H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000079085 Accession number: AF401035 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number AF401035.1
CAGE tag ID NA
EST ID NA
Clone Number NA
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 1182[bp] (No. of exon:3)[A:368 T:320 G:218 C:276]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0040872
Genomic location  G-integra Help Chromosome 21
Location 21q22.2
Position 41755011- 41757283
Strand +
Possible duplicated location(s) NA
Gene structure 3 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:100506492
KEGG GENES KEGG GENES(100506492)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000335906
Predicted CDS 368..679;  103[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.72

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000079085
H-Inv cluster ID Locus viewHIX0040872
Accession number AF401035.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO;  Splicing isoformSplicing isoform
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000335906
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:100506492
KEGG GENES KEGG GENES(100506492)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT mitochondria;  cytosol;  extracellular;  Other; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 1562821_a_at; 
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3260890;  3921725;  3921728;  3921731;  3921732;  3921733;  3921734; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_32_P198445; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
61 .. 61 C/T rs142116786 + 5'UTR
221 .. 221 C/A rs2017995 + 5'UTR
355 .. 355 C/G rs189290433 + 5'UTR
376 .. 376 A/C rs79923220 + CDS Synonymous[Pro3Pro]
392 .. 392 C/G rs2837597 + CDS Nonsynonymous[Arg9Gly]
435 .. 435 A/G rs145235038 + CDS Nonsynonymous[Lys23Arg]
446 .. 446 A/G rs4818128 + CDS Nonsynonymous[Thr27Ala]
455 ^ 456 -/G rs35937134 + CDS
471 .. 471 C/T rs142050548 + CDS Nonsynonymous[Thr35Met]
602 .. 602 C/T rs7275762 + CDS Nonsynonymous[His79Tyr]
624 .. 624 C/T rs188875953 + CDS Nonsynonymous[Ser86Leu]
658 .. 658 T/G rs181364683 + CDS Synonymous[Thr97Thr]
726 .. 726 C/T rs186525661 + 3'UTR
797 .. 797 A/G rs7275929 + 3'UTR
800 .. 800 T/G rs62223831 + 3'UTR
898 ^ 899 -/T rs72104295 + 3'UTR
902 .. 902 G/A rs190931174 + 3'UTR
1025 .. 1025 A/G rs144273547 + 3'UTR
1043 .. 1043 T/C rs151169539 + 3'UTR
1080 .. 1080 T/G rs7281126 + 3'UTR
1095 .. 1095 C/T rs2837599 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
AluSx 1 276 +
L1ME3Cz 715 1136 -
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer