H-InvDB_9.0 released on May 27, 2015.
Search by
Keyword
H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
InterPro ID
InterPro name*
OMIM ID
OMIM title*
Pathway ID
Pathway name*
RefSeq (gene) ID
RefSeq (protein) ID
SCOP ID
UniProt
for
Advanced Search
Home
Quick guide
Navi
BLAST
Site map
Download
Contact us
Help
H-Invitational ID:
HIT000260432
Accession number:
BC062469
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Conserved hypothetical protein.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
BC062469.1
CAGE tag ID
NA
EST ID
NA
Clone Number
IMAGE:6193618
Experimental resources
NBRC
;
HGPD
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
1334[bp] (No. of exon:1)[A:425 T:415 G:252 C:242]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
Peripheral Nervous System, sympathetic trunk
Develpmental stage
NA
Sequence quality information
CDS feature
N-truncated
Kozak sequence
NA
PolyA
Site: 1320(+) Signal: 1295-1299(+)
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
CCCACGCGTCCGCTTAGGCAAGAACTCTTCCTTCAATTAATGAAAATATT AAGTCATTCGACAGTACCTGTGAAGCCCTTCATTCCTTTATACAAAGTGA TTTGCTGAGCCTTTGGGCCGTATAAACATGAATAAAACCCTTTAAGATGT TCATACTCTATTTGGGCAGTCAGATACAAGTAGTTAGAAGTCAGAATCGC TGTGGAAGCACAGTGGAGGAAGTCATGGATTACCACAGATTCCAGAGCGT TGGAATCAGGGAGAGCTTCGAAGAGAAGCCCGGCATTGGCAAAACCTGGG AAGATTCATAAGCTTTTCATAGCCAGAGAAACAGTGGAAAGGGCCATTAG GCCGAGCAACCACCTCAGCAACATAAACAGTTTTTAAAAGCTGAGCAGCA AACTTTGGATTATTTTAAAAGAGTGATCTTCAAACATTTTTCTTCATTTG AACTCAAAAAGAATTCTGAAGCTTTGTACCTCCTTGTGTATTTTTAAGTT GGTATCTAGCACTATTTTGTCAAAAATTGTTTTAATTTTTCTAGTGGATG GAAAATATTGGTATTTGACAATAAAGCTGTCATATCACTCCTTTAAATGT ACCCATTAGAATATAAATATTATAGACATTCGATACCCTTTATTAACTAT TCTTTTAAATACATGAATAGGCTTTTCTTTAACAACAGTACATTTTGCAA CATTCCTTGTTTTCCTTGAGCCTATTCCACTTTCCCTACAGAATTATATT TCAATGTAATGTGTTTTTATACTTTAAAGTCTTTTCTTGCTCTACCTTTC ATAATTCTTTGCAATAAAGATATGTGTATATTGGCTGGGTATAGTGGCTC GGGCCTGTGGTCCAAGCACTTTGGGAGGCCGAGGCGGGCAGACTGCCTGA GCTCAGGAGTTCGAGACCGGCCTGGGCAGCATGGCGGAGCCCTGTCTCTA CTAAAAATACAAAAAAAAAAAAAAAATTAGCTGGGCATGGTGCCCCATGC CTGTGGTCCCACCTACACGGGAGGTTGAAGCACGAGAACCTTGGAGGCAG AGGTTGCAGTGAGCCGAGATCGTGCCAGTTGACTCCAGCCTGGGTGACAA AGTGAGACTCTGTCTCAAAAAAAAAAGTATATGTGTATATTTTTAAATTT CTTGATGGCAACATTTTAAATGTCTAAAATATTCTCCATGACTAATTTAT TATTATAACTGTTGTCACTTATTACTTATATAACTATATAGATATTATTC AGTAAGATAAATATTCTGTAAATCTTTATGCTTGTATAACAAAAATTAAA ATATTACTGGAAATACATTAAAAAAAAAAAAAAA
Gene structure information
H-Inv cluster ID
HIX0037746
Genomic location
Chromosome
14
Location
14q12
Position
30083719- 30085037
Strand
-
Possible duplicated location(s)
NA
Gene structure
1 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
NA
KEGG GENES
NA
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000448428
Predicted CDS
845..1105; 86[aa]; Orientation:+2;
Codon Adaptation Index (CAI).
0.717
WLGPVVQALWEAEAGRLPELRSSRPAWAAWRSPVSTKNTKKKKKLAGHGA PCLWSHLHGRLKHENLGGRGCSEPRSCQLTPAWVTK*
Gene function information
H-Inv ID
HIT000260432
H-Inv cluster ID
HIX0037746
Accession number
BC062469.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Conserved hypothetical protein.
Similarity category
Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence
NA
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
NA
HGNC aliases
NA
HGNC name
NA
DDBJ
NA
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000448428
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
NA
KEGG GENES
NA
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
extracellular; cytosol; nuclear;
Target P
Not predicted
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
NA
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
NA
HG-U133A
NA
HG-U133A_2
NA
HG-U133B
NA
HG-U133_Plus_2
NA
HG-U95
NA
HG-U95A
NA
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
3559222;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
NA
Whole Human Genome Oligo Microarray:PGID247
NA
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
116 .. 116
G/T
rs149865198
-
5'UTR
119 .. 119
C/T
rs80319386
-
5'UTR
202 .. 202
G/A
rs182825571
-
5'UTR
205 .. 205
G/A
rs147323211
-
5'UTR
239 .. 239
A/T
rs111809329
-
5'UTR
265 .. 265
G/A
rs76064158
-
5'UTR
281 .. 281
C/T
rs74351189
-
5'UTR
381 .. 381
T/G
rs10140936
-
5'UTR
391 .. 391
C/A
rs191984324
-
5'UTR
509 .. 509
G/A
rs2146128
+
5'UTR
521 .. 521
C/G
rs145604950
-
5'UTR
609 .. 609
G/T
rs2146129
+
5'UTR
637 .. 637
C/T
rs186847944
-
5'UTR
659 .. 659
A/G
rs140059488
-
5'UTR
839 .. 839
G/C
rs113182543
-
5'UTR
907 .. 907
G/T
rs12897466
-
CDS
Nonsynonymous[Arg21Ser]
959 .. 959
A/C
rs10129531
-
CDS
Nonsynonymous[Thr39Pro]
969 .. 969
A/T
rs12878607
-
CDS
Nonsynonymous[Lys42Ile]
971 .. 971
A/C
rs12878602
-
CDS
Nonsynonymous[Lys43Gln]
1127 .. 1127
G/A
rs12894576
-
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
Charlie2b
422
832
-
AluSz6
833
1126
+
Charlie2b
1127
1318
-
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene;
Repeat Mask Viewer
;