H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000250605 Accession number: AL389988 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Zinc finger protein ZFPM2; Friend of GATA protein 2; FOG-2; Friend of GATA 2; hFOG-2; Zinc finger protein 89B; Zinc finger protein multitype 2;
 
 

Transcript original information
Accession number AL389988.1
CAGE tag ID NA
EST ID NA
Clone Number IMAGE cDNA clone 2005278
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 1263[bp] (No. of exon:1)[A:426 T:432 G:209 C:196]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA Site: 1235(+) Signal: 1212-1216(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0218090
Genomic location  G-integra Help Chromosome 8
Location 8q23.1
Position 106815527- 106816766
Strand +
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:23414
KEGG GENES KEGG GENES(23414)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000014090
Predicted CDS 1..240;  79[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.728

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000250605
H-Inv cluster ID Locus viewHIX0218090
Accession number AL389988.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Zinc finger protein ZFPM2; Friend of GATA protein 2; FOG-2; Friend of GATA 2; hFOG-2; Zinc finger protein 89B; Zinc finger protein multitype 2;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q8WW38)  [Identity/coverage = 100.0%/6.86%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 1043852814517948154893341610391223226341ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt ZFPM2
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000014090
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:23414
KEGG GENES KEGG GENES(23414)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  cytosol;  nuclear;  Other; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Twilight zone
Related H-InvDB links LIFEdb LIFEdb
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA200114; 
Affymetrix
GeneChip
HG-Focus 219778_at; 
HG-U133 219778_at; 
HG-U133A 219778_at; 
HG-U133A_2 219778_at; 
HG-U133B NA
HG-U133_Plus_2 219778_at; 
HG-U95 49982_at; 
HG-U95A NA
HG-U95B 49982_at; 
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3110895; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P168909; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P168909; 
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
52 .. 52 G/A rs191385674 + CDS Nonsynonymous[Val18Ile]
71 .. 71 C/T rs183300898 + CDS Nonsynonymous[Ser24Leu]
78 .. 78 G/C rs149688628 + CDS Nonsynonymous[Glu26Asp]
82 .. 82 C/G rs199678497 + CDS Nonsynonymous[Gln28Glu]
149 .. 149 G/A rs202084698 + CDS Nonsynonymous[Arg50Gln]
153 .. 153 A/G rs16873744 + CDS Synonymous[Leu51Leu]
294 .. 294 C/G rs16873745 + 3'UTR
330 .. 330 C/G rs6991211 + 3'UTR
437 .. 437 A/T rs188136328 + 3'UTR
453 .. 453 A/G rs190229532 + 3'UTR
469 .. 469 G/T rs78644456 + 3'UTR
577 ^ 578 -/CA rs201063987 + 3'UTR
578 ^ 579 -/ACAA rs113429187 + 3'UTR
579 ^ 580 -/ACAA rs35611262 + 3'UTR
582 ^ 583 -/ACAA rs10690000 + 3'UTR
750 .. 750 T/C rs6469016 + 3'UTR
758 ^ 759 -/TT rs199956937 + 3'UTR
805 .. 805 T/G rs182396880 + 3'UTR
955 .. 955 C/T rs1053039 + 3'UTR
980 ^ 981 -/G rs35654205 + 3'UTR
998 .. 998 T/G rs186732745 + 3'UTR
1128 .. 1128 A/C rs1053040 + 3'UTR
1170 .. 1170 A/G rs75915476 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer