H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000056538 Accession number: BX647891 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number BX647891.1
CAGE tag ID NA
EST ID NA
Clone Number DKFZp686P14102
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider Provider:DKFZ/MIPS
Annotation project H-Invitational FLcDNA
Length of cDNA 2518[bp] (No. of exon:2)[A:692 T:751 G:505 C:570]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type human fetal kidney
Develpmental stage fetal
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA Site: 19(-)
Vector/adapter sequence NA
Frame shift 2101-2101[bp] Insertion(T);
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature Reverse orientation revised; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0026617
Genomic location  G-integra Help Chromosome 13
Location 13q32.2
Position 98647466- 98652539
Strand -
Possible duplicated location(s) NA
Gene structure 2 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000441908
Predicted CDS 2..241;  79[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.707

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000056538
H-Inv cluster ID Locus viewHIX0026617
Accession number BX647891.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000441908
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  nuclear;  cytosol;  mitochondria; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 NA
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3497863;  3497864; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
19 .. 19 T/- rs111826649 - CDS
19 .. 19 T/G rs74625853 - CDS Nonsynonymous[Phe6Leu]
20 .. 20 G/T rs75065502 - CDS AA-STOP[Glu7*]
55 .. 55 G/A rs185848159 - CDS Synonymous[Ala18Ala]
77 .. 77 C/G rs12871073 - CDS Nonsynonymous[Leu26Val]
80 .. 80 C/T rs112958679 - CDS AA-STOP[Gln27*]
160 .. 160 C/A rs113369072 - CDS Synonymous[Arg53Arg]
205 .. 205 C/T rs7997339 - CDS Synonymous[His68His]
206 .. 206 G/A rs190739101 - CDS Nonsynonymous[Val69Ile]
216 .. 216 A/G rs12871757 - CDS Nonsynonymous[Asp72Gly]
223 .. 223 T/C rs142170049 - CDS Synonymous[Leu74Leu]
245 .. 245 G/A rs66700887 - 3'UTR
255 .. 255 G/A rs186632966 - 3'UTR
268 .. 268 C/T rs12867168 - 3'UTR
319 .. 319 G/C rs147614063 - 3'UTR
330 .. 330 C/T rs144762420 - 3'UTR
379 .. 379 A/G rs182435691 - 3'UTR
380 .. 380 C/T rs149159228 - 3'UTR
440 .. 440 T/G rs145232650 - 3'UTR
465 .. 465 T/C rs115221470 - 3'UTR
775 .. 775 T/C rs190209474 - 3'UTR
849 .. 849 T/A rs72651172 - 3'UTR
881 .. 881 C/T rs139232561 - 3'UTR
923 .. 923 C/T rs12866170 - 3'UTR
934 .. 934 T/G rs115118960 - 3'UTR
935 .. 935 G/A rs146395145 - 3'UTR
1023 .. 1023 T/C rs12865615 - 3'UTR
1084 .. 1084 T/C rs143900316 - 3'UTR
1172 .. 1172 C/T rs185685682 - 3'UTR
1634 .. 1634 C/G rs143685902 - 3'UTR
1652 .. 1652 T/C rs115285820 - 3'UTR
1713 .. 1713 T/C rs73556546 - 3'UTR
1744 .. 1744 C/A rs146785169 - 3'UTR
1875 .. 1875 G/A rs143938596 - 3'UTR
1898 .. 1898 G/A rs140169419 - 3'UTR
1958 .. 1958 T/C rs775610 + 3'UTR
2005 .. 2005 C/T rs3858773 + 3'UTR
2043 .. 2043 C/T rs188242836 - 3'UTR
2140 .. 2140 C/T rs517676 + 3'UTR
2208 .. 2208 C/T rs150745615 - 3'UTR
2210 .. 2210 C/T rs141201985 - 3'UTR
2230 .. 2230 T/C rs140338509 - 3'UTR
2295 .. 2295 T/C rs117295830 - 3'UTR
2345 .. 2345 T/C rs147135999 - 3'UTR
2451 .. 2451 A/G rs7337834 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
Location Variation Strand
1911..1934 (att)8 +
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
AluY 1 301 -
AluYh9 1148 1215 -
AluJb 1343 1599 +
L1MC 1623 1703 -
AluY 1933 2219 -
L1PB1 2277 2481 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer