H-InvDB_9.0 released on May 27, 2015.
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Keyword
H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
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InterPro name*
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OMIM title*
Pathway ID
Pathway name*
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RefSeq (protein) ID
SCOP ID
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H-Invitational ID:
HIT000242067
Accession number:
AB080592
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Similar to Bromodomain and WD repeat-containing protein 1; WD repeat-containing protein 9;
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AB080592.1
CAGE tag ID
NA
EST ID
NA
Clone Number
NA
Experimental resources
NBRC
;
HGPD
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
1682[bp] (No. of exon:15)[A:525 T:461 G:405 C:291]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
liver
Develpmental stage
NA
Sequence quality information
CDS feature
N-truncated
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
TAGGAG;
Transcript quality feature
Truncation;
Notes
NA
GGTTTCCACTGGTGCTGATGGGACAGTTTGCTTTTGGCAATGGGATTTAG AATCCTTAAAATTTAGCCCACGTCCCCTGAAGTTCACTGAAAAGCCTAGG CCAGGCGTTCAAATGCTTTGTTCTTCTTTTAGTGTTGGTGGTATGTTTTT AGCCACAGGTAGTACTGATCATGTAATCAGAATGTATTTTTTGGGTTTTG AAGCACCCGAAAAAATCGCAGAACTTGAAGGCCACACTGATAAAGTAGAT AGTATCCAATTTTGTAACAATGGTGATCGGTTCCTAAGTGGTAGCAGAGA TGGAACAGCACGGATTTGGAGATTTGAGCAGTTAGAATGGAGGAGCATTT TATTGGATATGGCTACCAGAATCTCAGGGGACTTATCTTCCGAAGAGGAA AGGTTTATGAAACCTAAAGTAACAATGATAGCTTGGAATCAAAATGATAG CATTGTTGTCACAGCTGTGAATGATCATGTCCTCAAAGTGTGGAATTCTT ACACTGGACAACTGCTTCATAACTTAATGGGACATGCTGATGAAGTATTT GTTCTGGAGACACATCCCTTTGATTCCAGAATTATGTTATCTGCAGGACA TGATGGCAGCATATTTATATGGGATATTACAAAAGGTACCAAGATGAAAC ATTATTTTAATATGATTGAAGGACAAGGACATGGAGCTGTGTTTGACTAT TCCTGATCAGATGTTCTTCCATACTGACTATCGACCACTTATTAGAGATT CTAATAATTATGTCTTAGATGAGCAAACTCAGCAGGCTCCTCATCTTATG CCTCCACCATTCTTGGTAGATGTAGATGGAAATCCTCATCCAACCAAGTA TCAGAGATTAGTACCAGGCCGAGAAAATTCTGCAGATGAACATTTGATTC CACAGCTGGGCTATGTGGCAACAAGTGATGGAGAGGTGATTGAACAAATT ATAAGCCTGCAAACCAATGATAATGATGAACGCAGCCCAGAATCGAGTAT TCTTGATGGAATGATAAGACAGTTGCAGCAGCAGCAAGATCAGAGAATGG GAGCAGATCAGGATACTATTCCAAGAGGACTTTCAAATGGTGAAGAAACA CCCCGGAGAGGTTTTAGAAGGCTGAGCTTAGACATTCAGTCCCCTCCAAA TATTGGTCTGCGTCGTAGTGGACAAGTTGAAGGTGTTCGTCAGATGCATC AAAACGCTCCACGCAGTCAGATTGCTACAGAACGTGACCTGCAGGCTTGG AAACGAAGAGTGGTTGTACCAGAGGTACCACTAGGCATATTTAGGAAGCT GGAAGACTTCCGATTAGAGAAAGGTGAAGAGGAAAGAAATCTTTATATAA TAGGAAGAAAAAGAAAGACTCTTCAGCTCTCACATAAGTCGGATTCAGTG GTTTTGGTATCACAGTCTAGACAAAGGACATGTAGGCGTAAATATCCAAA TTATGGTAGAAGAAATCGTAGCTGGCGTGAGTTATCTTCTGGAAATGAGT CTTCAAGCTCTGTAAGACATGAGACTTCCTGTGATCAGAGTGAAGGTTCT GGTTCTTCAGAAGAGGATGAATGGAGAAGTGACAGAAAAAGTGAGAGTTA CAGCGAAAGTTCAAGTGACTCTTCATCTAGATATTCCGATTGGACAGCTG ATGCGGGCATCAATTTGCAGCCTCCTTTAAGA
Gene structure information
H-Inv cluster ID
HIX0016115
Genomic location
Chromosome
21
Location
21q22.2
Position
40608644- 40652139
Strand
-
Possible duplicated location(s)
NA
Gene structure
15 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:54014
;
KEGG GENES
KEGG GENES(54014)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000132883
Predicted CDS
2..706; 234[aa]; Orientation:+2;
Codon Adaptation Index (CAI).
0.701
VSTGADGTVCFWQWDLESLKFSPRPLKFTEKPRPGVQMLCSSFSVGGMFL ATGSTDHVIRMYFLGFEAPEKIAELEGHTDKVDSIQFCNNGDRFLSGSRD GTARIWRFEQLEWRSILLDMATRISGDLSSEEERFMKPKVTMIAWNQNDS IVVTAVNDHVLKVWNSYTGQLLHNLMGHADEVFVLETHPFDSRIMLSAGH DGSIFIWDITKGTKMKHYFNMIEGQGHGAVFDYS*
Motif information
a.a.
length
InterPro
Name
217
IPR017986
WD40-repeat-containing domain [Domain]
219
IPR015943
WD40/YVTN repeat-like-containing domain [Domain]
44
IPR001680
WD40 repeat [Repeat]
42
IPR001680
WD40 repeat [Repeat]
40
IPR001680
WD40 repeat [Repeat]
37
IPR001680
WD40 repeat [Repeat]
35
IPR001680
WD40 repeat [Repeat]
15
IPR020472
G-protein beta WD-40 repeat [Repeat]
36
IPR001680
WD40 repeat [Repeat]
26
IPR001680
WD40 repeat [Repeat]
35
IPR001680
WD40 repeat [Repeat]
15
IPR020472
G-protein beta WD-40 repeat [Repeat]
15
IPR019775
WD40 repeat, conserved site [Conserved_site]
41
IPR001680
WD40 repeat [Repeat]
40
IPR001680
WD40 repeat [Repeat]
43
IPR001680
WD40 repeat [Repeat]
15
IPR020472
G-protein beta WD-40 repeat [Repeat]
15
IPR019775
WD40 repeat, conserved site [Conserved_site]
Gene function information
H-Inv ID
HIT000242067
H-Inv cluster ID
HIX0016115
Accession number
AB080592.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Similar to Bromodomain and WD repeat-containing protein 1; WD repeat-containing protein 9;
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
Q9NSI6
) [Identity/coverage = 99.643%/25.52%] to Homo sapiens (Human). protein.
Experimental evidence
Protein evidence
PubMed ID
9480850
;
10830953
;
12359327
;
14702039
;
15489334
;
18669648
;
19690332
;
20068231
;
21406692
;
21834987
;
22464331
;
ALL
;
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
NA
HGNC aliases
NA
HGNC name
NA
DDBJ
WDR9
UniProt
BRWD1
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000132883
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:54014
;
KEGG GENES
KEGG GENES(54014)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Gene ontology information
Molecular function
protein binding (
GO:0005515
);
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
cytosol; nuclear; cytoskeleton;
Target P
Other
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Protein structure information (GTOP)
Last modified:27-May-2015
Start
End
PDB_ID
E-value
Identity
Coverage
SCOP_ID
3
182
1k8kC
2e-17
11.4
166/354
b.69.4.1
Related H-InvDB links
GTOP
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
NA
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
NA
HG-U133A
NA
HG-U133A_2
NA
HG-U133B
NA
HG-U133_Plus_2
NA
HG-U95
74603_at;
HG-U95A
NA
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
74603_at;
HG-U95Av2
NA
HuEx-1_0
3932204; 3932206; 3932207; 3932208; 3932210; 3932211; 3932212; 3932213; 3932215; 3932216; 3932218; 3932219; 3932220; 3932223; 3932224;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
NA
Whole Human Genome Oligo Microarray:PGID247
NA
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
51 .. 51
A/T
rs140779952
-
CDS
Nonsynonymous[Glu17Val]
70 .. 70
A/G
rs201664856
-
CDS
Synonymous[Pro23Pro]
77 .. 77
C/G
rs146464458
-
CDS
Nonsynonymous[Leu26Val]
136 .. 136
T/C
rs60360876
-
CDS
Synonymous[Val45Val]
194 .. 194
G/T
rs141090950
-
CDS
Nonsynonymous[Gly65Cys]
207 ^ 208
-/CCG
rs72422732
-
CDS
270 .. 270
A/G
rs148461891
-
CDS
Nonsynonymous[Asn90Ser]
325 .. 325
T/C
rs145542359
-
CDS
Synonymous[Phe108Phe]
386 .. 386
T/C
rs149748414
-
CDS
Nonsynonymous[Ser129Pro]
390 ^ 391
-/C
rs68059874
-
CDS
391 .. 391
C/T
rs7282000
-
CDS
Synonymous[Ser130Ser]
400 .. 400
A/G
rs147217615
-
CDS
Synonymous[Glu133Glu]
433 .. 433
T/C
rs112533365
-
CDS
Synonymous[Ala144Ala]
442 .. 442
A/G
rs199912664
-
CDS
Synonymous[Gln147Gln]
528 .. 528
T/C
rs143860314
-
CDS
Nonsynonymous[Met176Thr]
538 .. 538
T/C
rs144677835
-
CDS
Synonymous[Ala179Ala]
568 .. 568
C/-
rs66858924
-
CDS
591 ^ 592
-/T
rs66527137
-
CDS
631 .. 631
A/C
rs61740760
-
CDS
Synonymous[Thr210Thr]
639 .. 639
C/T
rs200275092
-
CDS
Nonsynonymous[Thr213Ile]
760 .. 760
A/G
rs148351328
-
3'UTR
872 .. 872
A/G
rs138437306
-
3'UTR
951 .. 951
A/T
rs143320174
-
3'UTR
992 .. 992
A/G
rs75131766
-
3'UTR
1011 .. 1011
A/G
rs199609037
-
3'UTR
1049 .. 1049
G/A
rs73359523
-
3'UTR
1075 .. 1075
G/C
rs145883608
-
3'UTR
1098 .. 1098
A/G
rs201537681
-
3'UTR
1297 ^ 1298
-/G
rs67270930
-
3'UTR
1360 .. 1360
A/G
rs140818240
-
3'UTR
1379 .. 1379
C/T
rs146415119
-
3'UTR
1390 .. 1390
C/T
rs201918676
-
3'UTR
1430 .. 1430
A/G
rs150325185
-
3'UTR
1467 .. 1467
C/A
rs140156148
-
3'UTR
1476 .. 1476
C/T
rs201010892
-
3'UTR
1491 .. 1491
G/T
rs113355900
-
3'UTR
1516 .. 1516
G/A
rs61745725
-
3'UTR
1540 .. 1540
G/A
rs151167565
-
3'UTR
1646 .. 1646
A/G
rs142189970
-
3'UTR
1677 .. 1677
T/C
rs202165419
-
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
No data available
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene;
Repeat Mask Viewer
;