bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.abelii
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
CR859567
Representative transcript
genome : 100,309,041 - 100,355,202 (46,162)
query : 3 - 4,043 (4,041/4,048)
27 exons
identity = 0.995
5'(0.989;1.000;1.000;1.000;0.990;1.000;1.000;
1.000;0.983;1.000;0.991;1.000;1.000;1.000;
1.000;1.000;0.992;1.000;1.000;0.994;0.982;
0.982;0.984;0.986;0.991;1.000;0.997)3'
coverage = 0.998
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000325484
Pan
sp. (Chimpanzee) : XM_001140931
Macaca
sp. (Macaque) : AB168361
Mus
sp. (Mouse) : AF294327
Rattus
sp. (Rat) : ENSRNOT00000014859
Canis
sp. (Dog) : XM_542647
Equus
sp. (Horse) : XM_001492682
Monodelphis
sp. (Opossum) : XM_001377082
Gallus
sp. (Chicken) : BX935446
Danio
sp. (Zebrafish) : BC142883
Oryzias
sp. (Medaka) : ENSORLT00000007714
Tetraodon
sp. (Tetraodon) : GSTENT00007135001
Takifugu
sp. (Fugu) : SINFRUT00000165332
ENSPPYT00000006469
genome : 100,309,041 - 100,355,204 (46,164)
query : 1 - 4,067 (4,067/4,067)
27 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.988;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPPYT00000006470
genome : 100,309,833 - 100,355,196 (45,364)
query : 1 - 3,946 (3,946/3,946)
26 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000325484
(
Y08890
)
genome : 100,287,103 - 100,355,789 (68,687)
query : 46 - 4,790 (4,745/4,826)
28 exons
identity = 0.983
5'(0.972;0.989;0.963;0.995;1.000;0.979;0.990;
0.992;0.992;0.989;0.981;0.992;0.978;1.000;
0.995;1.000;0.985;0.992;0.990;0.988;1.000;
1.000;1.000;0.991;0.991;0.986;0.970)3'
coverage = 0.991
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000056538
(
BX647891
)
genome : 100,328,120 - 100,333,203 (5,084)
query : 39 - 2,501 (2,463/2,519)
2 exons
identity = 0.960
5'(0.963;0.956)3'
coverage = 0.985
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000044904
(
AK125031
)
genome : 100,334,582 - 100,355,221 (20,640)
query : 1 - 3,688 (3,688/3,688)
16 exons
identity = 0.960
5'(0.879;0.978;1.000;0.995;1.000;0.985;0.992;
0.990;0.988;1.000;1.000;1.000;0.991;0.991;
0.986;0.979)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig182.8
100292121-100292625 W +
10
100292626-100292635 N
Contig182.9
100292636-100358325 W +
10
100358326-100358335 N
Contig182.10
100358336-100359339 W +
10
100359340-100359349 N
Contig182.11
100359350-100364992 W +
10
100364993-100365002 N
Contig182.12
100365003-100371733 W +
410
100371734-100372120 N