H-InvDB x AHG DB
Protein view
H-InvDB_9.0 released on May 27, 2015.
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H-Inv protein ID: HIP000078546 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
[Summery][Full]
[Protein Info][Member][Motif] 
provide location, ID and descriptions of functional motifs (InterPro)[Function] 
provide human-curated functional definition, similarity
category and related evidences;  Gene name; 
HUGO gene symbols; GO term; EC number; pathway information (KEGG)[PTM][Subcellular loc.] 
provide subcellular localization prediction by WolfPSORT, Target P, SOSUI, TMHMM and PTS1[Protein Structure][Evolutionary info.] 
provide orthologs relationships, phylogenic trees and sequence alignments[Polymorphism/repeat] 
provide polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Protein information
HIP ID HIP000078546
Length 39
Codon Adaptation Index (CAI). 0.736
Database links RefSeq NA
UniProt NA
CCDS NA
Original transcript information
Representative H-Inv transcript ID Transcript view HIT000250224
H-Inv cluster ID Locus view HIX0227010
Predicted CDS 1107..1226 ; 39[aa] ; Orientation:+3 ;
Genomic location Chromosome 21
Location 21q22.2
CDS position 40668411-40670268
Strand -
Accession number BC047058.1
CAGE tag ID NA
EST ID NA
Clone Number IMAGE cDNA clone 814975
Experimental resources NBRC: NITE Biological Resource Center NBRC      
Length of cDNA 1882[bp] (No. of exon:1)[A:528 T:696 G:361 C:297] ;
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:54014 ;
KEGG GENES KEGG GENES(54014) ;
GeneCard GeneCard NA
etc H-GOLD Human-Gene diversity Of Life-style related Diseases ;
Protein view


Coresponding transcript member (s)
No.1
H-Inv IDTranscript view HIT000098437
H-Inv cluster IDLocus view HIX0227010
Accession numberBC047058.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionHypothetical short protein.
Similarity category HelpHypothetical short protein(Category VI).
Hypothetical short protein.
Transcript feature Help NA
Genomic Location G-integra Help Chromosome21
Location21q22.2
CDS position40668365-40669369
Strand-
Gene structure1 exons
No.2
H-Inv IDTranscript view HIT000250224
H-Inv cluster IDLocus view HIX0227010
Accession numberAL109786.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionConserved hypothetical protein.
Similarity category HelpConserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Transcript feature Help NA
Genomic Location G-integra Help Chromosome21
Location21q22.2
CDS position40668411-40670268
Strand-
Gene structure1 exons

Protein function information
H-Inv protein ID HIP000078546
Representative H-Inv transcript ID Transcript view HIT000250224
H-Inv cluster ID Locus view HIX0227010
Definition Conserved hypothetical protein.
Similarity category Help Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Gene family/group H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
EC number NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
UniProt NA
CCDS NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Related H-InvDB links G-integraG-integra ; PPI viewer PPI view ; TACT TACT ;

Glycosylation
GPDB (GlycoProtDB)
GPDB
ID NA
Protein name NA
Organism NA
Length(aa) NA

Subcellular localization information
WoLF PSORT extracellular;
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Translation polymorphism (SNP) and microsatellite (STR) information

Single Nucleotide Polymorphism (SNP) and indel VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
1136..1136 T/C rs188875334 - CDS Synonymous[Tyr10Tyr]
1157..1157 C/G rs138335002 - CDS Nonsynonymous[His17Gln]
1186..1186 A/C rs13625 - CDS Nonsynonymous[Asp27Ala]
Microsatellite (Short Tandem Repeat, STR)
LocationVariationStrand
No data available
Related H-InvDB links
VaryGeneVaryGene ;