H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000098437 Accession number: BC047058 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Hypothetical short protein.
 
 

Transcript original information
Accession number BC047058.1
CAGE tag ID NA
EST ID NA
Clone Number IMAGE:5287569
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 1054[bp] (No. of exon:1)[A:332 T:350 G:210 C:162]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type Brain, hypothalamus
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 1004(+) Signal: 984-988(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0227010
Genomic location  G-integra Help Chromosome 21
Location 21q22.2
Position 40668365- 40669369
Strand -
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:54014
KEGG GENES KEGG GENES(54014)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000078546
Predicted CDS 208..327;  39[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.736

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000098437
H-Inv cluster ID Locus viewHIX0227010
Accession number BC047058.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000078546
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:54014
KEGG GENES KEGG GENES(54014)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  nuclear;  cytosol;  Other; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 225446_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 225446_at; 
HG-U133_Plus_2 225446_at; 
HG-U95 48900_at; 
HG-U95A NA
HG-U95B NA
HG-U95C 48900_at; 
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3921349;  3932235;  3932236;  3932237; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_24_P861009; 
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
61 .. 61 G/A rs149227177 - 5'UTR
65 .. 65 A/G rs2142117 - 5'UTR
74 .. 74 G/C rs113610690 - 5'UTR
237 .. 237 T/C rs188875334 - CDS Synonymous[Tyr10Tyr]
258 .. 258 C/G rs138335002 - CDS Nonsynonymous[His17Gln]
287 .. 287 A/C rs13625 - CDS Nonsynonymous[Asp27Ala]
374 .. 374 C/G rs184515150 - 3'UTR
401 .. 401 C/T rs77471089 - 3'UTR
531 .. 531 A/G rs192641648 - 3'UTR
560 .. 560 T/G rs187842194 - 3'UTR
677 ^ 678 -/C rs72088586 - 3'UTR
704 .. 704 T/C rs149646161 - 3'UTR
707 .. 707 A/C rs201645430 - 3'UTR
743 .. 743 G/- rs68116979 - 3'UTR
801 .. 801 G/- rs66519964 - 3'UTR
912 .. 912 C/T rs11552899 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MIRc 667 883 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer