8.5, extr 6, cyto_nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172051)
HIX0171856
HIT000533335 (
ENST00000435401
)
(Hypothetical short protein.)
genome : 90,200,945 - 90,206,058 (5,114)
query : 1 - 685 (685/685)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 6, cyto 6, cyto_nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171856)
HIX0171856
HIT000726879 (
NR_046991
)
(Hypothetical short protein.)
genome : 90,201,048 - 90,216,667 (15,620)
query : 1 - 655 (655/655)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 6, cyto 6, cyto_nucl 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171856)
HIX0211165
HIT000532051 (
ENST00000434117
)
(Hypothetical short protein.)
genome : 90,203,487 - 90,204,643 (1,157)
query : 1 - 330 (330/330)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 7, nucl 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211165)
HIX0172241
HIT000546193 (
ENST00000448259
)
(Ribosomal protein L30, ferredoxin-like fold domain containing protein.)
genome : 90,485,411 - 90,486,195 (785)
query : 1 - 785 (785/785)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, mito 11, cyto_nucl 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172241)
HIX0130599
HIT000345474 (
ENST00000363863
)
(Non-protein coding transcript.)
genome : 90,489,424 - 90,489,491 (68)
query : 1 - 68 (68/68)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0130599)
HIX0131022
HIT000483269 (
ENST00000400284
)
(Pex, N-terminal domain containing protein.)
genome : 90,644,085 - 90,645,132 (1,048)
query : 1 - 1,048 (1,048/1,048)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, cyto 5, cyto_nucl 5, extr 4, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0131022)
HIX0037535
HIT000097691
(
BC043442
)
Representative transcript
(Conserved hypothetical protein.)
genome : 90,712,505 - 90,771,971 (59,467)
query : 6 - 3,863 (3,858/3,916)
6 exons
identity = 0.997
3'(0.994;1.000;1.000;1.000;0.998;0.997)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 11, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037535)
HIX0037535
HIT000726900 (
NR_047489
)
(Conserved hypothetical protein.)
genome : 90,712,505 - 90,771,971 (59,467)
query : 1 - 3,861 (3,861/3,875)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 11, cyto 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037535)
HIX0037535
HIT000682418 (
ENST00000569476
)
(Conserved hypothetical protein.)
genome : 90,712,506 - 90,771,973 (59,468)
query : 1 - 3,862 (3,862/3,862)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 11, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037535)
HIX0211194
HIT000616290 (
ENST00000516887
)
(Non-protein coding transcript.)
genome : 90,787,966 - 90,788,095 (130)
query : 1 - 130 (130/130)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211194)
AL445984.6
89200001-89368403 F +
NCBI
AL157763.6
89368404-89420003 F +
NCBI
AL603763.3
89420004-89425619 F +
NCBI
AL445242.3
89425620-89583796 F -
NCBI
AL356297.8
89583797-89604523 F +
NCBI
AL603716.2
89604524-89680231 F +
NCBI
AL162573.15
89680232-89844740 F +
NCBI
AL353635.17
89844741-89875974 F +
NCBI
AL354997.17
89875975-90012219 F +
NCBI
AL163533.14
90012220-90165711 F +
NCBI
AL583783.6
90165712-90251217 F +
NCBI
AL158067.18
90251218-90416347 F +
NCBI
AL355821.9
90416348-90512356 F +
NCBI
AL591764.5
90512357-90518342 F +
NCBI
AL359842.14
90518343-90653285 F +
NCBI
AL442126.6
90653286-90785074 F +
NCBI
AL354915.5
90785075-90800000 F +
NCBI