bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0162417
HIT000519294 (
ENST00000421360
)
(Conserved hypothetical protein.)
genome : 154,617,963 - 154,619,159 (1,197)
query : 1 - 1,197 (1,197/1,197)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 12.8333, cyto_plas 11.3333, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162417)
HIX0002516
HIT000317726 (
NM_052917
)
(Polypeptide N-acetylgalactosaminyltransferase 13; EC=2.4.1.41; Polypeptide GalNAc transferase 13; GalNAc-T13; pp-GaNTase 13; Protein-UDP acetylgalactosaminyltransferase 13; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 13;)
genome : 154,728,426 - 155,310,489 (582,064)
query : 1 - 5,664 (5,664/5,674)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.4.1.41
KEGG pathway :
00512 : Mucin type O-Glycan biosynthesis (7)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
golg 15, extr 6, pero 4, E.R. 3, lyso 3, extr_plas 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
HIX0002516
HIT000476298 (
ENST00000392825
)
(Polypeptide N-acetylgalactosaminyltransferase 13; EC=2.4.1.41; Polypeptide GalNAc transferase 13; GalNAc-T13; pp-GaNTase 13; Protein-UDP acetylgalactosaminyltransferase 13; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 13;)
genome : 154,728,426 - 155,310,361 (581,936)
query : 1 - 5,536 (5,536/5,536)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.4.1.41
KEGG pathway :
00512 : Mucin type O-Glycan biosynthesis (7)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
golg 15, extr 6, pero 4, E.R. 3, lyso 3, extr_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
HIX0002516
HIT000249483
(
AK131195
)
(Polypeptide N-acetylgalactosaminyltransferase 13; EC=2.4.1.41; Polypeptide GalNAc transferase 13; GalNAc-T13; pp-GaNTase 13; Protein-UDP acetylgalactosaminyltransferase 13; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 13;)
genome : 154,728,466 - 155,307,293 (578,828)
query : 1 - 2,428 (2,428/2,428)
13 exons
identity = 0.999
5'(0.997;1.000;0.996;0.994;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.4.1.41
KEGG pathway :
00512 : Mucin type O-Glycan biosynthesis (7)
01100 : Metabolic pathways (1346)
InterPro :
IPR000772 : Ricin B lectin domain
IPR001173 : Glycosyltransferase 2-like
IPR029044 : Nucleotide-diphospho-sugar transferases
SOSUI :
MEMBRANE PROTEIN
PSORT :
golg 15, extr 6, pero 5, E.R. 3, extr_plas 3,
mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
HIX0002516
HIT000532147 (
ENST00000434213
)
(Conserved hypothetical protein.)
genome : 154,728,466 - 154,801,068 (72,603)
query : 1 - 510 (510/510)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
HIX0002516
HIT000336442
(
BC101031
)
Representative transcript
(Polypeptide N-acetylgalactosaminyltransferase 13; EC=2.4.1.41; Polypeptide GalNAc transferase 13; GalNAc-T13; pp-GaNTase 13; Protein-UDP acetylgalactosaminyltransferase 13; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 13;)
genome : 154,801,011 - 155,307,815 (506,805)
query : 1 - 2,423 (2,423/2,423)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.999)3'
coverage = 1.000
EC number :
EC 2.4.1.41
KEGG pathway :
00512 : Mucin type O-Glycan biosynthesis (7)
01100 : Metabolic pathways (1346)
InterPro :
IPR000772 : Ricin B lectin domain
IPR001173 : Glycosyltransferase 2-like
IPR029044 : Nucleotide-diphospho-sugar transferases
SOSUI :
MEMBRANE PROTEIN
PSORT :
golg 15, extr 6, pero 4, E.R. 3, lyso 3, extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK045417
Rattus
sp. (Rat) : AY371923
Bos
sp. (Cow) : BC123662
Equus
sp. (Horse) : ENSECAT00000028928
Oryzias
sp. (Medaka) : ENSORLT00000020870
Pongo
sp. (Orangutan) : ENSPPYT00000014934
Tetraodon
sp. (Tetraodon) : GSTENT00030548001
Takifugu
sp. (Fugu) : SINFRUT00000142594
Danio
sp. (Zebrafish) : XM_001332928
Monodelphis
sp. (Opossum) : XM_001373001
Pan
sp. (Chimpanzee) : XM_515839
Canis
sp. (Dog) : XM_843172
Macaca
sp. (Macaque) : XR_010118
HIX0002516
HIT000336443
(
BC101032
)
(Polypeptide N-acetylgalactosaminyltransferase 13.)
genome : 154,801,011 - 155,307,815 (506,805)
query : 1 - 2,591 (2,591/2,591)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
EC number :
EC 2.4.1.41
KEGG pathway :
00512 : Mucin type O-Glycan biosynthesis (7)
01100 : Metabolic pathways (1346)
InterPro :
IPR000772 : Ricin B lectin domain
IPR001173 : Glycosyltransferase 2-like
IPR029044 : Nucleotide-diphospho-sugar transferases
SOSUI :
MEMBRANE PROTEIN
PSORT :
golg 15, extr 6, E.R. 5, pero 3, extr_plas 3,
E.R._mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
HIX0002516
HIT000336444
(
BC101033
)
(Polypeptide N-acetylgalactosaminyltransferase 13; EC=2.4.1.41; Polypeptide GalNAc transferase 13; GalNAc-T13; pp-GaNTase 13; Protein-UDP acetylgalactosaminyltransferase 13; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 13;)
genome : 154,801,011 - 155,307,815 (506,805)
query : 1 - 2,423 (2,423/2,423)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.999)3'
coverage = 1.000
EC number :
EC 2.4.1.41
KEGG pathway :
00512 : Mucin type O-Glycan biosynthesis (7)
01100 : Metabolic pathways (1346)
InterPro :
IPR000772 : Ricin B lectin domain
IPR001173 : Glycosyltransferase 2-like
IPR029044 : Nucleotide-diphospho-sugar transferases
SOSUI :
MEMBRANE PROTEIN
PSORT :
golg 15, extr 6, pero 4, E.R. 3, lyso 3, extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
HIX0002516
HIT000336445
(
BC101034
)
(Polypeptide N-acetylgalactosaminyltransferase 13; EC=2.4.1.41; Polypeptide GalNAc transferase 13; GalNAc-T13; pp-GaNTase 13; Protein-UDP acetylgalactosaminyltransferase 13; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 13;)
genome : 154,801,011 - 155,307,815 (506,805)
query : 1 - 2,423 (2,423/2,423)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.998)3'
coverage = 1.000
EC number :
EC 2.4.1.41
KEGG pathway :
00512 : Mucin type O-Glycan biosynthesis (7)
01100 : Metabolic pathways (1346)
InterPro :
IPR000772 : Ricin B lectin domain
IPR001173 : Glycosyltransferase 2-like
IPR029044 : Nucleotide-diphospho-sugar transferases
SOSUI :
MEMBRANE PROTEIN
PSORT :
golg 15, extr 6, pero 4, E.R. 3, lyso 3, extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
HIX0002516
HIT000507270 (
ENST00000409237
)
(Polypeptide N-acetylgalactosaminyltransferase 13.)
genome : 154,801,011 - 155,307,815 (506,805)
query : 1 - 2,591 (2,591/2,591)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.4.1.41
KEGG pathway :
00512 : Mucin type O-Glycan biosynthesis (7)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
golg 15, extr 6, E.R. 5, pero 3, extr_plas 3,
E.R._mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
HIX0002516
HIT000061327
(
AB078142
)
(Polypeptide N-acetylgalactosaminyltransferase 13; EC=2.4.1.41; Polypeptide GalNAc transferase 13; GalNAc-T13; pp-GaNTase 13; Protein-UDP acetylgalactosaminyltransferase 13; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 13;)
genome : 154,801,011 - 155,307,063 (506,053)
query : 1 - 1,671 (1,671/1,671)
11 exons
identity = 0.999
5'(0.993;0.994;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.4.1.41
KEGG pathway :
00512 : Mucin type O-Glycan biosynthesis (7)
01100 : Metabolic pathways (1346)
InterPro :
IPR000772 : Ricin B lectin domain
IPR001173 : Glycosyltransferase 2-like
IPR029044 : Nucleotide-diphospho-sugar transferases
SOSUI :
MEMBRANE PROTEIN
PSORT :
golg 15, extr 6, pero 5, E.R. 3, extr_plas 3,
mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
HIX0002516
HIT000248331
(
AJ505991
)
(Polypeptide N-acetylgalactosaminyltransferase 13; EC=2.4.1.41; Polypeptide GalNAc transferase 13; GalNAc-T13; pp-GaNTase 13; Protein-UDP acetylgalactosaminyltransferase 13; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 13;)
genome : 154,801,011 - 155,307,063 (506,053)
query : 1 - 1,671 (1,671/1,671)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.4.1.41
KEGG pathway :
00512 : Mucin type O-Glycan biosynthesis (7)
01100 : Metabolic pathways (1346)
InterPro :
IPR000772 : Ricin B lectin domain
IPR001173 : Glycosyltransferase 2-like
IPR029044 : Nucleotide-diphospho-sugar transferases
SOSUI :
MEMBRANE PROTEIN
PSORT :
golg 15, extr 6, pero 4, E.R. 3, lyso 3, extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
HIX0002516
HIT000001633
(
AB067505
)
(Polypeptide N-acetylgalactosaminyltransferase 13.)
genome : 154,801,129 - 155,310,488 (509,360)
query : 1 - 4,978 (4,978/4,978)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.999)3'
coverage = 1.000
EC number :
EC 2.4.1.41
KEGG pathway :
00512 : Mucin type O-Glycan biosynthesis (7)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 13.5, nucl 5.5, extr 4, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
HIX0002516
HIT000427541
(
AK308675
)
(Polypeptide N-acetylgalactosaminyltransferase 13.)
genome : 154,996,854 - 155,265,852 (268,999)
query : 1 - 1,642 (1,642/1,642)
9 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.997)3'
coverage = 1.000
EC number :
EC 2.4.1.41
KEGG pathway :
00512 : Mucin type O-Glycan biosynthesis (7)
01100 : Metabolic pathways (1346)
InterPro :
IPR000772 : Ricin B lectin domain
IPR001173 : Glycosyltransferase 2-like
IPR029044 : Nucleotide-diphospho-sugar transferases
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 18, cyto 10, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
HIX0002516
HIT000529010 (
ENST00000431076
)
(Polypeptide N-acetylgalactosaminyltransferase 13.)
genome : 154,996,854 - 155,265,852 (268,999)
query : 1 - 1,642 (1,642/1,642)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.4.1.41
KEGG pathway :
00512 : Mucin type O-Glycan biosynthesis (7)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 17, cyto 11, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
HIX0215104
HIT000694858 (
ENST00000582975
)
(Conserved hypothetical protein.)
genome : 155,002,618 - 155,002,720 (103)
query : 1 - 103 (103/103)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215104)
HIX0214968
HIT000474250 (
ENST00000390712
)
(Hypothetical short protein.)
genome : 155,088,231 - 155,088,342 (112)
query : 1 - 112 (112/112)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214968)
HIX0002516
HIT000590767 (
ENST00000487047
)
(Polypeptide N-acetylgalactosaminyltransferase 3; EC=2.4.1.41; GalNAc-T1; Protein-UDP acetylgalactosaminyltransferase 3; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 3; pp-GaNTase 3;)
genome : 155,114,080 - 155,295,188 (181,109)
query : 1 - 782 (782/782)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.4.1.41
KEGG pathway :
00512 : Mucin type O-Glycan biosynthesis (7)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, extr 11, cyto_nucl 9.5, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
HIX0162800
HIT000535381 (
ENST00000437447
)
(Conserved hypothetical protein.)
genome : 155,143,102 - 155,143,938 (837)
query : 1 - 837 (837/837)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 11, nucl 10.5, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162800)
HIX0030682
HIT000328316
(
Z97017
)
Representative transcript
(Conserved hypothetical protein.)
genome : 155,153,258 - 155,154,839 (1,582)
query : 1 - 1,585 (1,585/1,755)
1 exon
identity = 0.991
3'(0.991)5'
coverage = 0.903
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24, plas 3, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030682)
HIX0002516
HIT000548772 (
ENST00000450838
)
(Conserved hypothetical protein.)
genome : 155,252,499 - 155,307,242 (54,744)
query : 8 - 606 (599/606)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.988
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
HIX0002516
HIT000520060 (
ENST00000422126
)
(Polypeptide N-acetylgalactosaminyltransferase 13.)
genome : 155,265,523 - 155,307,305 (41,783)
query : 1 - 528 (528/528)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.4.1.41
KEGG pathway :
00512 : Mucin type O-Glycan biosynthesis (7)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
HIX0018410
HIT000015780
(
AK090913
)
Representative transcript
(Conserved hypothetical protein.)
genome : 155,292,365 - 155,313,950 (21,586)
query : 2 - 2,363 (2,362/2,363)
5 exons
identity = 0.994
3'(0.993;1.000;1.000;0.991;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, cyto 9, cyto_nucl 8.33333, cyto_pero 6,
nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018410)
HIX0018410
HIT000532569 (
ENST00000434635
)
(Conserved hypothetical protein.)
genome : 155,292,365 - 155,313,950 (21,586)
query : 1 - 2,362 (2,362/2,362)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto_nucl 5, nucl 4, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018410)
HIX0018410
HIT000723621 (
NM_001256368
)
(Conserved hypothetical protein.)
genome : 155,292,365 - 155,313,950 (21,586)
query : 1 - 2,362 (2,362/2,362)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto_nucl 5, nucl 4, cyto 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018410)
HIX0002516
HIT000551649 (
ENST00000453715
)
(Polypeptide N-acetylgalactosaminyltransferase 13.)
genome : 155,295,104 - 155,307,257 (12,154)
query : 1 - 668 (668/668)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.4.1.41
KEGG pathway :
00512 : Mucin type O-Glycan biosynthesis (7)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 6.5, cyto_nucl 5.5, nucl 3.5, cysk 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
HIX0002516
HIT000593153 (
ENST00000489553
)
(Conserved hypothetical protein.)
genome : 155,298,233 - 155,307,313 (9,081)
query : 1 - 483 (483/483)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
HIX0002516
HIT000427481
(
AK308615
)
(Conserved hypothetical protein.)
genome : 155,302,990 - 155,307,913 (4,924)
query : 1 - 1,279 (1,279/1,279)
2 exons
identity = 0.998
5'(1.000;0.998)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
HIX0002516
HIT000598193 (
ENST00000494805
)
(Conserved hypothetical protein.)
genome : 155,302,990 - 155,307,206 (4,217)
query : 1 - 572 (572/572)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002516)
HIX0162679
HIT000530533 (
ENST00000432599
)
(Hypothetical short protein.)
genome : 155,316,369 - 155,317,332 (964)
query : 1 - 511 (511/511)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 3.5, cyto_nucl 3, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162679)
HIX0162947
HIT000541835 (
ENST00000443901
)
(Hypothetical protein.)
genome : 155,552,974 - 155,554,329 (1,356)
query : 1 - 432 (432/432)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162947)
HIX0214865
HIT000724345 (
NM_001260510
)
(Potassium channel, inwardly rectifying, Kir family protein.)
genome : 155,555,093 - 155,556,103 (1,011)
query : 1 - 1,011 (1,011/1,011)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, nucl 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214865)
HIX0214865
HIT000648473
(
GU074516
)
Representative transcript
(Potassium channel, inwardly rectifying, Kir family protein.)
genome : 155,555,264 - 155,556,103 (840)
query : 1 - 840 (840/840)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR003274 : Potassium channel, inwardly rectifying, Kir3.1
IPR013518 : Potassium channel, inwardly rectifying, Kir, cytoplasmic
IPR016449 : Potassium channel, inwardly rectifying, Kir
GO :
0005242 : Molecular Function : inward rectifier potassium channel activity
0006813 : Biological Process : potassium ion transport
0015467 : Molecular Function : G-protein activated inward rectifier potassium channel activity
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214865)
HIX0214782
HIT000488548
(
AK293924
)
Representative transcript
(Potassium channel, inwardly rectifying, Kir family protein.)
genome : 155,565,844 - 155,712,407 (146,564)
query : 1 - 1,432 (1,432/1,432)
3 exons
identity = 0.998
5'(1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR003274 : Potassium channel, inwardly rectifying, Kir3.1
IPR013518 : Potassium channel, inwardly rectifying, Kir, cytoplasmic
IPR014756 : Immunoglobulin E-set
IPR016449 : Potassium channel, inwardly rectifying, Kir
GO :
0005242 : Molecular Function : inward rectifier potassium channel activity
0006813 : Biological Process : potassium ion transport
0015467 : Molecular Function : G-protein activated inward rectifier potassium channel activity
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 16, cyto 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214782)
HIX0214782
HIT000596940 (
ENST00000493505
)
(Potassium channel, inwardly rectifying, Kir family protein.)
genome : 155,565,844 - 155,711,540 (145,697)
query : 1 - 564 (564/564)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 20, cyto 15.5, nucl 13.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214782)
HIX0018084
HIT000009658
(
AK026384
)
Representative transcript
(Conserved hypothetical protein.)
genome : 155,713,375 - 155,714,864 (1,490)
query : 1 - 1,468 (1,468/1,486)
1 exon
identity = 0.982
5'(0.982)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 6.5, cyto_pero 4.5, nucl 4, golg 2,
mito_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018084)
HIX0161815
HIT000528191 (
ENST00000430257
)
(Chromo domain containing protein.)
genome : 155,797,053 - 155,797,579 (527)
query : 1 - 527 (527/527)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161815)
HIX0162922
HIT000540640 (
ENST00000442706
)
(Hypothetical short protein.)
genome : 155,822,025 - 155,824,515 (2,491)
query : 1 - 393 (393/393)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162922)
HIX0002517
HIT000114058 (
ENST00000295101
)
(G protein-activated inward rectifier potassium channel 1; GIRK-1; Inward rectifier K(+) channel Kir3.1; Potassium channel, inwardly rectifying subfamily J member 3;)
genome : 155,554,811 - 155,714,863 (160,053)
query : 1 - 5,021 (5,021/5,021)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002517)
HIX0002517
HIT000199155 (
NM_002239
)
(G protein-activated inward rectifier potassium channel 1; GIRK-1; Inward rectifier K(+) channel Kir3.1; Potassium channel, inwardly rectifying subfamily J member 3;)
genome : 155,555,093 - 155,714,864 (159,772)
query : 1 - 4,740 (4,740/4,740)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002517)
HIX0002517
HIT000724343 (
NM_001260508
)
(G protein-activated inward rectifier potassium channel 1 isoform 2.)
genome : 155,555,093 - 155,714,864 (159,772)
query : 1 - 4,523 (4,523/4,523)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002517)
HIX0002517
HIT000220191
(
U50964
)
Representative transcript
(G protein-activated inward rectifier potassium channel 1; GIRK-1; Inward rectifier K(+) channel Kir3.1; Potassium channel, inwardly rectifying subfamily J member 3;)
genome : 155,555,093 - 155,712,971 (157,879)
query : 1 - 2,849 (2,849/2,861)
3 exons
identity = 0.998
5'(0.999;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR003274 : Potassium channel, inwardly rectifying, Kir3.1
IPR013518 : Potassium channel, inwardly rectifying, Kir, cytoplasmic
IPR014756 : Immunoglobulin E-set
IPR016449 : Potassium channel, inwardly rectifying, Kir
GO :
0005242 : Molecular Function : inward rectifier potassium channel activity
0006813 : Biological Process : potassium ion transport
0015467 : Molecular Function : G-protein activated inward rectifier potassium channel activity
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002517)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC068167
Danio
sp. (Zebrafish) : ENSDART00000065372
Oryzias
sp. (Medaka) : ENSORLT00000020877
Pongo
sp. (Orangutan) : ENSPPYT00000014935
Tetraodon
sp. (Tetraodon) : GSTENT00030549001
Gallus
sp. (Chicken) : L35555
Takifugu
sp. (Fugu) : SINFRUT00000142587
Rattus
sp. (Rat) : U72410
Pan
sp. (Chimpanzee) : XM_001141809
Monodelphis
sp. (Opossum) : XM_001365699
Canis
sp. (Dog) : XM_545477
Bos
sp. (Cow) : XM_604447
HIX0002517
HIT000724344 (
NM_001260509
)
(G protein-activated inward rectifier potassium channel 1 isoform 3.)
genome : 155,555,093 - 155,566,362 (11,270)
query : 1 - 1,145 (1,145/1,145)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002517)
HIX0002517
HIT000488448
(
AK293824
)
(G protein-activated inward rectifier potassium channel 1; GIRK-1; Inward rectifier K(+) channel Kir3.1; Potassium channel, inwardly rectifying subfamily J member 3;)
genome : 155,555,215 - 155,711,558 (156,344)
query : 1 - 1,095 (1,095/1,095)
2 exons
identity = 0.999
5'(1.000;0.997)3'
coverage = 1.000
InterPro :
IPR003274 : Potassium channel, inwardly rectifying, Kir3.1
IPR013518 : Potassium channel, inwardly rectifying, Kir, cytoplasmic
IPR016449 : Potassium channel, inwardly rectifying, Kir
GO :
0005242 : Molecular Function : inward rectifier potassium channel activity
0006813 : Biological Process : potassium ion transport
0015467 : Molecular Function : G-protein activated inward rectifier potassium channel activity
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002517)
HIX0002517
HIT000643094 (
ENST00000544049
)
(G protein-activated inward rectifier potassium channel 1; GIRK-1; Inward rectifier K(+) channel Kir3.1; Potassium channel, inwardly rectifying subfamily J member 3;)
genome : 155,555,215 - 155,711,558 (156,344)
query : 1 - 1,095 (1,095/1,095)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002517)
HIX0002517
HIT000039580
(
BC022495
)
(G protein-activated inward rectifier potassium channel 1; GIRK-1; Inward rectifier K(+) channel Kir3.1; Potassium channel, inwardly rectifying subfamily J member 3;)
genome : 155,555,258 - 155,712,971 (157,714)
query : 1 - 2,683 (2,683/2,697)
3 exons
identity = 0.998
5'(0.999;0.991;0.998)3'
coverage = 1.000
InterPro :
IPR003274 : Potassium channel, inwardly rectifying, Kir3.1
IPR013518 : Potassium channel, inwardly rectifying, Kir, cytoplasmic
IPR014756 : Immunoglobulin E-set
IPR016449 : Potassium channel, inwardly rectifying, Kir
GO :
0005242 : Molecular Function : inward rectifier potassium channel activity
0006813 : Biological Process : potassium ion transport
0015467 : Molecular Function : G-protein activated inward rectifier potassium channel activity
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002517)
HIX0002517
HIT000648472
(
GU074515
)
(G protein-activated inward rectifier potassium channel 1 isoform 2.)
genome : 155,555,264 - 155,711,851 (156,588)
query : 1 - 1,339 (1,339/1,339)
2 exons
identity = 0.999
5'(1.000;0.998)3'
coverage = 1.000
InterPro :
IPR003274 : Potassium channel, inwardly rectifying, Kir3.1
IPR013518 : Potassium channel, inwardly rectifying, Kir, cytoplasmic
IPR016449 : Potassium channel, inwardly rectifying, Kir
GO :
0005242 : Molecular Function : inward rectifier potassium channel activity
0006813 : Biological Process : potassium ion transport
0015467 : Molecular Function : G-protein activated inward rectifier potassium channel activity
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002517)
HIX0002517
HIT000648465
(
GU068048
)
(G protein-activated inward rectifier potassium channel 1 isoform 3.)
genome : 155,555,264 - 155,566,362 (11,099)
query : 1 - 974 (974/974)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003274 : Potassium channel, inwardly rectifying, Kir3.1
IPR013518 : Potassium channel, inwardly rectifying, Kir, cytoplasmic
IPR014756 : Immunoglobulin E-set
IPR016449 : Potassium channel, inwardly rectifying, Kir
GO :
0005242 : Molecular Function : inward rectifier potassium channel activity
0006813 : Biological Process : potassium ion transport
0015467 : Molecular Function : G-protein activated inward rectifier potassium channel activity
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002517)
AC110807.3
154500001-154553757 F +
NCBI
AC068537.5
154553758-154585555 F +
NCBI
AC092584.2
154585556-154742590 F +
NCBI
AC133107.2
154742591-154861529 F +
NCBI
AC092589.2
154861530-154911234 F +
NCBI
AC008166.2
154911235-155088025 F +
NCBI
AC009297.4
155088026-155179570 F +
NCBI
AC009227.3
155179571-155353519 F +
NCBI
AC010730.11
155353520-155519470 F +
NCBI
AC061961.6
155519471-155588710 F -
NCBI
AC107060.5
155588711-155590823 F +
NCBI
AC093633.3
155590824-155761889 F +
NCBI
AC093112.4
155761890-155819303 F +
NCBI
AC092625.2
155819304-155877607 F +
NCBI
AC079256.5
155877608-156031676 F +
NCBI
AC096578.1
156031677-156038396 F +
NCBI
AC092662.2
156038397-156100000 F +
NCBI