H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000046831 Accession number: AK126958 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number AK126958.1
CAGE tag ID NA
EST ID NA
Clone Number BRAWH3013049
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 3771[bp] (No. of exon:4)[A:1037 T:1188 G:747 C:799]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type brain
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NMD predicted; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0002336
Genomic location  G-integra Help Chromosome 2
Location 2q12.1
Position 105049725- 105137290
Strand +
Possible duplicated location(s) NA
Gene structure 4 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:150568; 
KEGG GENES KEGG GENES(150568); 
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA-genome alignmentcDNA-genome alignment; 

Predicted CDS information
HIP ID HIP000089044
Predicted CDS 2662..2856;  64[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.775

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000046831
H-Inv cluster ID Locus viewHIX0002336
Accession number AK126958.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
 Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000089044
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:150568; 
KEGG GENES KEGG GENES(150568); 
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT; 
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  nuclear;  cytosol; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator		 AceGene NA
Affymetrix
GeneChip		 HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 NA
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2497654;  2497659;  2497660;  2497661;  2497670;  2497671;  2497672;  2497673;  2568326;  2568352;  2568353;  2568356;  2568358;  3717314; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator; 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
145 .. 145 C/A rs62149680 + 5'UTR
167 .. 167 T/G rs6750708 + 5'UTR
197 .. 197 T/C rs12162407 + 5'UTR
246 .. 246 T/C rs186030293 + 5'UTR
279 .. 279 G/A rs149690376 + 5'UTR
297 .. 297 C/G rs188882931 + 5'UTR
505 .. 505 T/C rs1519633 + 5'UTR
517 .. 517 T/C rs1519634 + 5'UTR
519 .. 519 T/G rs181974418 + 5'UTR
536 .. 536 A/T rs186358224 + 5'UTR
573 .. 573 G/A rs192145711 + 5'UTR
637 .. 637 T/G rs79047296 + 5'UTR
741 .. 741 T/G rs149449057 + 5'UTR
794 .. 794 A/C rs143039420 + 5'UTR
809 .. 809 C/G rs55864239 + 5'UTR
915 .. 915 A/C rs148208172 + 5'UTR
1045 .. 1045 C/G rs78607502 + 5'UTR
1163 .. 1163 G/A rs182606449 + 5'UTR
1306 .. 1306 G/T rs59518628 + 5'UTR
1411 .. 1411 A/G rs145710315 + 5'UTR
1471 .. 1471 G/C rs186068278 + 5'UTR
1481 .. 1481 A/G rs77291749 + 5'UTR
1488 .. 1488 G/A rs147239397 + 5'UTR
1559 .. 1559 C/T rs140679040 + 5'UTR
1602 .. 1602 G/T rs112474527 + 5'UTR
1696 .. 1696 G/A rs7583889 + 5'UTR
1863 .. 1863 T/G rs77102204 + 5'UTR
1954 .. 1954 C/T rs149717439 + 5'UTR
1956 .. 1956 A/T rs13402409 + 5'UTR
2097 .. 2097 C/T rs113625240 + 5'UTR
2098 .. 2098 G/A rs191128853 + 5'UTR
2107 .. 2107 T/A rs180747139 + 5'UTR
2137 .. 2137 C/A rs148897680 + 5'UTR
2142 .. 2142 C/T rs61213833 + 5'UTR
2143 ^ 2144 -/G rs34675891 + 5'UTR
2436 .. 2436 C/T rs145599498 + 5'UTR
2525 .. 2525 T/G rs186606380 + 5'UTR
2673 .. 2673 G/A rs190064711 + CDS Synonymous[Ala4Ala]
2678 .. 2678 G/A rs138138986 + CDS Nonsynonymous[Gly6Glu]
2755 .. 2755 G/A rs76581053 + CDS Nonsynonymous[Gly32Ser]
2759 .. 2759 T/A rs3762500 + CDS Nonsynonymous[Leu33Gln]
2762 .. 2762 G/A rs183191102 + CDS Nonsynonymous[Ser34Asn]
2772 .. 2772 C/T rs187480049 + CDS Synonymous[Pro37Pro]
2802 .. 2802 G/A rs114643228 + CDS Synonymous[Val47Val]
2851 .. 2851 G/A rs74321923 + CDS Nonsynonymous[Val64Met]
2890 .. 2890 T/A rs181022474 + 3'UTR
2922 .. 2922 T/G rs11885382 + 3'UTR
3006 .. 3006 A/G rs77396095 + 3'UTR
3062 .. 3062 G/A rs143234682 + 3'UTR
3075 .. 3075 A/G rs185051388 + 3'UTR
3089 .. 3089 G/A rs191550727 + 3'UTR
3097 .. 3097 C/T rs73946473 + 3'UTR
3118 .. 3118 G/A rs75991058 + 3'UTR
3289 .. 3289 G/A rs142916750 + 3'UTR
3419 .. 3419 C/T rs151101585 + 3'UTR
3487 .. 3487 T/C rs141085803 + 3'UTR
3613 .. 3613 C/T rs186374115 + 3'UTR
3619 .. 3619 T/G rs116087331 + 3'UTR
3622 .. 3622 C/T rs145180318 + 3'UTR
3623 .. 3623 G/A rs35295399 + 3'UTR
3636 .. 3636 T/C rs115505403 + 3'UTR
3666 .. 3666 A/T rs191237620 + 3'UTR
3675 .. 3675 A/G rs139024660 + 3'UTR
3682 .. 3682 G/C rs183196370 + 3'UTR
3731 .. 3731 T/C rs186053164 + 3'UTR
3755 .. 3755 A/G rs56243127 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MIRb 1618 1682 -
AluSx1 1843 2150 -
MIRb 2221 2321 -
MIR 2517 2732 -
LFSINE_Vert 3291 3426 -
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD); 
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer;