bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0206525
HIT000603014 (
ENST00000502680
)
(Hypothetical short protein.)
genome : 15,112,486 - 15,117,116 (4,631)
query : 1 - 822 (822/822)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 18.5, cyto_plas 12.5, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0206525)
HIX0032355
HIT000086159
(
BC002741
)
Representative transcript
(Hypothetical protein.)
genome : 15,191,755 - 15,266,669 (74,915)
query : 1 - 1,070 (1,070/1,092)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 20, extr_plas 3, plas 2.5, extr 2.5, nucl 2,
cyto 2, cyto_nucl 2, pero 2, cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032355)
HIX0032355
HIT000611162 (
ENST00000511443
)
(Hypothetical short protein.)
genome : 15,192,248 - 15,266,650 (74,403)
query : 1 - 558 (558/558)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, mito 9, nucl 8, cyto_nucl 6.5, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032355)
HIX0206784
HIT000607632 (
ENST00000507649
)
(Hypothetical short protein.)
genome : 15,384,329 - 15,384,962 (634)
query : 1 - 634 (634/634)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 15.5, cyto 6, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0206784)
HIX0206507
HIT000602670 (
ENST00000502306
)
(Actin family protein.)
genome : 15,450,810 - 15,451,920 (1,111)
query : 1 - 1,111 (1,111/1,111)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 7.83333, cyto 6.5, nucl 5,
cyto_pero 4.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0206507)
HIX0004762
HIT000265568
(
BC075061
)
Representative transcript
(F-box domain containing protein.)
genome : 15,500,737 - 15,937,322 (436,586)
query : 1 - 1,552 (1,552/1,552)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR006553 : Leucine-rich repeat, cysteine-containing subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 10, nucl 5.5, extr 5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004762)
HIX0004762
HIT000073713
(
AF199356
)
(F-box domain containing protein.)
genome : 15,500,782 - 15,937,295 (436,514)
query : 1 - 1,480 (1,480/1,480)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR006553 : Leucine-rich repeat, cysteine-containing subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 10, nucl 5.5, extr 5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004762)
HIX0004762
HIT000428451
(
AK309585
)
(F-box domain containing protein.)
genome : 15,501,547 - 15,937,328 (435,782)
query : 1 - 1,758 (1,758/1,758)
4 exons
identity = 0.999
5'(0.997;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR006553 : Leucine-rich repeat, cysteine-containing subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16.5, cyto_mito 11.3333, nucl 9, cyto_nucl 8,
cyto 4.5, cyto_pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004762)
HIX0004762
HIT000610431 (
ENST00000510662
)
(F-box domain containing protein.)
genome : 15,501,547 - 15,937,328 (435,782)
query : 1 - 1,758 (1,758/1,758)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16.5, cyto_mito 11.3333, nucl 9, cyto_nucl 8,
cyto 4.5, cyto_pero 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004762)
HIX0206259
HIT000610249 (
ENST00000510456
)
(Hypothetical short protein.)
genome : 15,602,298 - 15,607,457 (5,160)
query : 1 - 360 (360/360)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0206259)
HIX0206259
HIT000609105 (
ENST00000509228
)
(Non-protein coding transcript.)
genome : 15,606,869 - 15,607,358 (490)
query : 1 - 362 (362/362)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0206259)
HIX0004762
HIT000072603
(
AF174593
)
(F-box domain containing protein.)
genome : 15,616,091 - 15,937,295 (321,205)
query : 13 - 1,452 (1,440/1,452)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.992
InterPro :
IPR001810 : F-box domain
IPR006553 : Leucine-rich repeat, cysteine-containing subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, cyto 13.5, nucl 12.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004762)
HIX0004762
HIT000126239 (
ENST00000329673
)
(F-box domain containing protein.)
genome : 15,616,091 - 15,937,295 (321,205)
query : 1 - 1,440 (1,440/1,440)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 15, nucl 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004762)
HIX0032305
HIT000005259
(
AK021985
)
Representative transcript
(Conserved hypothetical protein.)
genome : 15,642,970 - 15,644,413 (1,444)
query : 1 - 1,444 (1,444/1,444)
1 exon
identity = 0.992
5'(0.992)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 8, nucl 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032305)
HIX0004764
HIT000005206
(
AK021932
)
Representative transcript
(Conserved hypothetical protein.)
genome : 15,675,993 - 15,677,607 (1,615)
query : 1 - 1,615 (1,615/1,617)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, cyto 2.5, cyto_nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004764)
HIX0032368
HIT000088239
(
BC013940
)
Representative transcript
(Hypothetical short protein.)
genome : 15,775,820 - 15,777,142 (1,323)
query : 4 - 1,326 (1,323/1,355)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 9, mito 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032368)
HIX0206307
eHIT000019155 ( ESTsASS_5_1006 )
Representative transcript
(Non-protein coding transcript.)
genome : 15,885,397 - 15,902,215 (16,819)
query : 1 - 657 (657/657)
5 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0206307)
ESTs used for assembly :
CF140707,FN156254,CF122220 Ortholog candidate ( ->
Evola
)
Pan
sp. (Chimpanzee) : XM_001148670
HIX0121757
HIT000484122 (
ENST00000401258
)
(Non-protein coding transcript.)
genome : 15,935,291 - 15,935,369 (79)
query : 1 - 79 (79/79)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0121757)
HIX0121757
HIT000658426 (
NR_030616
)
(Non-protein coding transcript.)
genome : 15,935,291 - 15,935,369 (79)
query : 1 - 79 (79/79)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0121757)
HIX0216483
HIT000004945
(
AK021671
)
Representative transcript
(Hypothetical protein.)
genome : 15,938,371 - 15,939,900 (1,530)
query : 1 - 1,530 (1,530/1,530)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto_nucl 4.5, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216483)
HIX0216546
HIT000508385 (
ENST00000410380
)
(Hypothetical short protein.)
genome : 16,033,338 - 16,033,465 (128)
query : 1 - 128 (128/128)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
This sequence is too short.
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216546)
HIX0032085
HIT000127786 (
ENST00000332432
)
(Zinc finger, RING-CH-type domain containing protein.)
genome : 16,067,248 - 16,179,884 (112,637)
query : 1 - 1,741 (1,741/1,741)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 7.5, cyto 7, nucl 6, extr_plas 5, cyto_mito 5,
cyto_pero 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032085)
HIX0032085
HIT000607125 (
ENST00000507111
)
(Conserved hypothetical protein.)
genome : 16,067,423 - 16,177,938 (110,516)
query : 1 - 584 (584/584)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 9, extr 7, mito 7, nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032085)
HIX0032085
HIT000485639 (
NM_001102562
)
(Zinc finger, RING-CH-type domain containing protein.)
genome : 16,067,474 - 16,179,897 (112,424)
query : 1 - 1,528 (1,528/1,528)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 7.5, cyto 7, nucl 6, extr_plas 5, cyto_mito 5,
cyto_pero 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032085)
HIX0032085
eHIT000018304 ( ESTsASS_5_155 )
(Non-protein coding transcript.)
genome : 16,067,474 - 16,179,567 (112,094)
query : 1 - 1,197 (1,197/1,197)
4 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032085)
ESTs used for assembly :
BX332938,BX332939
HIX0032085
HIT000435836
(
BC150513
)
(Conserved hypothetical protein.)
genome : 16,067,536 - 16,091,226 (23,691)
query : 1 - 595 (595/597)
2 exons
identity = 0.998
3'(1.000;0.996)5'
coverage = 0.997
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032085)
HIX0032085
HIT000435837
(
BC150514
)
Representative transcript
(Conserved hypothetical protein.)
genome : 16,067,536 - 16,091,226 (23,691)
query : 1 - 596 (596/598)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.997
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032085)
HIX0032085
HIT000605636 (
ENST00000505509
)
(Zinc finger, RING-CH-type domain containing protein.)
genome : 16,090,996 - 16,180,871 (89,876)
query : 1 - 469 (469/469)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10, plas 8, nucl 5, cyto_pero 5, mito 4,
cysk_plas 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032085)
HIX0206533
HIT000603160 (
ENST00000502834
)
(Hypothetical short protein.)
genome : 16,129,287 - 16,141,711 (12,425)
query : 1 - 708 (708/708)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_nucl 8.33333, nucl 8, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0206533)
HIX0032468
HIT000097470
(
BC043001
)
Representative transcript
(Conserved hypothetical protein.)
genome : 16,180,347 - 16,185,680 (5,334)
query : 7 - 2,056 (2,050/2,071)
2 exons
identity = 0.996
5'(0.995;0.996)3'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 4, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032468)
HIX0032468
HIT000608926 (
ENST00000509037
)
(Conserved hypothetical protein.)
genome : 16,180,347 - 16,185,680 (5,334)
query : 1 - 2,052 (2,052/2,066)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 4, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032468)
HIX0206868
HIT000609430 (
ENST00000509572
)
(Conserved hypothetical protein.)
genome : 16,192,197 - 16,192,818 (622)
query : 1 - 622 (622/622)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, nucl 5, cyto_nucl 4.5, extr 3, cyto 2,
golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0206868)
HIX0121532
HIT000462473
(
DQ595942
)
Representative transcript
(Non-protein coding transcript.)
genome : 16,193,800 - 16,193,829 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0121532)
HIX0200803
HIT000097103
(
BC042074
)
Representative transcript
(Conserved hypothetical protein.)
genome : 16,373,470 - 16,440,190 (66,721)
query : 16 - 2,135 (2,120/2,190)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.995)5'
coverage = 0.993
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 16, cyto 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200803)
HIX0200803
HIT000612752 (
ENST00000513157
)
(Conserved hypothetical protein.)
genome : 16,373,470 - 16,440,190 (66,721)
query : 1 - 2,120 (2,120/2,120)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 16, cyto 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200803)
HIX0207064
HIT000612643 (
ENST00000513041
)
(Conserved hypothetical protein.)
genome : 16,428,645 - 16,432,545 (3,901)
query : 1 - 458 (458/458)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, mito 9, cyto 5.5, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207064)
HIX0004765
HIT000033947
(
BC008752
)
(Zinc finger protein 622; Zinc finger-like protein 9;)
genome : 16,451,628 - 16,465,894 (14,267)
query : 1 - 1,692 (1,692/1,710)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003604 : Zinc finger, U1-type
IPR022755 : Zinc finger, double-stranded RNA binding
GO :
0003676 : Molecular Function : nucleic acid binding
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004765)
HIX0004765
HIT000211331 (
NM_033414
)
(Zinc finger protein 622; Zinc finger-like protein 9;)
genome : 16,451,628 - 16,465,894 (14,267)
query : 1 - 1,692 (1,692/1,710)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004765)
HIX0004765
HIT000034992
(
BC010545
)
(Zinc finger protein 622; Zinc finger-like protein 9;)
genome : 16,451,628 - 16,465,883 (14,256)
query : 1 - 1,681 (1,681/1,695)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003604 : Zinc finger, U1-type
IPR022755 : Zinc finger, double-stranded RNA binding
GO :
0003676 : Molecular Function : nucleic acid binding
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004765)
HIX0004765
HIT000118064 (
ENST00000308683
)
(Zinc finger protein 622; Zinc finger-like protein 9;)
genome : 16,451,628 - 16,465,901 (14,274)
query : 1 - 1,699 (1,699/1,699)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004765)
HIX0004765
HIT000083792
(
AY046059
)
Representative transcript
(Zinc finger protein 622; Zinc finger-like protein 9;)
genome : 16,451,629 - 16,465,898 (14,270)
query : 9 - 1,702 (1,694/1,702)
6 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.999)5'
coverage = 1.000
InterPro :
IPR003604 : Zinc finger, U1-type
IPR022755 : Zinc finger, double-stranded RNA binding
GO :
0003676 : Molecular Function : nucleic acid binding
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004765)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB093669
Gallus
sp. (Chicken) : AF299386
Mus
sp. (Mouse) : AK031232
Rattus
sp. (Rat) : AY321329
Danio
sp. (Zebrafish) : BC055386
Bos
sp. (Cow) : BC102394
Oryzias
sp. (Medaka) : ENSORLT00000007965
Tetraodon
sp. (Tetraodon) : GSTENT00015277001
Takifugu
sp. (Fugu) : SINFRUT00000132290
Equus
sp. (Horse) : XM_001917248
Canis
sp. (Dog) : XM_863237
Pan
sp. (Chimpanzee) : XR_025378
Monodelphis
sp. (Opossum) : XR_030376
HIX0032240
HIT000066126
(
AF075104
)
Representative transcript
(Hypothetical short protein.)
genome : 16,452,139 - 16,452,705 (567)
query : 3 - 569 (567/569)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 0.996
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, cyto_mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032240)
HIX0004766
HIT000041024
(
BC030517
)
(Protein FAM134B;)
genome : 16,473,147 - 16,478,174 (5,028)
query : 1 - 1,054 (1,054/1,139)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 16, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004766)
HIX0004766
HIT000027350
(
AL832438
)
(Protein FAM134B;)
genome : 16,473,165 - 16,616,843 (143,679)
query : 1 - 2,943 (2,943/3,037)
9 exons
identity = 0.998
3'(1.000;1.000;0.985;1.000;1.000;0.969;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004766)
HIX0004766
HIT000366231 (
NM_001034850
)
(Protein FAM134B;)
genome : 16,473,147 - 16,617,167 (144,021)
query : 1 - 3,284 (3,284/3,308)
9 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;0.969;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, E.R. 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004766)
HIX0004766
HIT000207534 (
NM_019000
)
(Protein FAM134B isoform 2.)
genome : 16,473,147 - 16,509,107 (35,961)
query : 1 - 3,160 (3,160/3,184)
7 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.969;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004766)
HIX0004766
HIT000610166 (
ENST00000510362
)
(Protein FAM134B;)
genome : 16,473,147 - 16,478,174 (5,028)
query : 1 - 1,054 (1,054/1,054)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 16, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004766)
HIX0004766
HIT000002634
(
AK000159
)
(Protein FAM134B;)
genome : 16,473,165 - 16,475,344 (2,180)
query : 6 - 2,186 (2,181/2,203)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 15, cyto 3.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004766)
HIX0004766
HIT000008194
(
AK024920
)
(Protein FAM134B isoform 2.)
genome : 16,473,165 - 16,508,937 (35,773)
query : 1 - 2,973 (2,973/2,989)
7 exons
identity = 0.998
3'(0.999;1.000;1.000;1.000;1.000;0.969;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004766)
HIX0004766
HIT000482824 (
ENST00000399793
)
(Protein FAM134B isoform 2.)
genome : 16,473,162 - 16,509,107 (35,946)
query : 1 - 3,145 (3,145/3,145)
7 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.969;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004766)
HIX0004766
HIT000117310 (
ENST00000306320
)
(Protein FAM134B;)
genome : 16,473,163 - 16,617,167 (144,005)
query : 1 - 3,268 (3,268/3,268)
9 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.969;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, E.R. 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004766)
HIX0004766
HIT000264927
(
BC073132
)
(Protein FAM134B isoform 2.)
genome : 16,474,797 - 16,508,941 (34,145)
query : 1 - 1,343 (1,343/1,367)
7 exons
identity = 0.995
3'(1.000;1.000;0.985;1.000;1.000;0.969;0.992)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004766)
HIX0004766
HIT000009082
(
AK025808
)
Representative transcript
(Protein FAM134B;)
genome : 16,474,794 - 16,617,094 (142,301)
query : 1 - 1,564 (1,564/1,581)
9 exons
identity = 0.996
3'(0.998;1.000;0.985;1.000;1.000;0.969;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR003388 : Reticulon
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004766)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB093669
Mus
sp. (Mouse) : AK015182
Rattus
sp. (Rat) : AY321329
Bos
sp. (Cow) : BC102079
Gallus
sp. (Chicken) : BX935367
Oryzias
sp. (Medaka) : ENSORLT00000007870
Takifugu
sp. (Fugu) : SINFRUT00000132292
Danio
sp. (Zebrafish) : XM_001343026
Equus
sp. (Horse) : XM_001917250
Canis
sp. (Dog) : XM_536520
Pan
sp. (Chimpanzee) : XR_025378
Monodelphis
sp. (Opossum) : XR_030376
HIX0004766
HIT000053876
(
BC053326
)
(Protein FAM134B;)
genome : 16,474,794 - 16,617,091 (142,298)
query : 1 - 1,561 (1,561/1,578)
9 exons
identity = 0.997
3'(1.000;1.000;0.985;1.000;1.000;0.969;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR003388 : Reticulon
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004766)
HIX0004766
HIT000009106
(
AK025832
)
(Protein FAM134B;)
genome : 16,474,797 - 16,475,344 (548)
query : 9 - 556 (548/574)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 0.986
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 15.5, cyto 6, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004766)
HIX0004766
HIT000384501
(
AK225371
)
(Protein FAM134B;)
genome : 16,474,797 - 16,475,344 (548)
query : 9 - 556 (548/574)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 0.986
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 15.5, cyto 6, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004766)
HIX0004766
HIT000090177
(
BC020603
)
(Protein FAM134B isoform 2.)
genome : 16,474,812 - 16,508,937 (34,126)
query : 1 - 1,326 (1,326/1,355)
7 exons
identity = 0.995
3'(1.000;1.000;1.000;0.993;1.000;0.969;0.992)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004766)
HIX0004766
HIT000609805 (
ENST00000509977
)
(Protein FAM134B isoform 2.)
genome : 16,477,771 - 16,509,545 (31,775)
query : 1 - 636 (636/640)
6 exons
identity = 0.994
3'(1.000;1.000;1.000;1.000;0.969;1.000)5'
coverage = 0.994
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, extr 2, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004766)
HIX0004766
HIT000606505 (
ENST00000506441
)
(Protein FAM134B isoform 2.)
genome : 16,483,106 - 16,508,795 (25,690)
query : 1 - 585 (585/585)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 13, extr 8, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004766)
HIX0216664
HIT000000557
(
AB020647
)
(F-box/LRR-repeat protein 7; F-box and leucine-rich repeat protein 7; F-box protein FBL6/FBL7;)
genome : 15,500,305 - 15,939,900 (439,596)
query : 1 - 4,562 (4,562/4,562)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 10, nucl 5.5, extr 5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216664)
HIX0216664
HIT000204073 (
NM_012304
)
(F-box/LRR-repeat protein 7; F-box and leucine-rich repeat protein 7; F-box protein FBL6/FBL7;)
genome : 15,500,305 - 15,939,900 (439,596)
query : 1 - 4,562 (4,562/4,562)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 10, nucl 5.5, extr 5, mito 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216664)
HIX0216664
HIT000604796 (
ENST00000504595
)
(F-box/LRR-repeat protein 7; F-box and leucine-rich repeat protein 7; F-box protein FBL6/FBL7;)
genome : 15,500,305 - 15,939,900 (439,596)
query : 1 - 4,562 (4,562/4,562)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 10, nucl 5.5, extr 5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216664)
HIX0216664
HIT000500446
(
BC136424
)
Representative transcript
(F-box/LRR-repeat protein 7; F-box and leucine-rich repeat protein 7; F-box protein FBL6/FBL7;)
genome : 15,500,540 - 15,938,076 (437,537)
query : 1 - 2,445 (2,445/2,445)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR006553 : Leucine-rich repeat, cysteine-containing subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 10, nucl 5.5, extr 5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216664)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC091646
Danio
sp. (Zebrafish) : BC128845
Oryzias
sp. (Medaka) : ENSORLT00000015897
Pongo
sp. (Orangutan) : ENSPPYT00000017847
Tetraodon
sp. (Tetraodon) : GSTENT00025532001
Takifugu
sp. (Fugu) : SINFRUT00000140108
Rattus
sp. (Rat) : XM_001064103
Macaca
sp. (Macaque) : XM_001087468
Pan
sp. (Chimpanzee) : XM_001148598
Monodelphis
sp. (Opossum) : XM_001373211
Equus
sp. (Horse) : XM_001499794
Gallus
sp. (Chicken) : XM_426048
Canis
sp. (Dog) : XM_546380
Bos
sp. (Cow) : XM_597007
HIX0216664
HIT000099228
(
BC050571
)
(Conserved hypothetical protein.)
genome : 15,937,754 - 15,939,901 (2,148)
query : 1 - 2,148 (2,148/2,227)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto_nucl 4.5, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216664)
HIX0206307
eHIT000019155 ( ESTsASS_5_1006 )
Representative transcript
(Non-protein coding transcript.)
genome : 15,885,397 - 15,902,215 (16,819)
query : 1 - 657 (657/657)
5 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0206307)
ESTs used for assembly :
CF140707,FN156254,CF122220 Ortholog candidate ( ->
Evola
)
Pan
sp. (Chimpanzee) : XM_001148670
HIX0032085
eHIT000018304 ( ESTsASS_5_155 )
(Non-protein coding transcript.)
genome : 16,067,474 - 16,179,567 (112,094)
query : 1 - 1,197 (1,197/1,197)
4 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032085)
ESTs used for assembly :
BX332938,BX332939
AC016575.7
15000001-15055786 F -
NCBI
AC016651.8
15055787-15140324 F +
NCBI
AC016648.5
15140325-15262356 F +
NCBI
AC113406.2
15262357-15309677 F -
NCBI
AC114964.2
15309678-15480534 F -
NCBI
AC010477.8
15480535-15530624 F -
NCBI
AC010638.7
15530625-15611269 F +
NCBI
AC091970.3
15611270-15780780 F -
NCBI
AC027332.4
15780781-15913927 F -
NCBI
AC091872.3
15913928-15949889 F +
NCBI
AC026807.4
15949890-16049280 F +
NCBI
AC016650.6
16049281-16141338 F -
NCBI
AC092335.2
16141339-16305453 F +
NCBI
AC020980.6
16305454-16476263 F +
NCBI
AC022113.6
16476264-16600000 F -
NCBI