bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0162542
HIT000525076 (
ENST00000427142
)
(Conserved hypothetical protein.)
genome : 124,519,747 - 124,520,647 (901)
query : 1 - 901 (901/901)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 12.5, nucl 8, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162542)
HIX0030653
HIT000192339
(
L19367
)
Representative transcript
(Hypothetical short protein.)
genome : 124,608,099 - 124,608,272 (174)
query : 6 - 178 (173/178)
1 exon
identity = 0.994
3'(0.994)5'
coverage = 0.972
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030653)
HIX0162168
HIT000509132 (
ENST00000411186
)
(Hypothetical protein.)
genome : 124,626,833 - 124,627,147 (315)
query : 1 - 315 (315/315)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162168)
HIX0002426
HIT000017060
(
AK092193
)
Representative transcript
(Conserved hypothetical protein.)
genome : 124,769,622 - 124,771,990 (2,369)
query : 1 - 2,369 (2,369/2,369)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, cyto 12, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002426)
HIX0162837
HIT000536750 (
ENST00000438816
)
(Non-protein coding transcript.)
genome : 124,774,435 - 124,782,750 (8,316)
query : 1 - 542 (542/542)
2 exons
identity = 0.993
3'(1.000;0.992)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162837)
HIX0002427
HIT000013142
(
AK056528
)
(Contactin-associated protein-like 5 precursor.)
genome : 124,782,864 - 125,672,912 (890,049)
query : 1 - 3,313 (3,313/3,313)
19 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.995;1.000;1.000;
1.000;0.993;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000421 : Coagulation factor 5/8 C-terminal type domain
IPR000742 : Epidermal growth factor-like domain
IPR001791 : Laminin G domain
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
IPR008979 : Galactose-binding domain-like
IPR013320 : Concanavalin A-like lectin/glucanase domain
IPR028874 : Contactin-associated protein-like 5
GO :
0005515 : Molecular Function : protein binding
0007155 : Biological Process : cell adhesion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, E.R. 3, nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002427)
HIX0002427
HIT000212063 (
NM_130773
)
(Contactin-associated protein-like 5 precursor.)
genome : 124,782,864 - 125,672,864 (890,001)
query : 1 - 5,284 (5,284/5,284)
24 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 16, plas 8.5, extr_plas 8, mito_pero 8,
cyto_pero 8
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002427)
HIX0002427
HIT000529012 (
ENST00000431078
)
(Contactin-associated protein-like 5 precursor.)
genome : 124,782,864 - 125,672,864 (890,001)
query : 1 - 5,284 (5,284/5,284)
24 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 16, plas 8.5, extr_plas 8, mito_pero 8,
cyto_pero 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002427)
HIX0002427
HIT000521873 (
ENST00000423939
)
(Contactin-associated protein-like 5 precursor.)
genome : 124,782,864 - 124,892,758 (109,895)
query : 1 - 560 (560/560)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, mito 5, cyto 2.5, E.R._mito 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002427)
HIX0002427
HIT000061322
(
AB077881
)
Representative transcript
(Contactin-associated protein-like 5 precursor.)
genome : 124,783,228 - 125,672,864 (889,637)
query : 1 - 4,920 (4,920/4,920)
24 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000421 : Coagulation factor 5/8 C-terminal type domain
IPR000742 : Epidermal growth factor-like domain
IPR001791 : Laminin G domain
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
IPR008979 : Galactose-binding domain-like
IPR013320 : Concanavalin A-like lectin/glucanase domain
IPR028874 : Contactin-associated protein-like 5
GO :
0005515 : Molecular Function : protein binding
0007155 : Biological Process : cell adhesion
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 16, plas 8.5, extr_plas 8, mito_pero 8,
cyto_pero 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002427)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK082656
Oryzias
sp. (Medaka) : ENSORLT00000002351
Oryzias
sp. (Medaka) : ENSORLT00000022774
Pongo
sp. (Orangutan) : ENSPPYT00000014833
Tetraodon
sp. (Tetraodon) : GSTENT00029126001
Rattus
sp. (Rat) : NM_001047865
Rattus
sp. (Rat) : NM_001047866
Rattus
sp. (Rat) : NM_001047873
Canis
sp. (Dog) : NM_001048108
Takifugu
sp. (Fugu) : SINFRUT00000156438
Takifugu
sp. (Fugu) : SINFRUT00000173547
Takifugu
sp. (Fugu) : SINFRUT00000182790
Macaca
sp. (Macaque) : XM_001086018
Danio
sp. (Zebrafish) : XM_001338437
Monodelphis
sp. (Opossum) : XM_001362165
Equus
sp. (Horse) : XM_001489205
Pan
sp. (Chimpanzee) : XM_515771
Danio
sp. (Zebrafish) : XM_692552
Danio
sp. (Zebrafish) : XM_695530
Rattus
sp. (Rat) : XR_007922
HIX0002427
HIT000575373 (
ENST00000470921
)
(Contactin-associated protein-like 5 precursor.)
genome : 124,979,282 - 125,000,018 (20,737)
query : 1 - 347 (347/347)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto 9, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002427)
HIX0163324
HIT000556314 (
ENST00000458380
)
(Hypothetical protein.)
genome : 125,438,299 - 125,438,493 (195)
query : 1 - 195 (195/195)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, extr 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0163324)
HIX0117723
HIT000346578 (
ENST00000364983
)
(Hypothetical short protein.)
genome : 125,886,409 - 125,886,490 (82)
query : 1 - 82 (82/82)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0117723)
AC092646.2
124500001-124548793 F +
NCBI
AC064859.6
124548794-124658898 F +
NCBI
AC079154.5
124658899-124832285 F +
NCBI
AC105762.4
124832286-124906611 F +
NCBI
AC074362.5
124906612-125054322 F +
NCBI
AC010901.8
125054323-125130507 F +
NCBI
AC104648.2
125130508-125240591 F +
NCBI
AC097715.3
125240592-125382233 F +
NCBI
AC019159.8
125382234-125543318 F +
NCBI
AC092158.4
125543319-125547324 F +
NCBI
AC019105.7
125547325-125717815 F +
NCBI
AC098853.2
125717816-125808995 F +
NCBI
AC104842.4
125808996-125959617 F +
NCBI
AC012001.6
125959618-126100000 F +
NCBI