H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000018772 Accession number: AK093910 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number AK093910.1
CAGE tag ID NA
EST ID NA
Clone Number TRACH2014045
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (WNK2) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (WNK2);
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 2334[bp] (No. of exon:2)[A:471 T:726 G:563 C:574]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type trachea
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NMD predicted; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0008178
Genomic location  G-integra Help Chromosome 9
Location 9q22.31
Position 96077770- 96082848
Strand +
Possible duplicated location(s) NA
Gene structure 2 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:65268
KEGG GENES KEGG GENES(65268)
GeneCard GeneCardWNK2*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000110370
Predicted CDS 1080..1364;  94[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.673

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000018772
H-Inv cluster ID Locus viewHIX0008178
Accession number AK093910.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO;  Splicing isoformSplicing isoform
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol WNK2
HGNC aliases "serologically defined colon cancer antigen 43"
HGNC name WNK lysine deficient protein kinase 2
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000110370
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:65268
KEGG GENES KEGG GENES(65268)
GeneCard GeneCardWNK2*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular; 
Target P signal peptide
SOSUI membrane protein
TMHMM membrane protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 1557536_at; 
HG-U95 63580_at; 
HG-U95A NA
HG-U95B NA
HG-U95C 63580_at; 
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3179793;  3179794;  3179803;  3179804;  3215217; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
77 .. 77 C/T rs192147166 + 5'UTR
119 .. 119 T/C rs10761210 + 5'UTR
152 .. 152 C/T rs184283146 + 5'UTR
171 .. 171 A/G rs112438909 + 5'UTR
223 .. 223 A/G rs72743446 + 5'UTR
326 .. 326 G/A rs7860234 + 5'UTR
328 .. 328 A/G rs113519499 + 5'UTR
343 .. 343 T/C rs191496094 + 5'UTR
382 .. 382 T/G rs2617222 - 5'UTR
419 .. 419 C/A rs79581826 + 5'UTR
516 .. 516 T/C rs75075912 + 5'UTR
569 .. 569 C/T rs138096967 + 5'UTR
578 .. 578 G/A rs117571498 + 5'UTR
599 .. 599 G/A rs78835228 + 5'UTR
677 .. 677 T/G rs4744218 + 5'UTR
713 .. 713 T/G rs184353322 + 5'UTR
881 .. 881 T/G rs116945141 + 5'UTR
897 .. 897 A/T rs116634461 + 5'UTR
914 .. 914 T/C rs56228105 + 5'UTR
920 .. 920 G/A rs35993449 + 5'UTR
1021 .. 1021 T/C rs190388981 + 5'UTR
1063 ^ 1064 -/G rs141890250 + 5'UTR
1082 .. 1082 G/C rs114333343 + CDS Nonsynonymous[Met1Ile]
1091 .. 1091 G/T rs7042943 + CDS Nonsynonymous[Leu4Phe]
1110 .. 1110 A/G rs193211885 + CDS Nonsynonymous[Ile11Val]
1188 .. 1188 C/G rs185508491 + CDS Nonsynonymous[Leu37Val]
1196 .. 1196 G/A rs112757611 + CDS Synonymous[Glu39Glu]
1213 .. 1213 T/A rs145941310 + CDS Nonsynonymous[Leu45His]
1228 .. 1228 C/T rs139791882 + CDS Nonsynonymous[Ala50Val]
1250 .. 1250 G/A rs190414521 + CDS Synonymous[Pro57Pro]
1260 .. 1260 C/A rs80019840 + CDS Nonsynonymous[Pro61Thr]
1264 .. 1264 G/A rs117249515 + CDS Nonsynonymous[Arg62His]
1353 .. 1353 C/T rs141521438 + CDS Nonsynonymous[Pro92Ser]
1391 .. 1391 G/A rs146227782 + 3'UTR
1399 .. 1399 T/C rs181462740 + 3'UTR
1400 .. 1400 T/A rs148423696 + 3'UTR
1486 .. 1486 G/T rs142940946 + 3'UTR
1564 .. 1564 A/G rs140009431 + 3'UTR
1591 .. 1591 A/G rs10992704 + 3'UTR
1683 .. 1683 C/G rs4743913 + 3'UTR
1710 .. 1710 T/C rs77255879 + 3'UTR
1731 .. 1731 G/A rs4743914 + 3'UTR
1754 .. 1754 C/T rs113610779 + 3'UTR
1925 ^ 1926 -/GAG rs199785276 + 3'UTR
2028 .. 2028 C/T rs185607629 + 3'UTR
2042 .. 2042 G/C rs142929082 + 3'UTR
2056 .. 2056 C/T rs147878448 + 3'UTR
2069 .. 2069 C/T rs147707800 + 3'UTR
2101 .. 2101 G/A rs142537088 + 3'UTR
2105 .. 2105 C/T rs146916008 + 3'UTR
2121 .. 2121 C/T rs147951991 + 3'UTR
2191 .. 2191 C/T rs190783011 + 3'UTR
2194 .. 2194 C/T rs1045829 + 3'UTR
2238 .. 2238 T/G rs6479474 + 3'UTR
2263 .. 2263 A/C rs3185785 + 3'UTR
2268 .. 2268 C/T rs3185787 + 3'UTR
2285 .. 2285 A/C rs3185789 + 3'UTR
2297 .. 2297 A/C rs1045830 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
HSMAR2 1 298 -
L1M5 325 383 -
L1M5 548 1245 -
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer