bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0031446
HIT000028361
(
AL833449
)
(Conserved hypothetical protein.)
genome : 124,571,422 - 124,589,231 (17,810)
query : 2 - 6,507 (6,506/6,527)
3 exons
identity = 0.996
5'(1.000;1.000;0.996)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 12, extr 6, nucl 3.5, golg 3,
extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031446)
HIX0031446
HIT000614292 (
ENST00000514823
)
(Conserved hypothetical protein.)
genome : 124,571,422 - 124,587,987 (16,566)
query : 1 - 5,262 (5,262/5,262)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 10.5, extr 5, mito 4, golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031446)
HIX0031446
HIT000608061 (
ENST00000508111
)
(Hypothetical short protein.)
genome : 124,571,446 - 124,851,552 (280,107)
query : 1 - 636 (636/645)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 13, nucl 2, mito 2, golg 2, mito_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031446)
HIX0031446
HIT000611611 (
ENST00000511919
)
(Hypothetical short protein.)
genome : 124,571,446 - 124,851,509 (280,064)
query : 1 - 590 (590/590)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 13, nucl 2, mito 2, golg 2, mito_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031446)
HIX0031446
HIT000563264 (
NR_027105
)
(Conserved hypothetical protein.)
genome : 124,573,940 - 124,851,518 (277,579)
query : 1 - 562 (562/562)
5 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.991)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 13, nucl 2, mito 2, golg 2, mito_nucl 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031446)
HIX0164183
HIT000537499 (
ENST00000439565
)
(Hypothetical short protein.)
genome : 124,666,078 - 124,666,828 (751)
query : 1 - 477 (477/477)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0164183)
HIX0164134
HIT000515632 (
ENST00000417698
)
(Conserved hypothetical protein.)
genome : 124,666,905 - 124,667,381 (477)
query : 1 - 477 (477/477)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0164134)
HIX0031446
HIT000093078
(
BC033378
)
Representative transcript
(Hypothetical protein.)
genome : 124,695,419 - 124,786,728 (91,310)
query : 1 - 2,205 (2,205/2,223)
3 exons
identity = 0.999
5'(1.000;1.000;0.998)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031446)
HIX0031446
HIT000098392
(
BC046914
)
(Hypothetical protein.)
genome : 124,695,419 - 124,786,728 (91,310)
query : 1 - 2,205 (2,205/2,223)
3 exons
identity = 0.999
5'(1.000;1.000;0.998)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031446)
HIX0031446
HIT000259372
(
BC053945
)
(Conserved hypothetical protein.)
genome : 124,695,419 - 124,786,728 (91,310)
query : 1 - 2,205 (2,205/2,223)
3 exons
identity = 0.999
5'(1.000;1.000;0.998)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031446)
HIX0031446
HIT000563265 (
NR_027106
)
(Conserved hypothetical protein.)
genome : 124,695,419 - 124,786,730 (91,312)
query : 1 - 2,206 (2,206/2,222)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031446)
HIX0031446
HIT000615178 (
ENST00000515769
)
(Conserved hypothetical protein.)
genome : 124,695,419 - 124,786,728 (91,310)
query : 1 - 2,204 (2,204/2,204)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031446)
HIX0205484
HIT000604732 (
ENST00000504523
)
(Non-protein coding transcript.)
genome : 124,783,015 - 124,783,170 (156)
query : 1 - 156 (156/156)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205484)
HIX0195904
HIT000522626 (
ENST00000424692
)
(Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain containing protein.)
genome : 124,983,617 - 124,984,145 (529)
query : 1 - 529 (529/529)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto_nucl 10.5, cyto 8.5, nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0195904)
HIX0205626
HIT000607298 (
ENST00000507299
)
(Hypothetical short protein.)
genome : 125,070,532 - 125,173,199 (102,668)
query : 1 - 430 (430/430)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, cyto 10, extr 5, cyto_pero 5, cyto_plas 5,
cyto_golg 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205626)
HIX0205235
eHIT000017882 ( ESTsASS_4_801 )
Representative transcript
(Non-protein coding transcript.)
genome : 125,263,326 - 125,341,455 (78,130)
query : 1 - 319 (319/319)
4 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205235)
ESTs used for assembly :
BF437727
HIX0205583
HIT000606545 (
ENST00000506481
)
(Alpha tubulin family protein.)
genome : 125,356,905 - 125,358,275 (1,371)
query : 1 - 1,371 (1,371/1,371)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 9, nucl 4, mito 4, mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205583)
HIX0205413
HIT000603569 (
ENST00000503270
)
(3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein.)
genome : 125,384,018 - 125,384,945 (928)
query : 1 - 928 (928/928)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 7, plas 6, E.R. 6, cyto_nucl 6, mito_nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205413)
HIX0017330
HIT000014069
(
AK057455
)
Representative transcript
(Conserved hypothetical protein.)
genome : 125,421,097 - 125,479,589 (58,493)
query : 1 - 1,771 (1,771/1,771)
9 exons
identity = 0.998
3'(0.998;0.994;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017330)
HIX0017330
HIT000676867 (
ENST00000563724
)
(Hypothetical short protein.)
genome : 125,421,097 - 125,479,589 (58,493)
query : 1 - 1,771 (1,771/1,771)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017330)
HIX0004487
HIT000024397
(
AL110131
)
(Conserved hypothetical protein.)
genome : 125,585,214 - 125,588,084 (2,871)
query : 1 - 2,873 (2,873/2,895)
1 exon
identity = 0.995
3'(0.995)5'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, plas 3, E.R. 3, mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004487)
HIX0004487
HIT000366884 (
NM_020337
)
(Ankyrin repeat domain-containing protein 50;)
genome : 125,585,203 - 125,633,887 (48,685)
query : 1 - 8,798 (8,798/8,802)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 16.5, nucl 14
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004487)
HIX0004487
HIT000604332 (
ENST00000504087
)
(Ankyrin repeat domain-containing protein 50;)
genome : 125,585,207 - 125,633,887 (48,681)
query : 1 - 8,794 (8,794/8,794)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 16.5, nucl 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004487)
HIX0004487
HIT000654464 (
NM_001167882
)
(Ankyrin repeat domain-containing protein 50;)
genome : 125,585,207 - 125,633,887 (48,681)
query : 1 - 7,519 (7,519/7,519)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 16, cyto 9, extr 2, mito 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004487)
HIX0004487
HIT000000939
(
AB033049
)
(Ankyrin repeat domain-containing protein 50;)
genome : 125,585,207 - 125,593,413 (8,207)
query : 1 - 6,738 (6,738/6,738)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 14.5, cyto 5.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004487)
HIX0031364
HIT000066042
(
AF075020
)
Representative transcript
(Hypothetical protein.)
genome : 125,585,643 - 125,586,269 (627)
query : 1 - 627 (627/627)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 17, cyto 8, mito 2.5, E.R._mito 2.5, E.R. 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031364)
HIX0004487
HIT000423865
(
AK291068
)
Representative transcript
(Ankyrin repeat domain-containing protein 50;)
genome : 125,588,351 - 125,633,887 (45,537)
query : 1 - 5,650 (5,650/5,650)
5 exons
identity = 0.999
3'(1.000;0.999;1.000;0.998;0.996)5'
coverage = 1.000
InterPro :
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 16.5, nucl 14
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004487)
Ortholog candidate ( ->
Evola
)
Monodelphis
sp. (Opossum) : ENSMODT00000023980
Pongo
sp. (Orangutan) : ENSPPYT00000017494
Takifugu
sp. (Fugu) : SINFRUT00000142111
Rattus
sp. (Rat) : XM_001069855
Macaca
sp. (Macaque) : XM_001104758
Danio
sp. (Zebrafish) : XM_001334305
Equus
sp. (Horse) : XM_001502891
Pan
sp. (Chimpanzee) : XM_517429
Bos
sp. (Cow) : XM_606363
Canis
sp. (Dog) : XM_851745
HIX0004487
HIT000489759
(
AK295135
)
(Ankyrin repeat domain-containing protein 50;)
genome : 125,588,514 - 125,633,887 (45,374)
query : 1 - 4,212 (4,212/4,212)
4 exons
identity = 1.000
3'(1.000;0.999;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 16, cyto 9, extr 2, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004487)
HIX0004487
HIT000615056 (
ENST00000515641
)
(Ankyrin repeat domain-containing protein 50;)
genome : 125,588,514 - 125,633,887 (45,374)
query : 1 - 4,212 (4,212/4,212)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 16, cyto 9, extr 2, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004487)
HIX0004487
HIT000055223
(
BX640674
)
(Ankyrin repeat domain-containing protein 50;)
genome : 125,588,588 - 125,631,221 (42,634)
query : 1 - 3,930 (3,930/3,949)
4 exons
identity = 0.998
3'(1.000;0.998;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 16, cyto 9, extr 2, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004487)
HIX0004487
HIT000039830
(
BC024725
)
(Ankyrin repeat domain-containing protein 50;)
genome : 125,588,586 - 125,592,493 (3,908)
query : 1 - 2,439 (2,439/2,453)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 15.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004487)
HIX0004487
HIT000016383
(
AK091516
)
(Ankyrin repeat domain-containing protein 50;)
genome : 125,588,580 - 125,593,485 (4,906)
query : 1 - 3,438 (3,438/3,438)
2 exons
identity = 0.999
3'(1.000;0.999)5'
coverage = 1.000
InterPro :
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 13.5, cyto 7.5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004487)
HIX0004487
HIT000047369
(
AK127496
)
(Ankyrin repeat domain-containing protein 50;)
genome : 125,588,587 - 125,631,555 (42,969)
query : 1 - 4,265 (4,265/4,265)
4 exons
identity = 0.999
3'(1.000;0.999;1.000;0.998)5'
coverage = 1.000
InterPro :
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 11, cyto 9, cyto_pero 7.33333,
mito 6, E.R._mito 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004487)
HIX0205235
eHIT000017882 ( ESTsASS_4_801 )
Representative transcript
(Non-protein coding transcript.)
genome : 125,263,326 - 125,341,455 (78,130)
query : 1 - 319 (319/319)
4 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205235)
ESTs used for assembly :
BF437727
AC092543.3
124500001-124515964 F +
NCBI
AC096732.3
124515965-124696775 F +
NCBI
AC093767.2
124696776-124844280 F +
NCBI
AC108075.3
124844281-125010071 F +
NCBI
AC107061.6
125010072-125118612 F +
NCBI
AC121154.3
125118613-125208957 F +
NCBI
AC133530.3
125208958-125294304 F +
NCBI
AC097474.3
125294305-125448887 F +
NCBI
AC110618.3
125448888-125520983 F +
NCBI
AC105421.2
125520984-125681776 F +
NCBI
AC097472.2
125681777-125826255 F +
NCBI
AC093825.2
125826256-125973646 F +
NCBI
AC079856.7
125973647-126100000 F +
NCBI