H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
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InterPro name*
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OMIM title*
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Pathway name*
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RefSeq (protein) ID
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H-Invitational ID:
HIT000079085
Accession number:
AF401035
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Conserved hypothetical protein.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AF401035.1
CAGE tag ID
NA
EST ID
NA
Clone Number
NA
Experimental resources
NBRC
;
HGPD
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
1182[bp] (No. of exon:3)[A:368 T:320 G:218 C:276]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
NA
Develpmental stage
NA
Sequence quality information
CDS feature
N-truncated
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
TTTGGGAGGCTGAGGCAGGCAGATCACCTAAGGCCAGGAATTCGACACCA GCCTGGCCAACGTGGCAAAACCCGTCTCTACTAAAAATACAAAAATTAGC CGGGCGTGGTGGTGTGCGCCTGGAATCCCAGCTACCCAGGAGGCTGAGGC AGGAGAAATGCTGGAACCCGGGAGGCAGAGGCTGCAGTGAGCTGAGATCA TGCCACTACTGCACTCCAGCCTGGGTGACACAGCAAGACTCCCTCTAAAA AAAGAAAAAAAGAAAAGAAAAGAAAAGAAAATGATATATCCATGATGAAT TAAAATGGAGTGGAACCCACTGATGGGAAAGCCACAGAAGGTACCAGTTA TCCACTCACTGACTTAGGTGCCTCCACTAGAATTCTCAGCACGTTTTTGC AGAACCTGGGCAACAAGAGCGAAACCCCATCTCAAAACCACAACAACAAC AACAGGACAACAGAGATGGACGACGGATCGGGAAAGCCAACCAGACAGCG TGAGGCCAGGACGGAAAGAGGCACAGGGAGCTCTGCTCAGTGTCGCTACA GGGGATCTCTCAGGCTCACAACGGGCCACTCCTCTAGGGAAGTTCTGGTC TCATCATGATCCTTGTTTGGTCTCACTCCCCATGTCCTTCTCTGTCCCTC CTCCAACTGCCATTTATTTATTTAACTGAAAAAGTACCAATCACCCACAT AGGCATGACATACTCATCCATGTACCCATTTCTTAAAATTGATCATTGTT AACATTTGGTGTAATTTGCTTTATTTATTTTTAATGAAATAAATAAAACT TTACAGAAAATGCTTTATTTTTCTCTTTGTTCCCTCCCCATCCTATATTT TTCTCCTAAAAAACCCTATTATCAGAAATATTAGTGTGTATTCCCAGTTT CGACTTTTTATTTTATTACACACACACTCCCACACATAGCTGTGACAATG AACTTCACATAGTATGGTTCTGTATTTTCTCTTTGTTTTTCAAACTTACA TAAGTATTTTACTATTTCTCATGGAAAAACTCACTTTTCCCATCCAACGT TATGTTTCCTTAAGATCTCTCTATGTTGATATAAAGAAATCTAGCTCATT CTTTTTAATGAAAATAAAGTATATTTTATGAATGTAACTCATGCTAACCA TGGCAATAAAAGCTCCATCAAGCATGCATTTA
Gene structure information
H-Inv cluster ID
HIX0040872
Genomic location
Chromosome
21
Location
21q22.2
Position
41755011- 41757283
Strand
+
Possible duplicated location(s)
NA
Gene structure
3 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:100506492
;
KEGG GENES
KEGG GENES(100506492)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000335906
Predicted CDS
368..679; 103[aa]; Orientation:+2;
Codon Adaptation Index (CAI).
0.72
VPPLEFSARFCRTWATRAKPHLKTTTTTTGQQRWTTDRESQPDSVRPGRK EAQGALLSVATGDLSGSQRATPLGKFWSHHDPCLVSLPMSFSVPPPTAIY LFN*
Gene function information
H-Inv ID
HIT000079085
H-Inv cluster ID
HIX0040872
Accession number
AF401035.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Splicing isoform
Coding potential
Protein coding;
Definition
Conserved hypothetical protein.
Similarity category
Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence
NA
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
NA
HGNC aliases
NA
HGNC name
NA
DDBJ
NA
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000335906
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:100506492
;
KEGG GENES
KEGG GENES(100506492)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
mitochondria; cytosol; extracellular; Other;
Target P
Not predicted
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
NA
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
NA
HG-U133A
NA
HG-U133A_2
NA
HG-U133B
NA
HG-U133_Plus_2
1562821_a_at;
HG-U95
NA
HG-U95A
NA
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
3260890; 3921725; 3921728; 3921731; 3921732; 3921733; 3921734;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
NA
Whole Human Genome Oligo Microarray:PGID247
A_32_P198445;
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
61 .. 61
C/T
rs142116786
+
5'UTR
221 .. 221
C/A
rs2017995
+
5'UTR
355 .. 355
C/G
rs189290433
+
5'UTR
376 .. 376
A/C
rs79923220
+
CDS
Synonymous[Pro3Pro]
392 .. 392
C/G
rs2837597
+
CDS
Nonsynonymous[Arg9Gly]
435 .. 435
A/G
rs145235038
+
CDS
Nonsynonymous[Lys23Arg]
446 .. 446
A/G
rs4818128
+
CDS
Nonsynonymous[Thr27Ala]
455 ^ 456
-/G
rs35937134
+
CDS
471 .. 471
C/T
rs142050548
+
CDS
Nonsynonymous[Thr35Met]
602 .. 602
C/T
rs7275762
+
CDS
Nonsynonymous[His79Tyr]
624 .. 624
C/T
rs188875953
+
CDS
Nonsynonymous[Ser86Leu]
658 .. 658
T/G
rs181364683
+
CDS
Synonymous[Thr97Thr]
726 .. 726
C/T
rs186525661
+
3'UTR
797 .. 797
A/G
rs7275929
+
3'UTR
800 .. 800
T/G
rs62223831
+
3'UTR
898 ^ 899
-/T
rs72104295
+
3'UTR
902 .. 902
G/A
rs190931174
+
3'UTR
1025 .. 1025
A/G
rs144273547
+
3'UTR
1043 .. 1043
T/C
rs151169539
+
3'UTR
1080 .. 1080
T/G
rs7281126
+
3'UTR
1095 .. 1095
C/T
rs2837599
+
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
AluSx
1
276
+
L1ME3Cz
715
1136
-
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene;
Repeat Mask Viewer
;