H-InvDB - Topic Annotation

NEDO FL-cDNA PJ: annotation of NEDO full-length cDNA project [Download]

Description: We provide the detailed annotation data for the H-InvDB_6.0 representative transcripts and NEDO human full-length cDNA sequences (rep. + NEDO-PJ).

summary of anntaion
evolutionary conservation and coding-potential
expression frequency based on EST and CAGE tags

1. summary of anntaion

[Download (1)] Annotation summary
File name: hinvdb_nedo_summary.txt.gz [Download]
Format:
1: HIT
2: HIX
3: ACC#
4: Chr. number
5: Evolutionary conservation
6: Expression frequency (EST)
7: Transcript length (b.p.)
8: CDS length (a.a.)
9: Similarity category
10: Definition

No.	HIX	HIT	ACC#	Chr. Number	Evolutionary conservation	Expression frequency	Transcript length (b.p.)	CDS length (a.a.)	Similarity category	Definition
1	HIX0001452	HIT000000166	AB007918	1	1	High	9895	1625	I	Protein OSCP1 (Organic solute transport protein 1) (hOSCP1) (Oxidored- nitro domain-containing protein 1).
2	HIX0000960	HIT000000171	AB007923	1	2	High	8018	2241	I	Fibroblast growth factor 10 precursor (FGF-10) (Keratinocyte growth factor 2).
3	HIX0022179	HIT000000174	AB007926	1	1	High	6833	833	I	Sialyltransferase 6 isoform j.
4	HIX0001545	HIT000000180	AB007932	1	1	High	6263	1910	I	Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22) (PPT-1) (Palmitoyl-protein hydrolase 1).
5	HIX0001257	HIT000000181	AB007933	1	1	High	2879	507	I	Peflin (PEF protein with a long N-terminal hydrophobic domain) (Penta- EF hand domain-containing protein 1).
6	HIX0000672	HIT000000190	AB007942	1	1	High	5747	914	I	Eukaryotic translation initiation factor 1A, X-chromosomal (eIF-1A X isoform) (eIF-4C).
7	HIX0001372	HIT000000192	AB007944	1	1	High	5983	410	I	Polyhomeotic-like protein 2 (hPH2) (Early development regulatory protein 2).
8	HIX0000646	HIT000000201	AB007954	1	3	NA	6565	90	I	Mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isoenzyme B isoform 1.
9	HIX0114185	HIT000000208	AB007961	1	3	Medium	5929	69	I	Antigen peptide transporter 2 (APT2) (ATP-binding cassette sub-family B member 3) (Peptide transporter TAP2) (Peptide transporter PSF2) (Peptide supply factor 2) (PSF-2) (Peptide transporter involved in antigen processing 2).
10	HIX0000998	HIT000000209	AB007962	1	3	High	5732	282	I	Histone H3.1 (H3/a) (H3/b) (H3/c) (H3/d) (H3/f) (H3/h) (H3/i) (H3/j) (H3/k) (H3/l).
11	HIX0000555	HIT000000210	AB007963	1	3	High	5766	496	I	RING finger protein 44.
12	HIX0001365	HIT000000217	AB007970	1	3	NA	4756	152	I	40S ribosomal protein S18 (Ke-3) (Ke3).
13	HIX0001159	HIT000000218	AB007971	1	3	Low	5584	145	I	Olfactory receptor, family 2, subfamily J, member 3.
14	HIX0018156	HIT000000221	AB007974	1	3	Low	5809	228	I	Ubiquitin-conjugating enzyme E2 D2 (EC 6.3.2.19) (Ubiquitin-protein ligase D2) (Ubiquitin carrier protein D2) (Ubiquitin-conjugating enzyme E2-17 kDa 2) (E2(17)KB 2).
15	HIX0001244	HIT000000222	AB007975	1	3	Medium	5951	141	I	Tubulin beta chain (Tubulin beta-5 chain).
16	HIX0001353	HIT000000226	AB007979	1	3	High	5596	96	I	Major histocompatibility complex, class II, DM alpha precursor.
17	HIX0000617	HIT000000432	AB014607	1	1	High	6359	608	I	Chloride channel protein ClC-Ka (Chloride channel Ka) (ClC-K1).
18	HIX0001253	HIT000058452	AB015856	1	1	High	2509	671	I	Tubulointerstitial nephritis antigen-like precursor (Tubulointerstitial nephritis antigen-related protein) (TIN Ag-related protein) (TIN-Ag-RP) (Glucocorticoid-inducible protein 5) (Oxidized LDL-responsive gene 2 protein) (OLRG-2).
19	HIX0000182	HIT000058537	AB017919	1	3	High	2263	664	I	Actin-binding LIM protein 3 (Actin-binding LIM protein family member 3) (abLIM-3).
20	HIX0001006	HIT000000461	AB018279	1	1	High	4353	743	I	Mannosyl-oligosaccharide 1,2-alpha-mannosidase IC (EC 3.2.1.113) (Processing alpha-1,2-mannosidase IC) (Alpha-1,2-mannosidase IC) (Mannosidase alpha class 1C member 1) (HMIC).
21	HIX0000412	HIT000058567	AB018739	1	1	High	2413	730	I	DNA fragmentation factor subunit alpha (DNA fragmentation factor 45 kDa subunit) (DFF-45) (Inhibitor of CAD) (ICAD).
22	HIX0000915	HIT000000602	AB020692	1	3	High	4076	799	I	Dysbindin (Dystrobrevin-binding protein 1) (Hermansky-Pudlak syndrome 7 protein homolog) (Hps7-like protein).
23	HIX0000836	HIT000000610	AB020700	1	3	High	4195	920	I	RAS-responsive element-binding protein 1 (RREB-1) (Raf-responsive zinc finger protein LZ321) (Zinc finger motif-enhancer binding-protein 1) (Zep-1) (Finger protein in nuclear bodies).
24	HIX0000108	HIT000000628	AB020718	1	1	High	5219	982	I	Integrator complex subunit 11 (EC 3.1.27.-) (Int11) (Cleavage and polyadenylation-specific factor 3-like protein) (CPSF3-like protein) (Protein related to CPSF subunits of 68 kDa) (RC-68).
25	HIX0000180	HIT000000711	AB023211	1	1	High	4343	666	I	Protein RER1.
26	HIX0000124	HIT000001052	AB037758	1	1	High	5181	1393	I	Von Willebrand factor A domain-related protein isoform 1.
27	HIX0001701	HIT000001098	AB037804	1	1	High	4904	906	I	Neurotrophic factor artemin isoform 1, precursor.
28	HIX0000932	HIT000001151	AB037857	1	1	High	6160	880	I	Thioredoxin family Trp26.
29	HIX0001055	HIT000001156	AB037862	1	1	High	5378	1238	I	Exostoses (multiple)-like 1.
30	HIX0028498	HIT000059328	AB042410	1	1	Medium	3517	385	I	Dolichyl-diphosphooligosaccharide-protein glycosyltransferase precursor.
31	HIX0001643	HIT000059351	AB043587	1	1	High	3598	529	I	Claudin-19. Isoform 2.
32	HIX0000682	HIT000059404	AB044343	1	3	High	1272	356	I	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase (EC 2.4.1.101) (N-glycosyl-oligosaccharide-glycoprotein N- acetylglucosaminyltransferase I) (GNT-I) (GlcNAc-T I).
33	HIX0023719	HIT000059426	AB044805	1	1	High	3103	472	I	L-myc-1 proto-oncogene protein. Isoform 2.
34	HIX0023517	HIT000059435	AB045116	1	3	High	1286	373	I	Endothelin-1 precursor (Preproendothelin-1) (PPET1) [Contains: Endothelin-1 (ET-1); Big endothelin-1].
35	HIX0001392	HIT000001329	AB046834	1	1	High	4143	1191	I	Gap junction beta-3 protein (Connexin-31) (Cx31).
36	HIX0021590	HIT000241990	AB057595	1	1	High	1622	429	I	Alcohol dehydrogenase [NADP+] (EC 1.1.1.2) (Aldehyde reductase) (Aldo- keto reductase family 1 member A1).
37	HIX0000530	HIT000059785	AB057597	1	1	High	3071	572	I	Lung type-I cell membrane-associated glycoprotein isoform c.
38	HIX0000110	HIT000059826	AB060688	1	3	High	1181	191	I	Protocadherin gamma-A1 precursor (PCDH-gamma-A1).
39	HIX0028880	HIT000383156	AB065439	1	3	NA	1339	313	I	Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2.
40	HIX0028944	HIT000383158	AB065441	1	3	NA	1330	339	I	UNC5C-like protein (Protein unc-5 homolog C-like) (ZU5 and death domain-containing protein).
41	HIX0029602	HIT000383162	AB065447	1	3	NA	1337	243	I	Myelin-oligodendrocyte glycoprotein precursor.
42	HIX0028956	HIT000383265	AB065597	1	1	NA	1339	313	I	Cytochrome b-c1 complex subunit 6, mitochondrial precursor (Ubiquinol- cytochrome c reductase complex 11 kDa protein) (Cytochrome c1 non-heme 11 kDa protein) (Mitochondrial hinge protein) (Complex III subunit VIII) (Complex III subunit 6).
43	HIX0028930	HIT000383276	AB065611	1	3	NA	1354	318	I	Trem-like transcript 2 protein precursor (TLT-2) (Triggering receptor expressed on myeloid cells-like protein 2).
44	HIX0028899	HIT000383279	AB065614	1	3	NA	1351	317	I	Triggering receptor expressed on myeloid cells 2 precursor (TREM-2) (Triggering receptor expressed on monocytes 2).
45	HIX0028898	HIT000383280	AB065616	1	3	NA	1339	313	I	Trem-like transcript 1 protein precursor (TLT-1) (Triggering receptor expressed on myeloid cells-like protein 1).
46	HIX0028925	HIT000383289	AB065630	1	1	NA	1354	318	I	Protein 4.1 (Band 4.1) (P4.1) (EPB4.1) (4.1R). Isoform 3.
47	HIX0029603	HIT000383291	AB065632	1	1	NA	1400	308	I	Delta-type opioid receptor (DOR-1).
48	HIX0028878	HIT000383299	AB065642	1	1	NA	2084	313	I	Glucocorticoid modulatory element-binding protein 1 (GMEB-1) (Parvovirus initiation factor p96) (PIF p96) (DNA-binding protein p96PIF). Isoform 2.
49	HIX0028896	HIT000383302	AB065645	1	1	NA	1357	332	I	Cytochrome P450 4B1 (EC 1.14.14.1) (CYPIVB1) (P450-HP).
50	HIX0028936	HIT000383303	AB065646	1	1	NA	1369	323	I	Phosphatidylinositol 3-kinase regulatory subunit gamma (PI3-kinase p85 subunit gamma) (PtdIns-3-kinase p85-gamma) (p55PIK).

No.

HIX

HIT

ACC#

Chr. Number

Evolutionary conservation

Expression frequency

Transcript length (b.p.)

CDS length (a.a.)

Similarity category

Definition

HIX0001452

AB007918

High

9895

1625

Protein OSCP1 (Organic solute transport protein 1) (hOSCP1) (Oxidored- nitro domain-containing protein 1).

HIX0000960

AB007923

High

8018

2241

Fibroblast growth factor 10 precursor (FGF-10) (Keratinocyte growth factor 2).

HIX0022179

AB007926

High

6833

833

Sialyltransferase 6 isoform j.

HIX0001545

AB007932

High

6263

1910

Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22) (PPT-1) (Palmitoyl-protein hydrolase 1).

HIX0001257

AB007933

High

2879

507

Peflin (PEF protein with a long N-terminal hydrophobic domain) (Penta- EF hand domain-containing protein 1).

HIX0000672

AB007942

High

5747

914

Eukaryotic translation initiation factor 1A, X-chromosomal (eIF-1A X isoform) (eIF-4C).

HIX0001372

AB007944

High

5983

410

Polyhomeotic-like protein 2 (hPH2) (Early development regulatory protein 2).

HIX0000646

AB007954

6565

Mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isoenzyme B isoform 1.

HIX0114185

AB007961

Medium

5929

Antigen peptide transporter 2 (APT2) (ATP-binding cassette sub-family B member 3) (Peptide transporter TAP2) (Peptide transporter PSF2) (Peptide supply factor 2) (PSF-2) (Peptide transporter involved in antigen processing 2).

HIX0000998

AB007962

High

5732

282

Histone H3.1 (H3/a) (H3/b) (H3/c) (H3/d) (H3/f) (H3/h) (H3/i) (H3/j) (H3/k) (H3/l).

HIX0000555

AB007963

High

5766

496

RING finger protein 44.

HIX0001365

AB007970

4756

152

40S ribosomal protein S18 (Ke-3) (Ke3).

HIX0001159

AB007971

Low

5584

145

Olfactory receptor, family 2, subfamily J, member 3.

HIX0018156

AB007974

Low

5809

228

Ubiquitin-conjugating enzyme E2 D2 (EC 6.3.2.19) (Ubiquitin-protein ligase D2) (Ubiquitin carrier protein D2) (Ubiquitin-conjugating enzyme E2-17 kDa 2) (E2(17)KB 2).

HIX0001244

AB007975

Medium

5951

141

Tubulin beta chain (Tubulin beta-5 chain).

HIX0001353

AB007979

High

5596

Major histocompatibility complex, class II, DM alpha precursor.

HIX0000617

AB014607

High

6359

608

Chloride channel protein ClC-Ka (Chloride channel Ka) (ClC-K1).

HIX0001253

AB015856

High

2509

671

Tubulointerstitial nephritis antigen-like precursor (Tubulointerstitial nephritis antigen-related protein) (TIN Ag-related protein) (TIN-Ag-RP) (Glucocorticoid-inducible protein 5) (Oxidized LDL-responsive gene 2 protein) (OLRG-2).

HIX0000182

AB017919

High

2263

664

Actin-binding LIM protein 3 (Actin-binding LIM protein family member 3) (abLIM-3).

HIX0001006

AB018279

High

4353

743

Mannosyl-oligosaccharide 1,2-alpha-mannosidase IC (EC 3.2.1.113) (Processing alpha-1,2-mannosidase IC) (Alpha-1,2-mannosidase IC) (Mannosidase alpha class 1C member 1) (HMIC).

HIX0000412

AB018739

High

2413

730

DNA fragmentation factor subunit alpha (DNA fragmentation factor 45 kDa subunit) (DFF-45) (Inhibitor of CAD) (ICAD).

HIX0000915

AB020692

High

4076

799

Dysbindin (Dystrobrevin-binding protein 1) (Hermansky-Pudlak syndrome 7 protein homolog) (Hps7-like protein).

HIX0000836

AB020700

High

4195

920

RAS-responsive element-binding protein 1 (RREB-1) (Raf-responsive zinc finger protein LZ321) (Zinc finger motif-enhancer binding-protein 1) (Zep-1) (Finger protein in nuclear bodies).

HIX0000108

AB020718

High

5219

982

Integrator complex subunit 11 (EC 3.1.27.-) (Int11) (Cleavage and polyadenylation-specific factor 3-like protein) (CPSF3-like protein) (Protein related to CPSF subunits of 68 kDa) (RC-68).

HIX0000180

AB023211

High

4343

666

Protein RER1.

HIX0000124

AB037758

High

5181

1393

Von Willebrand factor A domain-related protein isoform 1.

HIX0001701

AB037804

High

4904

906

Neurotrophic factor artemin isoform 1, precursor.

HIX0000932

AB037857

High

6160

880

Thioredoxin family Trp26.

HIX0001055

AB037862

High

5378

1238

Exostoses (multiple)-like 1.

HIX0028498

AB042410

Medium

3517

385

Dolichyl-diphosphooligosaccharide-protein glycosyltransferase precursor.

HIX0001643

AB043587

High

3598

529

Claudin-19. Isoform 2.

HIX0000682

AB044343

High

1272

356

Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase (EC 2.4.1.101) (N-glycosyl-oligosaccharide-glycoprotein N- acetylglucosaminyltransferase I) (GNT-I) (GlcNAc-T I).

HIX0023719

AB044805

High

3103

472

L-myc-1 proto-oncogene protein. Isoform 2.

HIX0023517

AB045116

High

1286

373

Endothelin-1 precursor (Preproendothelin-1) (PPET1) [Contains: Endothelin-1 (ET-1); Big endothelin-1].

HIX0001392

AB046834

High

4143

1191

Gap junction beta-3 protein (Connexin-31) (Cx31).

HIX0021590

AB057595

High

1622

429

Alcohol dehydrogenase [NADP+] (EC 1.1.1.2) (Aldehyde reductase) (Aldo- keto reductase family 1 member A1).

HIX0000530

AB057597

High

3071

572

Lung type-I cell membrane-associated glycoprotein isoform c.

HIX0000110

AB060688

High

1181

191

Protocadherin gamma-A1 precursor (PCDH-gamma-A1).

HIX0028880

AB065439

1339

313

Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2.

HIX0028944

AB065441

1330

339

UNC5C-like protein (Protein unc-5 homolog C-like) (ZU5 and death domain-containing protein).

HIX0029602

AB065447

1337

243

Myelin-oligodendrocyte glycoprotein precursor.

HIX0028956

AB065597

1339

313

Cytochrome b-c1 complex subunit 6, mitochondrial precursor (Ubiquinol- cytochrome c reductase complex 11 kDa protein) (Cytochrome c1 non-heme 11 kDa protein) (Mitochondrial hinge protein) (Complex III subunit VIII) (Complex III subunit 6).

HIX0028930

AB065611

1354

318

Trem-like transcript 2 protein precursor (TLT-2) (Triggering receptor expressed on myeloid cells-like protein 2).

HIX0028899

AB065614

1351

317

Triggering receptor expressed on myeloid cells 2 precursor (TREM-2) (Triggering receptor expressed on monocytes 2).

HIX0028898

AB065616

1339

313

Trem-like transcript 1 protein precursor (TLT-1) (Triggering receptor expressed on myeloid cells-like protein 1).

HIX0028925

AB065630

1354

318

Protein 4.1 (Band 4.1) (P4.1) (EPB4.1) (4.1R). Isoform 3.

HIX0029603

AB065632

1400

308

Delta-type opioid receptor (DOR-1).

HIX0028878

AB065642

2084

313

Glucocorticoid modulatory element-binding protein 1 (GMEB-1) (Parvovirus initiation factor p96) (PIF p96) (DNA-binding protein p96PIF). Isoform 2.

HIX0028896

AB065645

1357

332

Cytochrome P450 4B1 (EC 1.14.14.1) (CYPIVB1) (P450-HP).

HIX0028936

AB065646

1369

323

Phosphatidylinositol 3-kinase regulatory subunit gamma (PI3-kinase p85 subunit gamma) (PtdIns-3-kinase p85-gamma) (p55PIK).

2. evolutionary conservation and coding-potential

3. expression frequency based on EST and CAGE tags

[download (3)]
file name: hinvdb_nedo_cage_freq.txt.gz [Download]

Format:
01: HIT
02: HIX
03: ACC#
04: Sequence data provider
05: Sequence length (nucleotide)
06: Sequence length (translation)
06: Number of overlapping CAGE tags at HIT start (±10bp)
07: Number of overlapping CAGE tags at HIT start (±50bp)
08: Number of overlapping CAGE tags at HIT start (±100bp)
09: Number of overlapping CAGE tags at HIT start (±500bp)
10: Number of overlapping CAGE tags at HIT start (±1000bp)
11: Number of overlapping CAGE tags at HIT start-end
12: Classification of CAGE expression frequency (high, medium, low, NA)
13: Chr. number
14: Category
15: Definition

[download (4)]
file name: hinvdb_nedo_est_freq.txt.gz [Download]
Format:
01: HIT
02: HIX
03: ACC#
04: 5'-EST support (No. of overlapped ESTs)
05: 3'-EST support (No. of overlapped ESTs)
06: CDS EST support (No. of overlapped ESTs)
07: HIT EST support (No. of overlapped ESTs)
08: Classification of EST expression frequency (high, medium, low)
09: Chr. number
10: Category
11: Definition


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H-InvDB topic annotation

1. summary of anntaion

2. evolutionary conservation and coding-potential

3. expression frequency based on EST and CAGE tags