H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
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InterPro name*
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OMIM title*
Pathway ID
Pathway name*
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RefSeq (protein) ID
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H-Invitational ID:
HIT000250605
Accession number:
AL389988
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Similar to Zinc finger protein ZFPM2; Friend of GATA protein 2; FOG-2; Friend of GATA 2; hFOG-2; Zinc finger protein 89B; Zinc finger protein multitype 2;
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AL389988.1
CAGE tag ID
NA
EST ID
NA
Clone Number
IMAGE cDNA clone 2005278
Experimental resources
NBRC
;
HGPD
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
1263[bp] (No. of exon:1)[A:426 T:432 G:209 C:196]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
NA
Develpmental stage
NA
Sequence quality information
CDS feature
N-truncated
Kozak sequence
NA
PolyA
Site: 1235(+) Signal: 1212-1216(+)
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
CACAAATCTCCCTCGTGGATCTCTGAGAACCCATTAGCTGCCAATGAGAA TGTCTCACCAGGAATTCCCTCAGCAGAGGAACAGTTGTCTAGTATAGCAA AAGGTGTGAATGGTTCCAGCCAGGCTCCAACCAGTGGGAAATATTGCCGG CTATGTGATATCCAGTTCAACAACCTTTCAAACTTTATAACTCACAAGAA GTTTTATTGCTCATCACATGCAGCAGAACATGTCAAATGAACTAACTAAA CATCAGTCACCTTTGGTATCAGTGTTTAGTATGTTGTTCTAACCAGTCCA GAAAAAAAAATAAGCTGTTTGAATTACATCTGGGCAATCAGGAGATAATT CATTATGGCTGAGTTGAAGACTTAAGGTGTAATTTCATTACAGTCCATTA GTAAAGTGTATTATTGGTGCCATTTTCAAAAAAATTAATTTATTTTACCA GCAGTATTCATAGCTGTGGTTATTTTTTATTTAAAAACTTTATATTAAAG TCATTTGTAATGTTATTGTATAGTTATTGTGTAGCACATATGGTTTGCAC TGTATAGTAGCTTTTAAAGAAAATAGTCACAATACAGAAAAGCATTTTAG AAATAGCTTCAAAAGCACTTGTGTATCTTGATTTTTTCTTATATGCTGTT GCAGATATATGTATATGCTAAAATATAACTTGCAAAGATGTTCTAAATAC ACATGCTATAAGTTCGCCTTAAGATTTCAATTCTTGGATAATCAGGCTCT GTTTGCACTTTATATTTTAGCAGATACAGTCTCTTAGTCACTAGGCTTTG CATTTGTATGTAGCTGTATGTTTCCGTCCATTTTCTTAATCCTGAACCTG TATGTTAAATGAAGATGGCAATTTTTTTCTTGTATAGTACTTGTATTTTC TTTCGCTGATGCAGCTCTGTCTCAATTTTTAAACCTTTGCTGTTAAATGC AATACTTTATAAAGAATGAACAAAATTACTGGAAGCAGTATTGTAAGTAA TGAGGTAGTATTAATCAGTTTTATCTTTTGAAAGGCACAGTCTAAATCGA AACCCTAAACTCAATGCTGCAAGTATGAATTTAATTCATATATAAGATCT ATTTAAATATAAGAGTAGCAATACTGCACCTGGTGATCACAAAGATAATG TTCTACTTCTGATAGAAATAATTTCTCAACAAATGTTGTTACTATGCATG TATATGGATGGAATAAAATTCCAGATTGTTGGAGAAAAAAAAAAAAAAAA AAAAAAAAAAAAA
Gene structure information
H-Inv cluster ID
HIX0218090
Genomic location
Chromosome
8
Location
8q23.1
Position
106815527- 106816766
Strand
+
Possible duplicated location(s)
NA
Gene structure
1 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:23414
;
KEGG GENES
KEGG GENES(23414)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000014090
Predicted CDS
1..240; 79[aa]; Orientation:+1;
Codon Adaptation Index (CAI).
0.728
HKSPSWISENPLAANENVSPGIPSAEEQLSSIAKGVNGSSQAPTSGKYCR LCDIQFNNLSNFITHKKFYCSSHAAEHVK*
Gene function information
H-Inv ID
HIT000250605
H-Inv cluster ID
HIX0218090
Accession number
AL389988.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Similar to Zinc finger protein ZFPM2; Friend of GATA protein 2; FOG-2; Friend of GATA 2; hFOG-2; Zinc finger protein 89B; Zinc finger protein multitype 2;
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
Q8WW38
) [Identity/coverage = 100.0%/6.86%] to Homo sapiens (Human). protein.
Experimental evidence
Protein evidence
PubMed ID
10438528
;
14517948
;
15489334
;
16103912
;
23226341
;
ALL
;
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
NA
HGNC aliases
NA
HGNC name
NA
DDBJ
NA
UniProt
ZFPM2
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000014090
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:23414
;
KEGG GENES
KEGG GENES(23414)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
extracellular; cytosol; nuclear; Other;
Target P
Other
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Twilight zone
Related H-InvDB links
LIFEdb
;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
AGhsA200114;
Affymetrix
GeneChip
HG-Focus
219778_at;
HG-U133
219778_at;
HG-U133A
219778_at;
HG-U133A_2
219778_at;
HG-U133B
NA
HG-U133_Plus_2
219778_at;
HG-U95
49982_at;
HG-U95A
NA
HG-U95B
49982_at;
HG-U95C
NA
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
3110895;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
A_23_P168909;
Whole Human Genome Oligo Microarray:PGID247
A_23_P168909;
Related H-InvDB links
H-ANGEL;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
52 .. 52
G/A
rs191385674
+
CDS
Nonsynonymous[Val18Ile]
71 .. 71
C/T
rs183300898
+
CDS
Nonsynonymous[Ser24Leu]
78 .. 78
G/C
rs149688628
+
CDS
Nonsynonymous[Glu26Asp]
82 .. 82
C/G
rs199678497
+
CDS
Nonsynonymous[Gln28Glu]
149 .. 149
G/A
rs202084698
+
CDS
Nonsynonymous[Arg50Gln]
153 .. 153
A/G
rs16873744
+
CDS
Synonymous[Leu51Leu]
294 .. 294
C/G
rs16873745
+
3'UTR
330 .. 330
C/G
rs6991211
+
3'UTR
437 .. 437
A/T
rs188136328
+
3'UTR
453 .. 453
A/G
rs190229532
+
3'UTR
469 .. 469
G/T
rs78644456
+
3'UTR
577 ^ 578
-/CA
rs201063987
+
3'UTR
578 ^ 579
-/ACAA
rs113429187
+
3'UTR
579 ^ 580
-/ACAA
rs35611262
+
3'UTR
582 ^ 583
-/ACAA
rs10690000
+
3'UTR
750 .. 750
T/C
rs6469016
+
3'UTR
758 ^ 759
-/TT
rs199956937
+
3'UTR
805 .. 805
T/G
rs182396880
+
3'UTR
955 .. 955
C/T
rs1053039
+
3'UTR
980 ^ 981
-/G
rs35654205
+
3'UTR
998 .. 998
T/G
rs186732745
+
3'UTR
1128 .. 1128
A/C
rs1053040
+
3'UTR
1170 .. 1170
A/G
rs75915476
+
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
No data available
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;