H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
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InterPro name*
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RefSeq (protein) ID
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H-Invitational ID:
HIT000018772
Accession number:
AK093910
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Conserved hypothetical protein.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AK093910.1
CAGE tag ID
NA
EST ID
NA
Clone Number
TRACH2014045
Experimental resources
NBRC
;
HGPD
;
Antibody (WNK2)
;
Catalog (WNK2)
;
Sequence data provider
Project:FLJ; Provider:FLJ/HRI;
Annotation project
H-Invitational FLcDNA
Length of cDNA
2334[bp] (No. of exon:2)[A:471 T:726 G:563 C:574]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
trachea
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NMD predicted;
Notes
NA
TTTCTTTGGGGACATGGACCCTGTAAACTTTTCAGAAAGCATCAGTGATC TCACCATTCTTCCACCCAAGCTTCACCATACATGTGATGTTGGTTCTTGC TTGGCAGAATTCACGTTATTGTGATAGGGGCTCTTTTCAAACTGAAGTCT TCTCCTTCTTAGTGCCTCAGACTACCTCCTCTTCAGACATGCTGCAATAA GTTAGTACAAGTTTATTTGGGTACAAAGATTTTTTTTGAAAGTCATGCAT AGTTTTTTCATGGTATGTCTTTTCCATGAACTTTTTGAAGACCCCTTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTATATAATGGATATAGTCTACCAA TCTGTGGTTTGTGTTTTCACTTTCTTAATGGTGAACATGAGATGGTAAAA ATTTTAATTTTTTTTTTCCTAAAAGCTTTGCAGCTTTAGCTATTGCTTTA GATCCCATGAGCCATCTCAAATGAACTCTTGAGTATATTTTGATGCAGAG GTAAATCTGTTTTTTTCCTCTCTGCATATCTGATCGTTCCAGCCCCTTCC TCTCCATATTGAATTGCACTGAATTGAGCAGACATTCGTCAAGTGGTCGT CTGTGTGTAGGTCCATTTCTGAATTTGCTATTTTGTTTGCTTTAGCAATT CCCTTATCATTGTGGCAACACCACACTCTCTTCATGACTGAAGTTTTCTA GGAAGTTTAATCTTTGCTCAGGAAAGACTTTCAGTGTTGATCTTCTTCAA GAAGTTCTTGATTTTTTTCAGGTCGTTAATATTTCCATATGTTTTAGGAA CAGCCTGTCACTTTCTGCAGGCTAGCCCACTGGGATTTCGGCTGGGAGTG GATTCAGTCTGTTGATTATCTGGGTGAGGTTTGACATATGAACAACATGA GCGTTCCTGTGAATGTAGTGTCCGTTTACTGGCATCTTTTTTGTTTCTCT GCAGTGTAAAGATGTTATACCTCTTTCATTAAATTTATCCCTAGGTAGCT GATGTTTTGGAATGCTATTATAAATGTTATTTTTCTTTAAATCTCCTTTT CCAGCTTCCTGTTGCTAGAATATAAAACTATGGTTGACTTGCGTACCCCA TATCCTGCAATTGTGCTAAATTTGCTATTAGTTCTAGAAATTGGTTTGTC CATTCTTGTGGGTTTTCTGCATACACAGTCTTGTCATCTGCATGAGGCCA GTTCTCCTTCTCTCTGTCCAGTCTGTGCGGTTGACTCCTTTTCCTCCCCG CCTGGAGATCCCCGTGGTGTCGACTGGAAGCATGGAGGCACCTTGGGGAG GTATTGGGCATTTTGTCGTGGGCAGGGGCTCAGCTGTCGGTTCCATAGAG GACCTTCCAGATAAGGAGGCCCCTCCAGCCCCTGACTGCCGAGCTTGATT TCCAGGAAGGGTTGTGGAAGTCACCGAGTGCCCTCCATGCACCTGTGAAG AGTGCCCAGTGGGGCCCTCCCTGGAGTGGAGAGGAGTGACTCCCCGTGGC CAGCAGCCTTGCCTTCCTGGGGCACACCCCGCATACAGCTTCTCCCCGGG CTGGGACAGTGGAAGGGCTGCCTTGCCATCACCTCCCTGCACACTTGCTT TGCCCAGGTCCTGGGGCTCTGCTCCTGCCAGCTCCTGGGTGGTTCATGCT CCTGTGAGGGCACTGACCAGCCAAGCAGGAGGCCTTTGTGGTGGCTGAGT AGAGGCATGTGGGGTCACTCATGCGCCCTCGGGGTCCAGGCCCCACTAGT CCTCCTCCAAGTCCCATTTTGGCTGGTGGACACCCAGGTGTGTGGCCTAG AGGCTATCAGGCTGCAGCTTGGGGAAGCAAACAAGGGAGGGTGATGGTTC CTGGCCCCACACCATCATTCTGGTGTCAGCCCTGAGAGGGTGCCTGTCAC AGCAGGTTCCAGGACTGCTGCCTCCTGAGGATGGAGAAACTGTGGCACCC TGGGGGCCACTAAGGGAGGCCAGCTGATTGCAGCCACGTGTACCTTCCTC TTCTCGTCTCTGTGTTTTGTAGATGACCGCACCTCGAGCAGGAGTGGGGA TGCCACGTCTGCCCCCAGCGCCCGGCCCTCTGTCCACCACGGTCATCCCC GGAGCCGCCCCGACCCTGTCCGTGCCCACACCAGATCCTGAGAGTGAGAA GCCTGACTGACCCCGCCTAGACGCCAGGCCCACTTCACGCCGTCTAAGTG GAGAAGTGACGGACCCTCAGGGCCAGCTGCTCCTCCTTTCCAGTTCACGC TGTTTTGTAACCACTTTCTAAGCATTTTTTATTCACAATTGGAAACACAA ATGTAATGCAAGAATAAAAAATATTTTGGGGCAG
Gene structure information
H-Inv cluster ID
HIX0008178
Genomic location
Chromosome
9
Location
9q22.31
Position
96077770- 96082848
Strand
+
Possible duplicated location(s)
NA
Gene structure
2 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:65268
;
KEGG GENES
KEGG GENES(65268)
;
GeneCard
WNK2
;
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000110370
Predicted CDS
1080..1364; 94[aa]; Orientation:+3;
Codon Adaptation Index (CAI).
0.673
MVDLRTPYPAIVLNLLLVLEIGLSILVGFLHTQSCHLHEASSPSLCPVCA VDSFSSPPGDPRGVDWKHGGTLGRYWAFCRGQGLSCRFHRGPSR*
Gene function information
H-Inv ID
HIT000018772
H-Inv cluster ID
HIX0008178
Accession number
AK093910.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Splicing isoform
Coding potential
Protein coding;
Definition
Conserved hypothetical protein.
Similarity category
Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence
NA
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
WNK2
HGNC aliases
"serologically defined colon cancer antigen 43"
HGNC name
WNK lysine deficient protein kinase 2
DDBJ
NA
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000110370
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:65268
;
KEGG GENES
KEGG GENES(65268)
;
GeneCard
WNK2
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
extracellular;
Target P
signal peptide
SOSUI
membrane protein
TMHMM
membrane protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
NA
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
NA
HG-U133A
NA
HG-U133A_2
NA
HG-U133B
NA
HG-U133_Plus_2
1557536_at;
HG-U95
63580_at;
HG-U95A
NA
HG-U95B
NA
HG-U95C
63580_at;
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
3179793; 3179794; 3179803; 3179804; 3215217;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
NA
Whole Human Genome Oligo Microarray:PGID247
NA
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
77 .. 77
C/T
rs192147166
+
5'UTR
119 .. 119
T/C
rs10761210
+
5'UTR
152 .. 152
C/T
rs184283146
+
5'UTR
171 .. 171
A/G
rs112438909
+
5'UTR
223 .. 223
A/G
rs72743446
+
5'UTR
326 .. 326
G/A
rs7860234
+
5'UTR
328 .. 328
A/G
rs113519499
+
5'UTR
343 .. 343
T/C
rs191496094
+
5'UTR
382 .. 382
T/G
rs2617222
-
5'UTR
419 .. 419
C/A
rs79581826
+
5'UTR
516 .. 516
T/C
rs75075912
+
5'UTR
569 .. 569
C/T
rs138096967
+
5'UTR
578 .. 578
G/A
rs117571498
+
5'UTR
599 .. 599
G/A
rs78835228
+
5'UTR
677 .. 677
T/G
rs4744218
+
5'UTR
713 .. 713
T/G
rs184353322
+
5'UTR
881 .. 881
T/G
rs116945141
+
5'UTR
897 .. 897
A/T
rs116634461
+
5'UTR
914 .. 914
T/C
rs56228105
+
5'UTR
920 .. 920
G/A
rs35993449
+
5'UTR
1021 .. 1021
T/C
rs190388981
+
5'UTR
1063 ^ 1064
-/G
rs141890250
+
5'UTR
1082 .. 1082
G/C
rs114333343
+
CDS
Nonsynonymous[Met1Ile]
1091 .. 1091
G/T
rs7042943
+
CDS
Nonsynonymous[Leu4Phe]
1110 .. 1110
A/G
rs193211885
+
CDS
Nonsynonymous[Ile11Val]
1188 .. 1188
C/G
rs185508491
+
CDS
Nonsynonymous[Leu37Val]
1196 .. 1196
G/A
rs112757611
+
CDS
Synonymous[Glu39Glu]
1213 .. 1213
T/A
rs145941310
+
CDS
Nonsynonymous[Leu45His]
1228 .. 1228
C/T
rs139791882
+
CDS
Nonsynonymous[Ala50Val]
1250 .. 1250
G/A
rs190414521
+
CDS
Synonymous[Pro57Pro]
1260 .. 1260
C/A
rs80019840
+
CDS
Nonsynonymous[Pro61Thr]
1264 .. 1264
G/A
rs117249515
+
CDS
Nonsynonymous[Arg62His]
1353 .. 1353
C/T
rs141521438
+
CDS
Nonsynonymous[Pro92Ser]
1391 .. 1391
G/A
rs146227782
+
3'UTR
1399 .. 1399
T/C
rs181462740
+
3'UTR
1400 .. 1400
T/A
rs148423696
+
3'UTR
1486 .. 1486
G/T
rs142940946
+
3'UTR
1564 .. 1564
A/G
rs140009431
+
3'UTR
1591 .. 1591
A/G
rs10992704
+
3'UTR
1683 .. 1683
C/G
rs4743913
+
3'UTR
1710 .. 1710
T/C
rs77255879
+
3'UTR
1731 .. 1731
G/A
rs4743914
+
3'UTR
1754 .. 1754
C/T
rs113610779
+
3'UTR
1925 ^ 1926
-/GAG
rs199785276
+
3'UTR
2028 .. 2028
C/T
rs185607629
+
3'UTR
2042 .. 2042
G/C
rs142929082
+
3'UTR
2056 .. 2056
C/T
rs147878448
+
3'UTR
2069 .. 2069
C/T
rs147707800
+
3'UTR
2101 .. 2101
G/A
rs142537088
+
3'UTR
2105 .. 2105
C/T
rs146916008
+
3'UTR
2121 .. 2121
C/T
rs147951991
+
3'UTR
2191 .. 2191
C/T
rs190783011
+
3'UTR
2194 .. 2194
C/T
rs1045829
+
3'UTR
2238 .. 2238
T/G
rs6479474
+
3'UTR
2263 .. 2263
A/C
rs3185785
+
3'UTR
2268 .. 2268
C/T
rs3185787
+
3'UTR
2285 .. 2285
A/C
rs3185789
+
3'UTR
2297 .. 2297
A/C
rs1045830
+
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
HSMAR2
1
298
-
L1M5
325
383
-
L1M5
548
1245
-
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;